mRNA_Ecto-sp13_S_contig7671.18901.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7671.18901.1
Unique NamemRNA_Ecto-sp13_S_contig7671.18901.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: D8LLJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLJ6_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 9.810e-100
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDMEWRKRNGIEQPVHNRRRTPPKKKW 753
            MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRP+TKMDRIASTHERSNPWDMEWR RNGIEQPVHNRRRTPPKKKW
Sbjct:    1 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPATKMDRIASTHERSNPWDMEWRNRNGIEQPVHNRRRTPPKKKW 147
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A835Z0N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 5.540e-23
Identity = 49/124 (39.52%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDME 684
            M FYQ + T + RT P  LT ++RR    +LE+GG+VR V NHGV+ L YRF ++  +   ++R+ + GRW S Y+DA P    K++  L  +D  +R +T +P  KM+ I++ H+ +NPW+ +
Sbjct:    1 MPFYQNVFTCKWRTPPEQLTRLYRRLCNTVLEDGGMVRCVENHGVKDLAYRFRARTAMSGSENRYHTRGRWVSMYFDARPETLDKIDADLKMQDFYLRSNTIKPVVKMNWISTRHK-TNPWERD 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A7S2IGM9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGM9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.170e-19
Identity = 44/121 (36.36%), Postives = 77/121 (63.64%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 675
            MVFY+ ++T +     T LT + +  ++ ++E GG+VR+V NHG+R LP+RF +K+  KE  +R++  GR+ S +YDASP V  K+E ++  +D+++R +  +   K+  I    E+ NP+
Sbjct:    1 MVFYECVLTAKNTAPFTSLTKLMKTISSTVVENGGIVRTVQNHGIRNLPHRFKAKYPDKE-GNRYYKKGRFISVWYDASPRVLAKVENEIRLDDQILRHTHLKARNKLWYINIASEKKNPY 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A6S8YXD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YXD6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.480e-19
Identity = 41/121 (33.88%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 675
            MVFY+ ++T +   +   LTN  +  +++++E GG+VR+V NHG+R LP+RF +++  KE  +R++  GR+ S +YDASP    ++E ++  +D+++R +  +   K+  I + +E+ NP+
Sbjct:    1 MVFYECVLTAKNTASFASLTNTVKSISSIVVESGGIVRTVQNHGIRNLPHRFKARYPDKE-GNRYYKEGRFISVWYDASPRTLNQVENEIRLDDQILRYTHLKARNKLWYINNPNEKKNPY 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A1E7FMF6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FMF6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 8.650e-18
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 675
            MVFY+ +++ +  T+   LT + ++ +  ++E GG+VRS+ NHG+R  P+RF +K+       R++  GR+ S YYD++P   K++E  L   D+V+RV+  +  +K+D I   HE+ NP+
Sbjct:    1 MVFYECVLSTKHTTHFKALTALMKQVSLKVVENGGIVRSIQNHGLRTFPHRFKAKYPDYLTQQRYYEQGRFISIYYDSNPTTLKQVETVLTMNDQVLRVTHLKSRSKLDWINYKHEK-NPY 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A7S1YM88_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YM88_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.110e-17
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 675
            MVFY+ ++T +       LT++ +  +  ++E GG+VRSV NHG+R L +RF ++H  ++   R F  GR+ S YYD+SPA+ +++ E L  ++ V+R +  R   K+D I + +++ NP+
Sbjct:    1 MVFYECVITAKNTAPFYQLTSLMKEISLKVVENGGIVRSVQNHGIRDLAHRFRARHPDRD-GTRLFQKGRFISVYYDSSPAIQEEVGEILVMDENVLRATHLRARNKLDTINNPYQKKNPY 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: K0TLA5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TLA5_THAOC)

HSP 1 Score: 89.7 bits (221), Expect = 1.680e-17
Identity = 44/123 (35.77%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:  307 AAMVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 675
            A MVFY+ ++T +  T+   LT++ +  +  I+E GG+VRS+ NHG+R LP+RF SK+  +E  +R++  GR+ S +YD++P  AK++E  L   ++++R +  R S + + +    E  NP+
Sbjct:   37 ADMVFYECLMTAKNTTHYNLLTSLMKEVSHKIVENGGIVRSIQNHGIRQLPHRFKSKYADRE-GNRYYEKGRFISVFYDSNPVTAKQVETILNLNEEILRNTHLRASNRFNEVNDLLESRNPY 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A6T7JZ88_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A6T7JZ88_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.920e-17
Identity = 43/121 (35.54%), Postives = 77/121 (63.64%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 675
            MVFY+ ++T +      +LTN+ +  +  ++E GG+VRSV NHG+R LP+RF +K+  KE  +R++  GR+ S +YDASP   ++++  L  +++V+R +  +P  K+      +E+ NP+
Sbjct:    1 MVFYECVLTAKNTAPFMNLTNLMKTVSLKVVERGGIVRSVQNHGIRDLPHRFKAKYPDKE-GNRYYKKGRFISVFYDASPHAREEVQAILDLDEEVLRNTHLKPRNKVTYANIVNEKKNPY 120
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A7S2MAY0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MAY0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.910e-16
Identity = 41/124 (33.06%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPWDME 684
            MVFY+ ++T +   +  +LT + +  +  I+  GG+VRS+ NHGVR LP+RF +K+  +E  +R++  GR+ S +YDASP + +++E  L  +++++R +  +   K   + +  E  NP+  E
Sbjct:    1 MVFYECLMTAKNTAHYNNLTALMKDISLKIVNNGGIVRSIQNHGVRQLPHRFRAKYADRE-GNRYYEKGRFVSVFYDASPGIMRQVEGILNLDEQILRNTHLKGRNKFMDVNNVREAKNPYIQE 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Match: A0A7R9ZLT6_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZLT6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.250e-15
Identity = 42/121 (34.71%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:  313 MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPYRFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVSTRRPSTKMDRIASTHERSNPW 675
            MVFY+ ++T +   +   LT++ ++ A  ++E GG+VRSV NHG+R  P ++ +K+       R F  GR+ S YYDA+P   K ++  L  +D+V+R +  +  +KMD I       NP+
Sbjct:    1 MVFYECLITTKNTAHFNALTSLVKQVAHTVVEGGGIVRSVQNHGIRQFPQKYKAKYPDFVTGQRAFDKGRFFSIYYDANPRTQKDVDILLSRDDQVLRRTHLKARSKMDFITIQRPDRNPY 121
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7671.18901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LLJ6_ECTSI9.810e-10098.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0N7_9STRA5.540e-2339.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2IGM9_9STRA6.170e-1936.36Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S8YXD6_9STRA9.480e-1933.88Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FMF6_9STRA8.650e-1835.54Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S1YM88_9STRA1.110e-1735.54Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
K0TLA5_THAOC1.680e-1735.77Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6T7JZ88_9STRA1.920e-1735.54Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A7S2MAY0_9STRA3.910e-1633.06Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9ZLT6_9STRA3.250e-1534.71Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7671contigEcto-sp13_S_contig7671:431..4344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score302.0
Seed ortholog evalue1.5e-79
Seed eggNOG ortholog2880.D8LLJ6
Model size1259
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Ribosomal protein S6
EggNOG OGs2E67R@1,2SCYQ@2759
Ec32 ortholog descriptionTranslation elongation factor EF1B/ribosomal protein S6
Ec32 orthologEc-04_005610.1
Cds size444
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7671.18901.1prot_Ecto-sp13_S_contig7671.18901.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7671 934..3288 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.3993607-UTR-Ecto-sp13_S_contig7671:430..9331681464037.3993607-UTR-Ecto-sp13_S_contig7671:430..933Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7671 431..933 -
1681464037.4449396-UTR-Ecto-sp13_S_contig7671:3288..35591681464037.4449396-UTR-Ecto-sp13_S_contig7671:3288..3559Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7671 3289..3559 -
1681464037.4560127-UTR-Ecto-sp13_S_contig7671:4303..43441681464037.4560127-UTR-Ecto-sp13_S_contig7671:4303..4344Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7671 4304..4344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464037.410488-CDS-Ecto-sp13_S_contig7671:933..11161681464037.410488-CDS-Ecto-sp13_S_contig7671:933..1116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7671 934..1116 -
1681464037.419788-CDS-Ecto-sp13_S_contig7671:1592..18351681464037.419788-CDS-Ecto-sp13_S_contig7671:1592..1835Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7671 1593..1835 -
1681464037.4318876-CDS-Ecto-sp13_S_contig7671:3270..32881681464037.4318876-CDS-Ecto-sp13_S_contig7671:3270..3288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7671 3271..3288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7671.18901.1

>prot_Ecto-sp13_S_contig7671.18901.1 ID=prot_Ecto-sp13_S_contig7671.18901.1|Name=mRNA_Ecto-sp13_S_contig7671.18901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MVFYQQIVTLRPRTNPTDLTNIFRRAAAVILEEGGVVRSVANHGVRVLPY
RFHSKHDIKEKDDRWFSSGRWASAYYDASPAVAKKMEEQLWAEDKVIRVS
TRRPSTKMDRIASTHERSNPWDMEWRKRNGIEQPVHNRRRTPPKKKW*
back to top

mRNA from alignment at Ecto-sp13_S_contig7671:431..4344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7671.18901.1 ID=mRNA_Ecto-sp13_S_contig7671.18901.1|Name=mRNA_Ecto-sp13_S_contig7671.18901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7671:431..4344- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGCTTCTTTTGCTGGCTGCGGAAATAGAGAGAGAGACAGTAAGTGAA
ATGAGTGAGTGAAATGAGTGGCACGCGCCGTTTGCCGCCGTGGCGACCGT
GCACGGTTTTAGATACACCGCACCTAAAAGAGAGCGGGTGTGTGCATGCG
GTTGAAGCTCCCTCTTCCATTGTTGTCTCCAAGAAATCGAAACGACCCGC
TGTTCTCGCTGTGGTACAACGTATTTATTGCATGTGACTGCGGTTGGATG
GTTGGTGTCGTCAAAAATAAAACATTTCAAGCAAGGGGCGTGGCCCTCGC
GCGCTCAAGCACAACTCGGAGAGAGACGCAACAAGCCTGCAGCAGCAGCA
GTTGCTGCACAACGCTTTCGTCAAGGGAGCAAGCCACAAGTCGAAAATCA
ACGTTGACTGTCAATGGTTCATCCGATGGATGCCACAAAACAAAAAACGG
AAGGTAGATCAAATCATGCGGCTCTTCCTCGTGATCGACCACAGACCACA
CTCGTGCTGGATATGCGGGGGTCGGACGGCACCTCCCCCTGTTGCAAACC
CTACGCATCAACGGGATAACAGTCCGCGACGGTAAACGCTACCAAACACG
CGCACCCGCGCGTCTTGTAAACCTGACGCTGTGAACAAACACAGCTGCCT
GCTGCTTGCTGTGCTGATCCCGCTCTCTCTTTCGTCCGTGCTGAAAAAAA
ATGATTTCGTGGTCTCAAGCCTCTGTTCCACACGATTCAACTGCAGCGCA
GACATCGCGTTCCTGTGCCTCACCTTCCCCCCCAGGTTCAACAGCGCGAC
TGGAGACGCAGCTAGTAGGGGCAACGGCGTTACTTTTCCCTCGCGGCAAG
GCGGTGGTATCGGTTGGCTGTTGGTCGTCATGATATTCGCTGTGGGGCAA
CGCAAATGGCTGAACCGCAAGGAGAGGTATGTAGCTTCTCAAGTCCATGA
AGACCCTGAGCACCGTCGCAAGCCTGCTCAAGCCCGCAACTAGCAAGTCG
CAGCAAGCGCAGCGGAGAGAGGCGGAGCGAAAGCGAGATAACGGGGCAAG
GCTGCCATGGTTTTTTACCAGCAGGTGCGTGCTGAGGGCCTTTCAAAGCT
CCGACCACGTGCTTTGTCATTTTCAGGAAAGAGGAGGCGCACTTCACTCC
CGCGATCCCTACCAAACGTTGGTAGATGCAGATCCCCCTACCCACGTGGT
ACCTTCCCGAAGTACGTGTTGTTGTGTGGTCTTATTGTCTTCCCACCCCA
CTGCCCCTATTGCCTGGTATCACCACCAGTACATGGTGTTCATCGCGCTG
AGGCAATACGAACACGGGTGAAGAACACATGTCGAACATGTGTTGCAGAC
TATTGCTCGTACACGAGCGTGCGGTGCCGAGTTCTAAATAAATGGGTTCG
TGGATTTCGCTACTCCCTTCCGGACTACTGCAGTCCTGTAGCATTGCCAT
CTGGGTACGTACTGTCGTATCCTCGGTTATTAAGACAAGAGCAGCTAGAA
CGCTGTTTTTTTTGTGTCATCTCGATTTGAATGAGAATCGGCTGTATTGC
CGCTCAATTTGCATACAAGTGTAGACTAGCGAGGTGGACATCCTGTCGAT
CGACGAAGTAAGAGAGTAGAAAATAAACTCTGAGAGATCTTGACTGAACA
AGCCTCGATCGTGGTGGATATTCCCAACCGGTTTATCGATGACACAACTA
AGCCCACGAACGTAGCGGTGATACCGCACTTGTTGTACTTGCAGAAATGA
CTGGACTCATCGTTCGTCCTTGGCAATGGGTACCCCCCCACCATATCTAC
GGCAGTGCTTCGAGATCCCATATGGTATACATAGATGCGTAGTTTCCACC
CGAAGGACCCTTCGACCGCCCCCGTCACACACCTTCGATTTGGAGATACC
GCAACTGCTGATACACTCTCAAAGACTCCTACCATCCGCTGCTGCTATTC
TAGATGCGTGTGCTTGACGGGACTTGAAGACACAAACAACGACCTGACTG
AGCTGGGAAATGTATGCACAGAAGGAAGGTGCAGGAGATGTGTTTGAGGC
ATGGAATAGCCAAGATAAGACGGTAGCTGTAATGGGGTATATAAAGTGGG
TGAAAGGCGGGAAGTGGTATCGATAGGATAGACAGGTTAGGGAAAACATT
ATTTCACCTTGGCAAAGTAGAAAGGAGCGATTGGCCAGCGGCGACTAGTC
CTGTGGGACCAATGCTCCGTCCTGTCGAGGACGCGTGGTCAATGGTCTAA
TCGCTGCGGCATTCGAAACCTAAGTACGCCCCCCCTCACTCAATGGTAAC
GATAGCGTTCACAGGGTTTTTCGTTTCTGCAATCATGTCGGATAGAACAT
GCAATCGGGGAAGTTGGGTTAGGGATAGAGGGTCTGCGCACCCCCTCCCT
GTTCTGTTGCTCGTGAACTTGTTTTCTCGCGCGGAAGGCGGTCCAAACAA
GAGCATTGCCCCCCCCCCCCCCCCAACTCTCCCCCCTCATTCCTTCCGCC
GCGACGAAGATCGTCACTCTCCGACCGCGGACGAACCCCACCGACCTCAC
CAACATCTTCCGACGGGCGGCCGCGGTCATCCTGGAGGAGGGCGGTGTCG
TGAGGTCGGTGGCCAACCACGGCGTGAGGGTGCTGCCCTACCGGTTTCAT
AGCAAGCACGATATCAAGGAGAAGGACGACAGGTGGTTCTCGTCAGGACG
GTGGGCCAGCGCGTACTACGACGCCAGCCCGGCGGTCGCGAAGAAGATGG
AGGTAGGTCGGTGCCGCGCAGCGTGTGTGTATGGCGGGAACGCGCGGTTT
GGTACGCTTTTCTTTGTATTTTTTGTCCTTCGGTAGATGTGAAACGAGGG
AATCGTCCTCGACAGACGTTGGGGAGTTTCTACCTTTATGAAGGTGGTCT
CCACACAGACAAGGTTTTAAAAAAACTTAAGCTCGTAACGCTTGTCTTAC
ATCAAAAAGTGCTGCTGCACCTTGTGTCGTTATTCGTGACGTACATTCTA
TTTGCGAAAATGTTGTCACAGAGCGGATGGCAAACACGAGTGTCGAAGCG
TGCATGCATGGAAATCCGCTCACGCCCCCTTGGCTCTGCGTGCTCCTACC
CTACAGTACTCCCTCCCGGTCAACCCCCCTAAGCTACCTTCGGCAATTCC
CCGCTCCATGCCTCACTGCTGTGTCCTGTTTCTTGCATCGCGCTCGATGC
TTTTCGTTTTCGGTTTCGTTTCGTTCAGGAACAATTGTGGGCGGAGGACA
AAGTAATTCGAGTCTCAACCCGGCGCCCGTCGACCAAGATGGACCGAATA
GCGTCCACTCACGAGCGGTCAAACCCTTGGGACATGGAGTGGAGGAAACG
CAACGGGATCGAGCAGCCAGTGCACAACCGGCGCCGCACCCCGCCCAAGA
AGAAGTGGTAGCAGCTTAGGTCTAATTAGCCGGCGTAGCGACATGAAAAT
AACTCGGAATAGGAGCGCGTGTGCACGTGTACACCTCGGGCGAGAGACTC
GAGCGGAATGGCCAGGCGCAGAGTGTTTTTTCCTTCTTGTGCCCGCACGG
CGCAAAGTTGGGGTCTCTCGTTGTCTGGGAACAAAGCGTTCTTTCATGTC
GAACGCTCATTAGTGTGTCTGTACCAAACAGACATTTCCGTATGAAATGG
AGAGGCTGCTGCCGGTTGAATTGCATCCAAGGCAACATGTTTGGACAGCA
AAATTGTTTGCAATACTGTATTTTGGTATCCGTCGGCTGCATTAGAACGC
CAGCTCTTTCCCTCTACGCTTCCTCGTCCCCTTCCGTCGGACCCTGCCGC
CAACCGTGCTCACTCCGAAGCAACGTGCCTGGTGTCTGCTGTGAGGCAAA
CATGTGGCCTTGGCGCTCTTGGGAAAGCAACCACGTTTACATTGTTGAAA
AGAACATATTATTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7671:431..4344-

>mRNA_Ecto-sp13_S_contig7671.18901.1 ID=mRNA_Ecto-sp13_S_contig7671.18901.1|Name=mRNA_Ecto-sp13_S_contig7671.18901.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7671:431..4344- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTTTTACCAGCAGATCGTCACTCTCCGACCGCGGACGAACCCCAC
CGACCTCACCAACATCTTCCGACGGGCGGCCGCGGTCATCCTGGAGGAGG
GCGGTGTCGTGAGGTCGGTGGCCAACCACGGCGTGAGGGTGCTGCCCTAC
CGGTTTCATAGCAAGCACGATATCAAGGAGAAGGACGACAGGTGGTTCTC
GTCAGGACGGTGGGCCAGCGCGTACTACGACGCCAGCCCGGCGGTCGCGA
AGAAGATGGAGGAACAATTGTGGGCGGAGGACAAAGTAATTCGAGTCTCA
ACCCGGCGCCCGTCGACCAAGATGGACCGAATAGCGTCCACTCACGAGCG
GTCAAACCCTTGGGACATGGAGTGGAGGAAACGCAACGGGATCGAGCAGC
CAGTGCACAACCGGCGCCGCACCCCGCCCAAGAAGAAGTGGTAG
back to top