mRNA_Ecto-sp13_S_contig765.18870.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig765.18870.1
Unique NamemRNA_Ecto-sp13_S_contig765.18870.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: A0A6H5JAN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAN6_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 3.930e-97
Identity = 152/163 (93.25%), Postives = 152/163 (93.25%), Query Frame = 1 
Query:    1 DDPATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 489
            DDP TLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE          GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE
Sbjct:   64 DDPETLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE----------GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 216
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BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: D7FL61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL61_ECTSI)

HSP 1 Score: 300 bits (769), Expect = 2.710e-94
Identity = 152/163 (93.25%), Postives = 152/163 (93.25%), Query Frame = 1 
Query:    1 DDPATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 489
            DDP TLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE          GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE
Sbjct:   21 DDPETLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCE----------GNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAPLIE 173
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BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: A0A482RWK0_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWK0_9ARCH)

HSP 1 Score: 61.2 bits (147), Expect = 1.210e-8
Identity = 36/136 (26.47%), Postives = 65/136 (47.79%), Query Frame = 1 
Query:   73 DEFKELVDALFRFDWRGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDPAALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYALHALRVVQYAP 480
            D+F+EL+ ALF FD++   +I ++   LL H VS N+  +  A+ + V         L  +    I    +G +D         +H  ++    L P+  + L  +L + +PH+RL    ++DY    LR+++  P
Sbjct:   23 DKFRELLIALFHFDFKSEHRINKALCELLVHFVSVNALHLPNALELFVNRFRSIRATLSSDNPSQID---KGFLD--------TIHETIRRLCILTPTAPTLLLSILYKEFPHKRLDPATITDYVAQVLRLLEARP 147
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BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Match: A0A6A3TZ42_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TZ42_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.470e-6
Identity = 25/74 (33.78%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   10 ATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDW--RGSDKIVQSFSGLLQHLVSANSTCMVPAMHMLVRNL 225
            AT  +++  L +C++ ++++P  ++ L+D LF+ D    G    V+ ++  + HLVS+N+  ++PA+HMLVRN+
Sbjct:   50 ATRRKIFRALPRCISTMAREPRAYRALLDVLFKCDLLASGDPLEVEDYTSFIVHLVSSNTVYVLPALHMLVRNM 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig765.18870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JAN6_9PHAE3.930e-9793.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL61_ECTSI2.710e-9493.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482RWK0_9ARCH1.210e-826.47Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A6A3TZ42_9STRA3.470e-633.78Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig765contigEcto-sp13_S_contig765:19551..21135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score302.4
Seed ortholog evalue1.3e-79
Seed eggNOG ortholog2880.D7FL61
Preferred nameRRN3
Model size489
KEGG koko:K15216
Hectar predicted targeting categoryother localisation
GOsGO:0000120,GO:0000182,GO:0000976,GO:0001013,GO:0001042,GO:0001046,GO:0001047,GO:0001067,GO:0001163,GO:0001164,GO:0001167,GO:0001169,GO:0001179,GO:0001181,GO:0001188,GO:0001701,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006356,GO:0006360,GO:0006361,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007028,GO:0007275,GO:0007399,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009303,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019827,GO:0019899,GO:0022008,GO:0022607,GO:0022613,GO:0023051,GO:0023057,GO:0030154,GO:0030718,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036099,GO:0042254,GO:0042592,GO:0042790,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043565,GO:0043933,GO:0044085,GO:0044087,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045893,GO:0045935,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051252,GO:0051254,GO:0051960,GO:0051962,GO:0060255,GO:0060284,GO:0060548,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0098781,GO:0120035,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901797,GO:1902253,GO:1902254,GO:1902531,GO:1902532,GO:1902680,GO:1903506,GO:1903508,GO:1990837,GO:2000026,GO:2000112,GO:2000142,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Exons3
EggNOG free text desc.rna polymerase i-specific transcription initiation factor
EggNOG OGsKOG2434@1,KOG2434@2759
Cds size489
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464035.1276395-CDS-Ecto-sp13_S_contig765:19550..196181681464035.1276395-CDS-Ecto-sp13_S_contig765:19550..19618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig765 19551..19618 +
1681464035.1395304-CDS-Ecto-sp13_S_contig765:20269..204811681464035.1395304-CDS-Ecto-sp13_S_contig765:20269..20481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig765 20270..20481 +
1681464035.1507146-CDS-Ecto-sp13_S_contig765:20926..211351681464035.1507146-CDS-Ecto-sp13_S_contig765:20926..21135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig765 20927..21135 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig765.18870.1prot_Ecto-sp13_S_contig765.18870.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig765 19551..21135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig765.18870.1

>prot_Ecto-sp13_S_contig765.18870.1 ID=prot_Ecto-sp13_S_contig765.18870.1|Name=mRNA_Ecto-sp13_S_contig765.18870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
DDPATLWRLYLGLSQCVTIISQQPDEFKELVDALFRFDWRGSDKIVQSFS
GLLQHLVSANSTCMVPAMHMLVRNLVLTPRDLDCETDQSIPNHREGNVDP
AALTRQHNVHAALQASLTLVPSGRSKLFGVLKQNYPHRRLRAEVLSDYAL
HALRVVQYAPLIE
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mRNA from alignment at Ecto-sp13_S_contig765:19551..21135+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig765.18870.1 ID=mRNA_Ecto-sp13_S_contig765.18870.1|Name=mRNA_Ecto-sp13_S_contig765.18870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig765:19551..21135+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGACCCGGCGACGCTATGGCGCCTCTACCTCGGACTCTCCCAGTGCGT
CACCATCATCTCGCAGCAGTGAGTTTCATTTCAACCCCCCGCATGTTTTC
ATGCTGTAATTGTGTTTGCTGCACAGGCGGCAGTGCTCTCGTTTTGCGAG
TCTCTACAGTGGCACATAAGCACACAAGCGCTTCCGTCACAGCAATGGTT
TTGGTGTTTTGGGAGTCTACATGTATGTTATGCACATGAGCGTTTCTATA
GCGATGACACCGCAATGCTCTTTGCAGCAGTGTCCTGTTTGAGGTAACTG
CTGATCCCTCAAGAGCTCGGATTGTTGTGGCGTTGTCTTCCGGTCACATT
CTCTGCTCATCACCTCCTATGACAAGGCGTCCTCGTGTGCCCCCCCCTTG
GTATCCTCTCTCCGCCTGCTTTGTCTGCGGGAATAGAAAAATAGTTGGTT
CCGTTGACTTTGATTCATCTTGGCTGGAAAAAGAGGAGACACAAGCTAGT
ATCTACAATAATTTTGTTGGACCGCCTACGCAGGAGTTTCAGAGTATTTC
AAAAAATAACGGGGAGAGGGCACGCAGACCCTACCCTTAACCCTACCATA
ACCCCGAAACACGGATTGAATACCTTTTCCCAAATCTTGGCGTTATCAAG
TTTGCTTCGTAGACTACTGTTTTTTTTTGTAACCTTGTGTTTCGCGTTTG
TTGATTTGTTTCTGCTTAGACCCGACGAGTTCAAGGAGCTGGTCGATGCC
CTCTTCCGGTTCGACTGGCGAGGAAGCGACAAGATCGTGCAGTCCTTCAG
CGGCCTTCTGCAACACCTCGTGTCGGCCAACTCCACCTGCATGGTGCCCG
CCATGCACATGCTCGTCAGGAATCTCGTCCTCACCCCCCGGGATCTTGAC
TGTGAGACAGACCAATCCATCCCCAATCATCGTTTCGACGAAACATATTA
AACAAATAGTACGTATTGGGCTTGTATGTACATTGGATATGTGTATCGGG
TTCTTCTGTTGTCTATGTTGTTTTTTTCTGGGGTTCTTGAAGAACAATTA
ACACTTTTTCATTCCGGGGCGCCGGGCGCCGATTCGTATGGCGGATAGTG
TACTGCACCTACGTGAGGTGGCCTTGACTTACGACCCTGCCATGTGTCGT
TGTGTTTGTCACGCACGACCCCGTAAACCGCAAATTTCTTCACGATCTGA
CATTCGCGCTTGCAAGCACCAAATGCCGCCCTGTTCGCTTGAGTGTAGCT
AGCTGTTGACCTTGGCAATCAAGCACGGTACAGCTCGAACAGAGGAGATC
CTGTTGACTCCCAGGGCCTCAGATCGCCGCGGTTGGTGCTAATGGCATTG
CAATGCTATGATTCTGCCCTCCACAGGTGAAGGAAACGTGGATCCGGCGG
CGCTAACTCGGCAGCATAACGTGCACGCGGCGCTTCAGGCCAGCCTTACC
CTCGTCCCCAGCGGCCGGTCCAAGCTGTTCGGCGTGCTCAAGCAGAACTA
CCCGCACCGCAGACTAAGGGCGGAGGTTTTGTCCGACTACGCTCTGCATG
CACTCCGGGTTGTGCAGTACGCTCCGCTCATTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig765:19551..21135+

>mRNA_Ecto-sp13_S_contig765.18870.1 ID=mRNA_Ecto-sp13_S_contig765.18870.1|Name=mRNA_Ecto-sp13_S_contig765.18870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig765:19551..21135+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGACCCGGCGACGCTATGGCGCCTCTACCTCGGACTCTCCCAGTGCGT
CACCATCATCTCGCAGCAACCCGACGAGTTCAAGGAGCTGGTCGATGCCC
TCTTCCGGTTCGACTGGCGAGGAAGCGACAAGATCGTGCAGTCCTTCAGC
GGCCTTCTGCAACACCTCGTGTCGGCCAACTCCACCTGCATGGTGCCCGC
CATGCACATGCTCGTCAGGAATCTCGTCCTCACCCCCCGGGATCTTGACT
GTGAGACAGACCAATCCATCCCCAATCATCGTGAAGGAAACGTGGATCCG
GCGGCGCTAACTCGGCAGCATAACGTGCACGCGGCGCTTCAGGCCAGCCT
TACCCTCGTCCCCAGCGGCCGGTCCAAGCTGTTCGGCGTGCTCAAGCAGA
ACTACCCGCACCGCAGACTAAGGGCGGAGGTTTTGTCCGACTACGCTCTG
CATGCACTCCGGGTTGTGCAGTACGCTCCGCTCATTGAG
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