mRNA_Ecto-sp13_S_contig766.18886.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A6H5L297_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L297_9PHAE) HSP 1 Score: 1027 bits (2656), Expect = 0.000e+0 Identity = 522/595 (87.73%), Postives = 535/595 (89.92%), Query Frame = 1
Query: 1 MISGGLEADGCCEIKASCVAGQGLFATKDLVKGQALFKETAFLVPGRRDDAAVIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFVLAYLSSTASIRSRVQELSSNMRPADTTTTAPATTTDNDGHDDKVXXXVDDNSNAIVTLVRREVAWLRKCDRDLRSLPSRELEGAVHRQATQIHVPPSSSIPLYWANCMGQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSAEGHSAPACRDGGPYNGDGTRRRPEEETVFAEWWKQSEMWVCQYCGWCSNIDSTCCDSAPSRSLHCKESVVSAEVFALVMAYTVDPRSPSASCTNVAPDGCSGSRGWPHHPDEQLQARRDAVKGMLETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGHRRPRSGSSHSSSPRVQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDA-RGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAVDLQC 1782
MISGGLEADGCCEIKASCVAGQGLFATKDLV GQ LFKETAFLVPGRRD AA IAASSKLPPLSPITVQHKHCPPCVRLAPTDTGG+L GCYEET RF LAYLSSTASIRSRVQELS NM PADTT XXX NSNAIVTLVRREVAWLRKCDRDLR LPSRELEGAVHRQ YWANCMGQEGSLY RGSRFNHSCTANCTRVTLD GGVERAF+TLRPVAAGEELTLSYLPSGIEVMGTVVRRR+LWLSRGFLCSCDRCSRPQDEVRQVVCPECCK+Y SPLERRSSSGGRVVG+SRSAE HSAPACRDGGPYNGDG RRRPE E VFAEWWKQSEMWVCQYCGWCSNIDSTC DSAPSRSLHCKES+VSAEVFALVMA+TVDPRSPSASCTN+A DG SGSRGWPHHPDEQLQARRDA+KG+LETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDG RRPRSGS HSSS R+QPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDA RGCSAR+TVGGLQLLLGRVEAWV VFADEDQRRRFA+V AAVDLQC
Sbjct: 1 MISGGLEADGCCEIKASCVAGQGLFATKDLVTGQVLFKETAFLVPGRRDAAAEIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGILRGCYEETCRFALAYLSSTASIRSRVQELSPNMTPADTTXXXXXXXXXXXXXXXXXXXXXXXNSNAIVTLVRREVAWLRKCDRDLRRLPSRELEGAVHRQDRFT----------YWANCMGQEGSLYERGSRFNHSCTANCTRVTLDDGGVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKNYNSPLERRSSSGGRVVGSSRSAERHSAPACRDGGPYNGDGRRRRPEAEAVFAEWWKQSEMWVCQYCGWCSNIDSTCSDSAPSRSLHCKESIVSAEVFALVMAHTVDPRSPSASCTNMALDGRSGSRGWPHHPDEQLQARRDAIKGILETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGQRRPRSGSPHSSSLRIQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDATRGCSARNTVGGLQLLLGRVEAWVLVFADEDQRRRFAIVLAAVDLQC 585
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: D8LNS6_ECTSI (Set domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNS6_ECTSI) HSP 1 Score: 709 bits (1829), Expect = 7.510e-252 Identity = 397/597 (66.50%), Postives = 402/597 (67.34%), Query Frame = 1
Query: 1 MISGGLEADGCCEIKASCVAGQGLFATKDLVKGQALFKETAF-LVPGRRDDAAVIAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFVLAYLSSTASIRSRVQELSSNMRPADTTTTAPATTTDNDGHDDKVXXXVDDNSN-AIVTLVRREVAWLRKCDRDLRSLPSRELEGAVHRQATQIHVPPSSSIPLYWANCMGQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSAEGHSAPACRDGGPYNGDGTRRRPEEETVFAEWWKQSEMWVCQYCGWCSNIDSTCCDSAPSRSLHCKESVVSAEVFALVMAYTVDPRSPSASCTNVAPDGCSGSRGWPHHPDEQLQARRDAVKGMLETSVAVLGRRHWTTFSCAYLRLKLELSARSTDDGHRRPRSGSSHSSSPRVQPEFLDWAMRELNALEQWLGAALGSVTSHPPAYYIFDLVCDLLDA-RGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAVDLQC 1782
MISGGLEADGCCEIK SCVAGQGLFATKDLVKGQ LFKETAF LVPGRRDDAAV+AASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRF LAYLSSTASIRSRVQELSS+MRPADT XXX AIVTLVRREVAWLRKCDRDLRSLPSREL GAVHR YWANCMGQEGSLY RGSRFNHSCTANCTRVTLDGGGVERAF+TLRPVAAGEELTLSYLPSGIEVMGTVVRRR+LWLSRGFLCSCDRCSRP DEVRQVVCPECCK Y SP ERRSSSGGRVVG+SRSAEGHS P CRDGGPY G G RRRPEEETVFAEWWKQSEMW PEFLDWAMRELNALEQWLGAALG VTSHPPAYYIFDLVCDLLDA RGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAV LQC
Sbjct: 1 MISGGLEADGCCEIKISCVAGQGLFATKDLVKGQVLFKETAFFLVPGRRDDAAVVAASSKLPPLSPITVQHKHCPPCVRLAPTDTGGVLSGCYEETYRFALAYLSSTASIRSRVQELSSSMRPADTXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIVTLVRREVAWLRKCDRDLRSLPSRELVGAVHR---------------YWANCMGQEGSLYERGSRFNHSCTANCTRVTLDGGGVERAFMTLRPVAAGEELTLSYLPSGIEVMGTVVRRRHLWLSRGFLCSCDRCSRPHDEVRQVVCPECCKGYNSPQERRSSSGGRVVGSSRSAEGHSTPTCRDGGPYKGGGARRRPEEETVFAEWWKQSEMW-----------------------------------------------------------------------------------------------------------------------------------------PEFLDWAMRELNALEQWLGAALGPVTSHPPAYYIFDLVCDLLDATRGCSARDTVGGLQLLLGRVEAWVSVFADEDQRRRFAVVSAAVHLQC 445
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A813HXD0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HXD0_POLGL) HSP 1 Score: 76.6 bits (187), Expect = 5.550e-11 Identity = 58/176 (32.95%), Postives = 75/176 (42.61%), Query Frame = 1
Query: 622 GQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSAEGHSAPACRDGGPYNGDGTRRRPEEETVFAEWWKQSEMWVCQYC----GWCSNID 1137
G LY RG R NHSC + D G + + LRP+ AGEE+T+SY+ + + RR+ L L+ GF C+C RC+ P D R + CP C S S V + AE AC G + G GT + AE WV YC WC D
Sbjct: 27 GGRTGLYARGCRANHSCRPSARLCISDSGRLR--LVALRPIEAGEEITVSYMAESDLLRPSSSRRKLLDLTWGFQCTCARCAGPDDR-RTLRCPACAARGCSERGLVSFQSKPVKLGAAWAEIDGWAACSKCGAF-GAGTSLAETRDLSRAE-----SSWVLSYCRRLPAWCRGAD 193
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A7S1LTZ7_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1LTZ7_ALECA) HSP 1 Score: 75.1 bits (183), Expect = 1.390e-10 Identity = 52/136 (38.24%), Postives = 67/136 (49.26%), Query Frame = 1
Query: 619 MGQEGSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVVGNSRSA---EGHSAPACRDG 1017
M ++Y SRFNHSC N + G V + TLR VA GEELT+SYL + V T RR L GF C C+RC+ D +R CP C + + LE R G+ + +A EG A AC +G
Sbjct: 261 MSHSCAVYRTASRFNHSCGPNTEKSFSSDGRV--SLRTLRDVAVGEELTVSYLGDEMLVRCTARRRFPLTNGWGFHCQCERCAAASDALRAFRCPSCGGEVRAGLEERGGLLGQACSHCGTALCEEG--AAACFEG 392
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A812XSP0_SYMPI (SET5 protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XSP0_SYMPI) HSP 1 Score: 74.3 bits (181), Expect = 3.770e-10 Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 634 SLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSG 954
+LY R NHSC R++++ G R + L P+ AG+E+T+SYL + + +RR+ L + GFLCSC RC++P D R +CP CC I R G
Sbjct: 158 ALYATACRANHSCLPRA-RLSVEADGRVR-LVALTPIRAGDEVTVSYLSESDLLEPSSIRRKLLRQTWGFLCSCQRCTQPDDR-RSYLCPSCCSGMIGFQSRHVQLG 261
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A812SVU1_9DINO (MCTP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812SVU1_9DINO) HSP 1 Score: 68.2 bits (165), Expect = 3.830e-8 Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 1
Query: 637 LYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVV 966
LY R NHSC R+++D G R + L ++AGEE+T+SYL + + +RR+ L + GFLC+C RC+ P D R CP C I R GG
Sbjct: 442 LYATACRANHSCLPRA-RLSVDADGGVR-IVALTSISAGEEVTVSYLSESDLLEPSSIRRKLLSQTWGFLCTCQRCTMPDDR-RTYTCPSCRDGLIGFRSRYVQLGGATA 548
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A812PIX4_SYMPI (Smyd3 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812PIX4_SYMPI) HSP 1 Score: 67.0 bits (162), Expect = 6.040e-8 Identity = 37/90 (41.11%), Postives = 50/90 (55.56%), Query Frame = 1
Query: 631 GSLYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVC 900
G ++ SR NHSC NC G R TLRP+A GEELT+SYL + ++ T R+ LW S+ F+C C RC+ +D +R C
Sbjct: 82 GRIFWTLSRINHSCAPNCVFTNSPGRWGLR---TLRPIAKGEELTISYLGEEL-LLPTSQRKWLLWRSKCFVCQCLRCTSTEDPLRDRAC 167
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A7S4RLY1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RLY1_9DINO) HSP 1 Score: 64.7 bits (156), Expect = 3.580e-7 Identity = 38/105 (36.19%), Postives = 54/105 (51.43%), Query Frame = 1
Query: 652 SRFNHSCTANCT-RVTLDGG--GVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGG 957
S+FNH+C + R++ G E R +AAGEE+T+SYL M R R+L+ + F C+C CS DE+R+V CP C R++SGG
Sbjct: 146 SKFNHACAPSAEWRISQASSKAGSEALLYAARGIAAGEEITISYLGHK-GFMSAAARGRWLYDTHAFRCACTLCSAGVDELRRVPCPRCQLRLAGRTTGRAASGG 249
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A7S4Q4N4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q4N4_9DINO) HSP 1 Score: 63.5 bits (153), Expect = 4.380e-7 Identity = 40/102 (39.22%), Postives = 51/102 (50.00%), Query Frame = 1
Query: 652 SRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGG 957
+R NHSC N R G E LRP+AAGEELT+SY+ + + T RR L FLC C+RC P D +R C E C + R++ GG
Sbjct: 247 ARLNHSCLPNALRGPGQRGAAE--VRALRPIAAGEELTISYVAEALLLSPTPERRAALRGQWQFLCGCERCRAP-DALRAFRCGEACGGSL-----RAAGGG 340
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Match: A0A813CQ29_9DINO (Mctp1 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CQ29_9DINO) HSP 1 Score: 64.7 bits (156), Expect = 5.160e-7 Identity = 38/110 (34.55%), Postives = 54/110 (49.09%), Query Frame = 1
Query: 637 LYGRGSRFNHSCTANCTRVTLDGGGVERAFITLRPVAAGEELTLSYLPSGIEVMGTVVRRRYLWLSRGFLCSCDRCSRPQDEVRQVVCPECCKDYISPLERRSSSGGRVV 966
LY R NHSC R+++D G R + L + GEE+T+SYL + + +RR+ L + GFLC+C RC+ P D R CP C + I + GG
Sbjct: 923 LYATACRANHSCLPRA-RLSVDADGGVR-IVALTSIRVGEEVTVSYLSESDLLEPSSIRRKLLSQTWGFLCTCQRCTMPDDR-RTYTCPSCREGRIGFRSQYVQLGGATA 1029 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig766.18886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig766.18886.1 >prot_Ecto-sp13_S_contig766.18886.1 ID=prot_Ecto-sp13_S_contig766.18886.1|Name=mRNA_Ecto-sp13_S_contig766.18886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=595bp MISGGLEADGCCEIKASCVAGQGLFATKDLVKGQALFKETAFLVPGRRDDback to top mRNA from alignment at Ecto-sp13_S_contig766:9616..11968- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig766.18886.1 ID=mRNA_Ecto-sp13_S_contig766.18886.1|Name=mRNA_Ecto-sp13_S_contig766.18886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig766:9616..11968- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig766:9616..11968- >mRNA_Ecto-sp13_S_contig766.18886.1 ID=mRNA_Ecto-sp13_S_contig766.18886.1|Name=mRNA_Ecto-sp13_S_contig766.18886.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1785bp|location=Sequence derived from alignment at Ecto-sp13_S_contig766:9616..11968- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |