mRNA_Ecto-sp13_S_contig7723.18961.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: A0A6H5L1H9_9PHAE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H9_9PHAE) HSP 1 Score: 574 bits (1480), Expect = 1.520e-200 Identity = 335/367 (91.28%), Postives = 344/367 (93.73%), Query Frame = 1
Query: 55 MEGLPLDVILLASIGIVAVTSLVVYLRRKLASNDQDEGXXXXXXXAGVDGANNDTTPGRLARHPGGECPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVRIRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAARXXXXXXXXXXXXXXXXXXXXXXXXXXP--PTGVASGEGRFDNSPQGAGMAAVLALMVGTLLALAGGGEGQTAVAAGAMGAAVAAVAERYGSRASRAMPPLAGDW 1149
MEGLPLDVILL SIGIVAVTSLVVY+ RKL SND+DE G+DG+NNDTTPGRLARHPGGECPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVRIRCPMCRQEVTML+GAAGDAQAAGDTDQAHDARA +APAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAARXXXXXXXXXXXXXXXXXXXXXXXXXX P VASGEGRFDNSPQGAG+AAVLAL+VG LLALAGGGEGQTA+ AGAMGAAVAA AERYGSRA R MPPLAGDW
Sbjct: 1 MEGLPLDVILLVSIGIVAVTSLVVYISRKLTSNDEDE----EGAATGIDGSNNDTTPGRLARHPGGECPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVRIRCPMCRQEVTMLHGAAGDAQAAGDTDQAHDARAESAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAVASGEGRFDNSPQGAGIAAVLALLVGALLALAGGGEGQTALGAGAMGAAVAAAAERYGSRAPRVMPPLAGDW 363
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: D7FX72_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX72_ECTSI) HSP 1 Score: 402 bits (1033), Expect = 1.620e-134 Identity = 248/258 (96.12%), Postives = 251/258 (97.29%), Query Frame = 1
Query: 379 MCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAARXXXXXXXXXXXXXXXXXXXXXXXXXX-PPTGVASGEGRFDNSPQGAGMAAVLALMVGTLLALAGGGEGQTAVAAGAMGAAVAAVAERYGSRASRAMPPLAGDW 1149
MCRQEVTMLYGAAGDAQAAGDTD+AHDARAG+APA TTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAARXXXXXXXXXXXXXXXXXXXXXXXXXX PP VASGEGRFDNSPQGAGMAAVLALMVG LLALAGGGEGQTA+AAGAMGAAVAA AERYGSRA RAMPPLAGDW
Sbjct: 1 MCRQEVTMLYGAAGDAQAAGDTDEAHDARAGSAPATTTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLSWERSRAARXXXXXXXXXXXXXXXXXXXXXXXXXXXPPAAVASGEGRFDNSPQGAGMAAVLALMVGALLALAGGGEGQTAMAAGAMGAAVAAAAERYGSRAPRAMPPLAGDW 258
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: A0A2Z7CY40_9LAMI (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CY40_9LAMI) HSP 1 Score: 129 bits (324), Expect = 5.260e-31 Identity = 73/189 (38.62%), Postives = 107/189 (56.61%), Query Frame = 1
Query: 256 CPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVR-IRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 819
C IC S P Q NC HWFC CIL ++ G + +CP+CR+E+T+L + ++ Q+H + EI I R+N + R Q ++D P LLRRL D+ R R ++R V L + V+A+Y+LSP+D+IPE L+G+ GLLDDL++V+ +LH+ S+YR VLLS
Sbjct: 10 CSICHS-NFNIPCQANCSHWFCGGCILQVWEHGAALHPCKCPLCRREITLLVPSEASSR------QSH----------MVNTAEILRSIERYNRQYGERSNGVMQRVQDLPFLLRRLLRDI-RDPQRTLPVVIRARVYLAMVVSAIYVLSPVDIIPEGLLGVIGLLDDLIIVLICVLHVASLYRAVLLS 180
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: UPI0020095D38 (E3 ubiquitin-protein ligase RNF170-like n=3 Tax=Salvia TaxID=21880 RepID=UPI0020095D38) HSP 1 Score: 127 bits (320), Expect = 1.680e-30 Identity = 76/190 (40.00%), Postives = 107/190 (56.32%), Query Frame = 1
Query: 253 ECPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVR-IRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 819
EC IC + P Q NCGHWFC RCIL +D G +R +CP+CR+E+T+L +AH GA EI + I +N + S Q + D P LLRRL D+ R ++R V L + ++A+Y+LSP+D+IPE+L+GI GLLDDL+VV L++ ++YRTVL+S
Sbjct: 9 ECSICQQ-NFQIPCQANCGHWFCGRCILQVWDFGHALRPCKCPLCRREITLLV-----------PSEAHRTADGA---------EILQRIEHYNRQFGAHPNSLMQRMYDLPFLLRRLTRDIM-DPQRALPLVVRARVYLAMILSAMYVLSPVDIIPEALLGIIGLLDDLIVVFMCFLYVAALYRTVLVS 176
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: A0A023GH49_AMBTT (E3 ubiquitin-protein ligase RNF170 n=3 Tax=Amblyomma TaxID=6942 RepID=A0A023GH49_AMBTT) HSP 1 Score: 121 bits (303), Expect = 3.580e-27 Identity = 77/203 (37.93%), Postives = 115/203 (56.65%), Query Frame = 1
Query: 238 RHP----GGECPICLSIEVETPVQTNCGHWFCARCILSYYDQGG-RVRIRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPW-QVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS-WE 825
RHP +CPICL+ E PV+TNCGH FCA C++SY+ G R +RCP+CRQ+V+++ D +A DTD + R + +I+ +N R SG R PW + D P LLR S+ ++ + R + L A +Y++SP+D+IPE++ GI GLLDDL VV+ L +++T +YR L + W+
Sbjct: 79 RHPHYGSDAQCPICLA-EPRYPVETNCGHLFCANCLVSYWHHGNWRGAVRCPVCRQQVSVMLRCFQDQHSAEDTDAQREERT-----------RLLRDINDYNRRYSGEPR-PWLDHLRDLPTLLRHAGSEFFSVGGIMY--MFRLRIVLCFVAAIMYLVSPLDMIPEAIFGILGLLDDLFVVLLLAIYVTVIYRRFLAARWQ 266
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: A0A7J7KM54_BUGNE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7KM54_BUGNE) HSP 1 Score: 120 bits (300), Expect = 7.240e-27 Identity = 68/187 (36.36%), Postives = 106/187 (56.68%), Query Frame = 1
Query: 253 ECPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVR-IRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTV 810
+CP+CL V+ ++TNCGH FC CI++Y+ G + I CP CRQ VT+L + + D++ + + +E+ +N R SG R+ W+ I+D P + R DL + VF + R + + L +A LY+LSP+D+IPE VGI GLLDDLV++ L L+++ +YR+V
Sbjct: 78 QCPVCLD-SVQYGLETNCGHLFCGSCIITYWQTGRWLGPIACPNCRQTVTILLNSFTAEELQEDSEAKN---------------RVLQEVRNYNRRFSGEPRTIWEYIQDLPTIFRHAIGDLFSEEGMVF--VFRARIYICLTIAVLYLLSPLDIIPEMAVGILGLLDDLVILFLLALYISMIYRSV 246
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: UPI001FB083FF (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB083FF) HSP 1 Score: 117 bits (292), Expect = 1.310e-26 Identity = 66/187 (35.29%), Postives = 100/187 (53.48%), Query Frame = 1
Query: 256 CPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVR-IRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVL 813
C IC + TP Q NC HWFC RCIL +D G + +CP+CR+E+T+L + + ++ A E+ I R+N + S Q ++D P LLRRL DL R ++R V L + V+ +YI+SP+D+IPE ++GI GLLDD ++ + LH+ ++YR+ L
Sbjct: 10 CSICHN-NFTTPCQANCSHWFCGRCILQVWDHGSSFQPCKCPLCRREITLLIPSRASSNECNSSEVA----------------EVFGRIERYNRHFGQQTNSLVQRMQDLPFLLRRLTRDLMNPQ-RSLPFVLRMRVYLAMLVSVIYIISPVDIIPEGILGIIGLLDDAIIALICFLHVAALYRSAL 178
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: UPI000C1D1BA9 (E3 ubiquitin-protein ligase RNF170-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D1BA9) HSP 1 Score: 116 bits (291), Expect = 1.800e-26 Identity = 68/187 (36.36%), Postives = 102/187 (54.55%), Query Frame = 1
Query: 256 CPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVR-IRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVL 813
C IC + P Q NC HWFC CIL ++ G + +CP+CR+E+T+L + ++ Q HD G E+ + R+N R Q ++D P LLRRL DL R +MR V L + ++A Y+LSP+D++PE+L+GI GLLDD ++V+ LH+ ++YR+VL
Sbjct: 10 CSICQA-NFHIPCQANCSHWFCGNCILQVWNYGSALHPCKCPLCRREITLLVPSEVSSR------QRHD----------PGVAEVLQRTERYNHIFGERSNGLMQRMQDLPFLLRRLLQDLINPQ-RSLPLVMRARVFLAIILSATYVLSPVDIVPEALLGIIGLLDDFIIVLICFLHVAALYRSVL 178
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: A0A6M2CSY6_RHIMP (E3 ubiquitin-protein ligase RNF170 (Fragment) n=2 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CSY6_RHIMP) HSP 1 Score: 117 bits (294), Expect = 2.340e-26 Identity = 76/205 (37.07%), Postives = 115/205 (56.10%), Query Frame = 1
Query: 226 GRLARHPGGE--CPICLSIEVETPVQTNCGHWFCARCILSYYDQGG-RVRIRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPW-QVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS-WE 825
G +A H G + CPICL E V+TNCGH FCA C++SY+ G R +RCP+CRQ+V+++ D +TD + RA + +I+ +N R SG R PW + D P LLR + S+ ++ + R + L A +Y++SP+D+IPE++ GI GLLDDL VV+ L +++T +YR L + W+
Sbjct: 38 GSMAAHYGSDAQCPICLG-EPRHSVETNCGHLFCASCLVSYWHHGNWRGAVRCPVCRQQVSVMLRCFQDQHLPDETDAQREERA-----------RLLRDINDYNRRYSGEPR-PWLDHLRDLPTLLRHVGSEFFSMGGIMY--MFRLRIVLCFVAAIMYLISPLDMIPEAIFGILGLLDDLFVVLLLAIYVTVIYRRFLATRWQ 227
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Match: UPI00103644AE (E3 ubiquitin-protein ligase RNF170-like n=2 Tax=Camellia sinensis TaxID=4442 RepID=UPI00103644AE) HSP 1 Score: 116 bits (290), Expect = 2.460e-26 Identity = 66/188 (35.11%), Postives = 105/188 (55.85%), Query Frame = 1
Query: 256 CPICLSIEVETPVQTNCGHWFCARCILSYYDQGGRVR-IRCPMCRQEVTMLYGAAGDAQAAGDTDQAHDARAGAAPAATTGSPEIQEEISRFNDRNSGRWRSPWQVIEDAPLLLRRLWSDLSRGDTRVFGELMRRGVQLQLFVAALYILSPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLL 816
C IC P Q NC HWFC CIL ++ G ++ +CP+CR+++T+L + ++ ++D A EI +I R+N R Q + D P LLRRL+ D+ + R ++R V L +FV+A+YI+SP+D+IPE ++GI GL DD+++ + LH+ ++YR+VLL
Sbjct: 10 CSICHG-SFNLPCQANCSHWFCGNCILQVWNYGSALQPCKCPLCRRQITLLIPSDASSRQRHNSDAA----------------EILGKIERYNRYFGERSNGLIQRLRDLPFLLRRLFRDIMQPQ-RSLPLVIRARVYLAMFVSAIYIISPVDIIPEGILGIIGLFDDVLIALICFLHVAALYRSVLL 179 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7723.18961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7723.18961.1 >prot_Ecto-sp13_S_contig7723.18961.1 ID=prot_Ecto-sp13_S_contig7723.18961.1|Name=mRNA_Ecto-sp13_S_contig7723.18961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=366bp MEGLPLDVILLASIGIVAVTSLVVYLRRKLASNDQDEGGVAAAAAAGVDGback to top mRNA from alignment at Ecto-sp13_S_contig7723:2399..6101- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7723.18961.1 ID=mRNA_Ecto-sp13_S_contig7723.18961.1|Name=mRNA_Ecto-sp13_S_contig7723.18961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3703bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7723:2399..6101- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7723:2399..6101- >mRNA_Ecto-sp13_S_contig7723.18961.1 ID=mRNA_Ecto-sp13_S_contig7723.18961.1|Name=mRNA_Ecto-sp13_S_contig7723.18961.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7723:2399..6101- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |