mRNA_Ecto-sp13_S_contig766.18886.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig766.18886.1
Unique NamemRNA_Ecto-sp13_S_contig766.18886.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A6H5L297_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L297_9PHAE)

HSP 1 Score: 1027 bits (2656), Expect = 0.000e+0
Identity = 522/595 (87.73%), Postives = 535/595 (89.92%), Query Frame = 1
Query:    1 MISGGLEADGCCEIKASCVAGQGLFATKDLVKGQALFKETAFLVPGRRDDAAVIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFVLAYLSSTASIRSRVQELSSNMRPADTTTTAPATTTDNDGHDDKVXXXVDDNSNAIVTLVRREVAWLRKCDRDLRSLPSRELEGAVHRQATQIHVPPSSSIPLYWANCMGQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSAEGHSAPACRDGGPYNGDGTRRRPEEETVFAEWWKQSEMWVCQYCGWCSNIDSTCCDSAPSRSLHCKESVVSAEVFALVMAYTVDPRSPSASCTNVAPDGCSGSRGWPHHPDEQLQARRDAVKGMLETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGHRRPRSGSSHSSSPRVQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDA-RGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAVDLQC 1782
            MISGGLEADGCCEIKASCVAGQGLFATKDLV GQ LFKETAFLVPGRRD AA IAASSKLPPLSPITVQHKHCPPCVRLAPTDTGG+L GCYEET RF LAYLSSTASIRSRVQELS NM PADTT                 XXX   NSNAIVTLVRREVAWLRKCDRDLR LPSRELEGAVHRQ              YWANCMGQEGSLY RGSRFNHSCTANCTRVTLD GGVERAF+TLRPVAAGEELTLSYLPSGIEVMGTVVRRR+LWLSRGFLCSCDRCSRPQDEVRQVVCPECCK+Y SPLERRSSSGGRVVG+SRSAE HSAPACRDGGPYNGDG RRRPE E VFAEWWKQSEMWVCQYCGWCSNIDSTC DSAPSRSLHCKES+VSAEVFALVMA+TVDPRSPSASCTN+A DG SGSRGWPHHPDEQLQARRDA+KG+LETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDG RRPRSGS HSSS R+QPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDA RGCSAR+TVGGLQLLLGRVEAWV VFADEDQRRRFA+V AAVDLQC
Sbjct:    1 MISGGLEADGCCEIKASCVAGQGLFATKDLVTGQVLFKETAFLVPGRRDAAAEIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGILRGCYEETCRFALAYLSSTASIRSRVQELSPNMTPADTTXXXXXXXXXXXXXXXXXXXXXXXNSNAIVTLVRREVAWLRKCDRDLRRLPSRELEGAVHRQDRFT----------YWANCMGQEGSLYERGSRFNHSCTANCTRVTLDDGGVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKNYNSPLERRSSSGGRVVGSSRSAERHSAPACRDGGPYNGDGRRRRPEAEAVFAEWWKQSEMWVCQYCGWCSNIDSTCSDSAPSRSLHCKESIVSAEVFALVMAHTVDPRSPSASCTNMALDGRSGSRGWPHHPDEQLQARRDAIKGILETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGQRRPRSGSPHSSSLRIQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDATRGCSARNTVGGLQLLLGRVEAWVLVFADEDQRRRFAIVLAAVDLQC 585          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: D8LNS6_ECTSI (Set domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS6_ECTSI)

HSP 1 Score: 709 bits (1829), Expect = 7.510e-252
Identity = 397/597 (66.50%), Postives = 402/597 (67.34%), Query Frame = 1
Query:    1 MISGGLEADGCCEIKASCVAGQGLFATKDLVKGQALFKETAF-LVPGRRDDAAVIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFVLAYLSSTASIRSRVQELSSNMRPADTTTTAPATTTDNDGHDDKVXXXVDDNSN-AIVTLVRREVAWLRKCDRDLRSLPSRELEGAVHRQATQIHVPPSSSIPLYWANCMGQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSAEGHSAPACRDGGPYNGDGTRRRPEEETVFAEWWKQSEMWVCQYCGWCSNIDSTCCDSAPSRSLHCKESVVSAEVFALVMAYTVDPRSPSASCTNVAPDGCSGSRGWPHHPDEQLQARRDAVKGMLETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGHRRPRSGSSHSSSPRVQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDA-RGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAVDLQC 1782
            MISGGLEADGCCEIK SCVAGQGLFATKDLVKGQ LFKETAF LVPGRRDDAAV+AASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRF LAYLSSTASIRSRVQELSS+MRPADT                  XXX       AIVTLVRREVAWLRKCDRDLRSLPSREL GAVHR               YWANCMGQEGSLY RGSRFNHSCTANCTRVTLDGGGVERAF+TLRPVAAGEELTLSYLPSGIEVMGTVVRRR+LWLSRGFLCSCDRCSRP DEVRQVVCPECCK Y SP ERRSSSGGRVVG+SRSAEGHS P CRDGGPY G G RRRPEEETVFAEWWKQSEMW                                                                                                                                         PEFLDWAMRELNALEQWLGAALG VTSHPPAYYIFDLVCDLLDA RGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAV LQC
Sbjct:    1 MISGGLEADGCCEIKISCVAGQGLFATKDLVKGQVLFKETAFFLVPGRRDDAAVVAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFALAYLSSTASIRSRVQELSSSMRPADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIVTLVRREVAWLRKCDRDLRSLPSRELVGAVHR---------------YWANCMGQEGSLYERGSRFNHSCTANCTRVTLDGGGVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPHDEVRQVVCPECCKGYNSPQERRSSSGGRVVGSSRSAEGHSTPTCRDGGPYKGGGARRRPEEETVFAEWWKQSEMW-----------------------------------------------------------------------------------------------------------------------------------------PEFLDWAMRELNALEQWLGAALGPVTSHPPAYYIFDLVCDLLDATRGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAVHLQC 445          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A813HXD0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HXD0_POLGL)

HSP 1 Score: 76.6 bits (187), Expect = 5.550e-11
Identity = 58/176 (32.95%), Postives = 75/176 (42.61%), Query Frame = 1
Query:  622 GQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSAEGHSAPACRDGGPYNGDGTRRRPEEETVFAEWWKQSEMWVCQYC----GWCSNID 1137
            G    LY RG R NHSC  +      D G +    + LRP+ AGEE+T+SY+     +  +  RR+ L L+ GF C+C RC+ P D  R + CP C     S     S     V   +  AE     AC   G + G GT      +   AE       WV  YC     WC   D
Sbjct:   27 GGRTGLYARGCRANHSCRPSARLCISDSGRLR--LVALRPIEAGEEITVSYMAESDLLRPSSSRRKLLDLTWGFQCTCARCAGPDDR-RTLRCPACAARGCSERGLVSFQSKPVKLGAAWAEIDGWAACSKCGAF-GAGTSLAETRDLSRAE-----SSWVLSYCRRLPAWCRGAD 193          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A7S1LTZ7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LTZ7_ALECA)

HSP 1 Score: 75.1 bits (183), Expect = 1.390e-10
Identity = 52/136 (38.24%), Postives = 67/136 (49.26%), Query Frame = 1
Query:  619 MGQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSA---EGHSAPACRDG 1017
            M    ++Y   SRFNHSC  N  +     G V  +  TLR VA GEELT+SYL   + V  T  RR  L    GF C C+RC+   D +R   CP C  +  + LE R    G+   +  +A   EG  A AC +G
Sbjct:  261 MSHSCAVYRTASRFNHSCGPNTEKSFSSDGRV--SLRTLRDVAVGEELTVSYLGDEMLVRCTARRRFPLTNGWGFHCQCERCAAASDALRAFRCPSCGGEVRAGLEERGGLLGQACSHCGTALCEEG--AAACFEG 392          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A812XSP0_SYMPI (SET5 protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XSP0_SYMPI)

HSP 1 Score: 74.3 bits (181), Expect = 3.770e-10
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  634 SLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSG 954
            +LY    R NHSC     R++++  G  R  + L P+ AG+E+T+SYL     +  + +RR+ L  + GFLCSC RC++P D  R  +CP CC   I    R    G
Sbjct:  158 ALYATACRANHSCLPRA-RLSVEADGRVR-LVALTPIRAGDEVTVSYLSESDLLEPSSIRRKLLRQTWGFLCSCQRCTQPDDR-RSYLCPSCCSGMIGFQSRHVQLG 261          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A812SVU1_9DINO (MCTP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812SVU1_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 3.830e-8
Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 1
Query:  637 LYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVV 966
            LY    R NHSC     R+++D  G  R  + L  ++AGEE+T+SYL     +  + +RR+ L  + GFLC+C RC+ P D  R   CP C    I    R    GG   
Sbjct:  442 LYATACRANHSCLPRA-RLSVDADGGVR-IVALTSISAGEEVTVSYLSESDLLEPSSIRRKLLSQTWGFLCTCQRCTMPDDR-RTYTCPSCRDGLIGFRSRYVQLGGATA 548          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A812PIX4_SYMPI (Smyd3 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812PIX4_SYMPI)

HSP 1 Score: 67.0 bits (162), Expect = 6.040e-8
Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  631 GSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVC 900
            G ++   SR NHSC  NC      G    R   TLRP+A GEELT+SYL   + ++ T  R+  LW S+ F+C C RC+  +D +R   C
Sbjct:   82 GRIFWTLSRINHSCAPNCVFTNSPGRWGLR---TLRPIAKGEELTISYLGEEL-LLPTSQRKWLLWRSKCFVCQCLRCTSTEDPLRDRAC 167          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A7S4RLY1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RLY1_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 3.580e-7
Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 1
Query:  652 SRFNHSCTANCT-RVTLDGG--GVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGG 957
            S+FNH+C  +   R++      G E      R +AAGEE+T+SYL      M    R R+L+ +  F C+C  CS   DE+R+V CP C          R++SGG
Sbjct:  146 SKFNHACAPSAEWRISQASSKAGSEALLYAARGIAAGEEITISYLGHK-GFMSAAARGRWLYDTHAFRCACTLCSAGVDELRRVPCPRCQLRLAGRTTGRAASGG 249          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A7S4Q4N4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q4N4_9DINO)

HSP 1 Score: 63.5 bits (153), Expect = 4.380e-7
Identity = 40/102 (39.22%), Postives = 51/102 (50.00%), Query Frame = 1
Query:  652 SRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGG 957
            +R NHSC  N  R     G  E     LRP+AAGEELT+SY+   + +  T  RR  L     FLC C+RC  P D +R   C E C   +     R++ GG
Sbjct:  247 ARLNHSCLPNALRGPGQRGAAE--VRALRPIAAGEELTISYVAEALLLSPTPERRAALRGQWQFLCGCERCRAP-DALRAFRCGEACGGSL-----RAAGGG 340          
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A813CQ29_9DINO (Mctp1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CQ29_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 5.160e-7
Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 1
Query:  637 LYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVV 966
            LY    R NHSC     R+++D  G  R  + L  +  GEE+T+SYL     +  + +RR+ L  + GFLC+C RC+ P D  R   CP C +  I    +    GG   
Sbjct:  923 LYATACRANHSCLPRA-RLSVDADGGVR-IVALTSIRVGEEVTVSYLSESDLLEPSSIRRKLLSQTWGFLCTCQRCTMPDDR-RTYTCPSCREGRIGFRSQYVQLGGATA 1029          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L297_9PHAE0.000e+087.73SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LNS6_ECTSI7.510e-25266.50Set domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A813HXD0_POLGL5.550e-1132.95Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1LTZ7_ALECA1.390e-1038.24Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812XSP0_SYMPI3.770e-1037.38SET5 protein (Fragment) n=1 Tax=Symbiodinium pilos... [more]
A0A812SVU1_9DINO3.830e-836.36MCTP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A812PIX4_SYMPI6.040e-841.11Smyd3 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A7S4RLY1_9DINO3.580e-736.19Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S4Q4N4_9DINO4.380e-739.22Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A813CQ29_9DINO5.160e-734.55Mctp1 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig766contigEcto-sp13_S_contig766:9616..11968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score66.6
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog5693.XP_811771.1
Model size1903
KEGG koko:K11426
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
EggNOG OGs3XX7H@5653,COG2940@1,KOG2084@2759
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-08_006000.1
Cds size1785
COG Functional cat.B
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.1539752-UTR-Ecto-sp13_S_contig766:9615..97331681464036.1539752-UTR-Ecto-sp13_S_contig766:9615..9733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig766 9616..9733 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464036.1858778-CDS-Ecto-sp13_S_contig766:9733..109161681464036.1858778-CDS-Ecto-sp13_S_contig766:9733..10916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig766 9734..10916 -
1681464036.1973538-CDS-Ecto-sp13_S_contig766:11366..119681681464036.1973538-CDS-Ecto-sp13_S_contig766:11366..11968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig766 11367..11968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig766.18886.1prot_Ecto-sp13_S_contig766.18886.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig766 9734..11968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig766.18886.1

>prot_Ecto-sp13_S_contig766.18886.1 ID=prot_Ecto-sp13_S_contig766.18886.1|Name=mRNA_Ecto-sp13_S_contig766.18886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=595bp
MISGGLEADGCCEIKASCVAGQGLFATKDLVKGQALFKETAFLVPGRRDD
AAVIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFVL
AYLSSTASIRSRVQELSSNMRPADTTTTAPATTTDNDGHDDKVDDDVDDN
SNAIVTLVRREVAWLRKCDRDLRSLPSRELEGAVHRQATQIHVPPSSSIP
LYWANCMGQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAA
GEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVC
PECCKDYISPLERRSSSGGRVVGNSRSAEGHSAPACRDGGPYNGDGTRRR
PEEETVFAEWWKQSEMWVCQYCGWCSNIDSTCCDSAPSRSLHCKESVVSA
EVFALVMAYTVDPRSPSASCTNVAPDGCSGSRGWPHHPDEQLQARRDAVK
GMLETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGHRRPRSGSSHSSS
PRVQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDARG
CSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAVDLQC*
back to top

mRNA from alignment at Ecto-sp13_S_contig766:9616..11968-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig766.18886.1 ID=mRNA_Ecto-sp13_S_contig766.18886.1|Name=mRNA_Ecto-sp13_S_contig766.18886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig766:9616..11968- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTTCGGGCGGGCTGGAGGCCGATGGTTGCTGTGAAATCAAAGCCTC ATGCGTAGCTGGCCAGGGATTGTTTGCGACCAAGGATTTGGTGAAAGGGC AAGCGTTGTTCAAAGAGACGGCATTCTTGGTGCCTGGTCGACGTGATGAT GCCGCGGTAATAGCCGCATCCTCGAAGCTGCCTCCCCTCTCTCCCATCAC CGTTCAGCACAAGCACTGCCCCCCATGCGTCAGACTCGCCCCAACAGATA CGGGAGGCGTCTTGAGCGGCTGCTACGAGGAAACCTACCGCTTTGTGCTT GCCTACCTTTCGTCCACTGCGAGCATCCGATCTCGAGTGCAGGAGCTTTC TTCGAACATGCGACCTGCTGACACCACAACCACTGCTCCCGCCACCACCA CCGACAACGACGGCCATGATGACAAAGTCGACGACGATGTCGACGACAAC AGCAATGCTATTGTCACGCTTGTTCGACGTGAAGTTGCTTGGTTGAGGAA GTGCGATCGCGACCTGCGCAGCTTGCCCTCGCGTGAGCTTGAAGGAGCGG TCCACAGGCAAGCCACGCAGATACATGTACCACCATCATCATCGATACCG CTGTCTGCCTCCATCTGAACGTCCACCACCTACATGTGTATGTACCTCTG TAACGTCTACATACATCGCACGCAAGTGCGATAGTCCATCTTTTACACAT CGCATGCAAGTGCGATAGTCCATCTATTTACGACATCGTAGTAGGAACAC GTCATTCGTAACGACCACATACATTCTGTATCCGAAATGCTGTCGCTGAT GTGAGAAGAACCAGGATTGTCCGTTCCCATTAGGTAGGAGGTATGTCAAG CTTGGGTATGCATACAACCAGGCATTTGGTCGCCGGCACACGAGCTTGTT TATCAAGTTTTTGACGCCGTGCGTCGCCTATTTTACGTATGGGAGGACCG TTCCTTGCCTGCCCTGACTCTAGGGAGAGTTTGCACCACTCGCCCGACCA CCGACAGGCTGAATGAAAAATCACCCTGGTACATGTAACCCGCTCGCTTC AGGTATTGGGCGAACTGCATGGGTCAAGAAGGTTCGCTGTATGGGCGTGG CTCCCGTTTCAACCACAGCTGTACTGCCAACTGCACTCGCGTTACGCTCG ATGGTGGCGGCGTGGAACGAGCGTTCATAACCCTGCGGCCTGTCGCCGCA GGAGAGGAGCTGACCCTTAGTTACCTGCCCTCCGGAATCGAGGTTATGGG AACCGTTGTTCGCCGGCGATATTTATGGTTGTCACGGGGGTTTCTGTGCA GCTGTGACCGGTGCTCGCGACCGCAAGATGAAGTTCGGCAAGTGGTGTGC CCTGAGTGCTGCAAAGACTACATCTCACCACTTGAGCGGCGCTCGAGTAG CGGAGGGAGGGTTGTGGGCAACTCAAGGTCGGCGGAGGGGCACTCCGCTC CTGCTTGTCGCGATGGCGGTCCTTACAACGGGGATGGAACGCGCCGGCGA CCTGAAGAAGAAACGGTGTTCGCTGAATGGTGGAAACAGAGCGAGATGTG GGTATGTCAGTATTGCGGGTGGTGCAGCAATATCGACAGTACTTGCTGTG ACAGTGCACCATCGCGAAGCCTGCACTGCAAAGAGAGCGTTGTGAGCGCA GAGGTATTTGCGCTAGTCATGGCCTATACCGTTGATCCCCGTTCACCAAG TGCCAGTTGCACCAATGTGGCACCGGACGGCTGCAGCGGGAGCCGGGGGT GGCCGCACCACCCTGATGAGCAGCTACAGGCGAGGCGCGACGCGGTTAAG GGTATGCTAGAGACATCTGTCGCCGTTCTGGGCAGACGGCACTGGACGAC GTTTAGTTGTGCCTATCTGCGGCTGAAGTTAGAGCTCTCCGCTCGGTCGA CCGATGATGGCCATAGACGTCCTCGGTCGGGTTCGTCCCATTCCTCATCG CCTAGAGTACAGCCGGAGTTCTTGGACTGGGCCATGCGAGAACTGAACGC GCTGGAGCAGTGGCTAGGCGCCGCGCTGGGATCTGTGACGTCGCACCCGC CGGCATATTATATTTTCGATCTCGTTTGCGACTTGCTCGATGCGAGAGGC TGCTCCGCACGCGACACCGTTGGGGGACTGCAATTGTTGCTGGGCAGAGT CGAGGCGTGGGTTTCGGTTTTTGCAGACGAAGACCAGCGTCGAAGGTTCG CGGTCGTGTCGGCGGCAGTTGATTTGCAGTGTTGACACCGTCGTTGCTCC TTAGCCCCCGCTGTCTCAAGCTTCGTCTCTCAGCGTTGTATCGCGTGTAC TCCGGAGGATTACCTAAGATGCTCACATTGCTGTCGTATCAGCGAAACGG TAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig766:9616..11968-

>mRNA_Ecto-sp13_S_contig766.18886.1 ID=mRNA_Ecto-sp13_S_contig766.18886.1|Name=mRNA_Ecto-sp13_S_contig766.18886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1785bp|location=Sequence derived from alignment at Ecto-sp13_S_contig766:9616..11968- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTTCGGGCGGGCTGGAGGCCGATGGTTGCTGTGAAATCAAAGCCTC
ATGCGTAGCTGGCCAGGGATTGTTTGCGACCAAGGATTTGGTGAAAGGGC
AAGCGTTGTTCAAAGAGACGGCATTCTTGGTGCCTGGTCGACGTGATGAT
GCCGCGGTAATAGCCGCATCCTCGAAGCTGCCTCCCCTCTCTCCCATCAC
CGTTCAGCACAAGCACTGCCCCCCATGCGTCAGACTCGCCCCAACAGATA
CGGGAGGCGTCTTGAGCGGCTGCTACGAGGAAACCTACCGCTTTGTGCTT
GCCTACCTTTCGTCCACTGCGAGCATCCGATCTCGAGTGCAGGAGCTTTC
TTCGAACATGCGACCTGCTGACACCACAACCACTGCTCCCGCCACCACCA
CCGACAACGACGGCCATGATGACAAAGTCGACGACGATGTCGACGACAAC
AGCAATGCTATTGTCACGCTTGTTCGACGTGAAGTTGCTTGGTTGAGGAA
GTGCGATCGCGACCTGCGCAGCTTGCCCTCGCGTGAGCTTGAAGGAGCGG
TCCACAGGCAAGCCACGCAGATACATGTACCACCATCATCATCGATACCG
CTGTATTGGGCGAACTGCATGGGTCAAGAAGGTTCGCTGTATGGGCGTGG
CTCCCGTTTCAACCACAGCTGTACTGCCAACTGCACTCGCGTTACGCTCG
ATGGTGGCGGCGTGGAACGAGCGTTCATAACCCTGCGGCCTGTCGCCGCA
GGAGAGGAGCTGACCCTTAGTTACCTGCCCTCCGGAATCGAGGTTATGGG
AACCGTTGTTCGCCGGCGATATTTATGGTTGTCACGGGGGTTTCTGTGCA
GCTGTGACCGGTGCTCGCGACCGCAAGATGAAGTTCGGCAAGTGGTGTGC
CCTGAGTGCTGCAAAGACTACATCTCACCACTTGAGCGGCGCTCGAGTAG
CGGAGGGAGGGTTGTGGGCAACTCAAGGTCGGCGGAGGGGCACTCCGCTC
CTGCTTGTCGCGATGGCGGTCCTTACAACGGGGATGGAACGCGCCGGCGA
CCTGAAGAAGAAACGGTGTTCGCTGAATGGTGGAAACAGAGCGAGATGTG
GGTATGTCAGTATTGCGGGTGGTGCAGCAATATCGACAGTACTTGCTGTG
ACAGTGCACCATCGCGAAGCCTGCACTGCAAAGAGAGCGTTGTGAGCGCA
GAGGTATTTGCGCTAGTCATGGCCTATACCGTTGATCCCCGTTCACCAAG
TGCCAGTTGCACCAATGTGGCACCGGACGGCTGCAGCGGGAGCCGGGGGT
GGCCGCACCACCCTGATGAGCAGCTACAGGCGAGGCGCGACGCGGTTAAG
GGTATGCTAGAGACATCTGTCGCCGTTCTGGGCAGACGGCACTGGACGAC
GTTTAGTTGTGCCTATCTGCGGCTGAAGTTAGAGCTCTCCGCTCGGTCGA
CCGATGATGGCCATAGACGTCCTCGGTCGGGTTCGTCCCATTCCTCATCG
CCTAGAGTACAGCCGGAGTTCTTGGACTGGGCCATGCGAGAACTGAACGC
GCTGGAGCAGTGGCTAGGCGCCGCGCTGGGATCTGTGACGTCGCACCCGC
CGGCATATTATATTTTCGATCTCGTTTGCGACTTGCTCGATGCGAGAGGC
TGCTCCGCACGCGACACCGTTGGGGGACTGCAATTGTTGCTGGGCAGAGT
CGAGGCGTGGGTTTCGGTTTTTGCAGACGAAGACCAGCGTCGAAGGTTCG
CGGTCGTGTCGGCGGCAGTTGATTTGCAGTGTTGA
back to top