prot_Ecto-sp13_S_contig765.18870.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig765.18870.1
Unique Nameprot_Ecto-sp13_S_contig765.18870.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length163
Homology
BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: A0A6H5JAN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN6_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 3.930e-97
Identity = 152/163 (93.25%), Postives = 152/163 (93.25%), Query Frame = 0
Query:    1 DDPATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 163
            DDP TLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE          GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE
Sbjct:   64 DDPETLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE----------GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 216          
BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: D7FL61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL61_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 2.710e-94
Identity = 152/163 (93.25%), Postives = 152/163 (93.25%), Query Frame = 0
Query:    1 DDPATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 163
            DDP TLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE          GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE
Sbjct:   21 DDPETLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE----------GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 173          
BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: A0A482RWK0_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWK0_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-8
Identity = 36/136 (26.47%), Postives = 65/136 (47.79%), Query Frame = 0
Query:   25 DEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAP 160
            D+F+EL+ ALF FD++   +I ++   LL H VS N+  +  A+ + V         L  +    I    +G +D         +H  ++    L P+  + L  +L + +PH+RL    ++DY    LR+++  P
Sbjct:   23 DKFRELLIALFHFDFKSEHRINKALCELLVHFVSVNALHLPNALELFVNRFRSIRATLSSDNPSQID---KGFLD--------TIHETIRRLCILTPTAPTLLLSILYKEFPHKRLDPATITDYVAQVLRLLEARP 147          
BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: A0A6A3TZ42_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TZ42_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-6
Identity = 25/74 (33.78%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    4 ATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDW--RGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNL 75
            AT  +++  L +C++ ++++P  ++ L+D LF+ D    G    V+ ++  + HLVS+N+  ++PA+HMLVRN+
Sbjct:   50 ATRRKIFRALPRCISTMAREPRAYRALLDVLFKCDLLASGDPLEVEDYTSFIVHLVSSNTVYVLPALHMLVRNM 123          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JAN6_9PHAE3.930e-9793.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL61_ECTSI2.710e-9493.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482RWK0_9ARCH1.210e-826.47Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A6A3TZ42_9STRA3.470e-633.78Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007991RNA polymerase I specific transcription initiation factor RRN3PFAMPF05327RRN3coord: 11..162
e-value: 7.6E-17
score: 61.1
IPR007991RNA polymerase I specific transcription initiation factor RRN3PANTHERPTHR12790TRANSCRIPTION INITIATION FACTOR IA RRN3coord: 3..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig765contigEcto-sp13_S_contig765:19551..21135 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig765.18870.1mRNA_Ecto-sp13_S_contig765.18870.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig765 19551..21135 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig765.18870.1 ID=prot_Ecto-sp13_S_contig765.18870.1|Name=mRNA_Ecto-sp13_S_contig765.18870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
DDPATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFS
GLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDP
AALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYAL
HALRVVQYAPLIE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007991RNA_pol_I_trans_ini_fac_RRN3