mRNA_Ecto-sp13_S_contig7614.18822.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7614.18822.1
Unique NamemRNA_Ecto-sp13_S_contig7614.18822.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7614.18822.1 vs. uniprot
Match: D7FP53_ECTSI (Cellulose synthase (UDP-forming), family GT2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP53_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 1.000e-137
Identity = 312/409 (76.28%), Postives = 320/409 (78.24%), Query Frame = 1 
Query:    1 MAERKTQDQANRRVVPLGSDGEAAEARTTSGRRSSDKLRIRSHSLGRDRQARRRVTPLGEDESEEARERGVPVPAVGLPPEEPPYXXXXXXXXXXXXXXXXXXXXXXGAAGANIHGQQESPVTFTRNAFVAEQLEHLARAVSSIPSSPAVGQEAGWWADRTPGAGGNNN-------PHMGSATPVFLLQSPASHLYRQLRSTPSTASNTEASGSSSRPLSHSGGAXXXXXXXXXXXXXXXXXXXXXTPPRLGSAPTSGGILQSPRGERGAGAAAPTALAAGSAAGXXXXXXPGVRXXXXXXXXXXXXGAEREASWSQGSTIQEYLVAQLQQLSQLLDSPPPRREVGPQTGATLPEVAVAVAPEEERRRSGKRSLERAGSGGSSLQYSLSAASSRSGSPFSLDGTTAAMA 1206
            MAERKTQDQANRRVVPLGSDGE AEAR T+GRR+SDKLRI+SHSLGR+RQARRRVTPLGEDESEEARERGVPVPAVGLP EEPP+  XXXXXXXXXXXXXXXXXXXX    A+  GQQESP TFTRNAFVAEQL+HLARAVSSIPSSPAVGQEAGWW DR                PH GSA PVFLLQSPASHLYRQLRSTPSTASNTEASGSSSRPLSHSG  XXXXXXXXXXXXXXXXXXXXX                                       XXXX  PGVR            GAEREA WSQGST+QEYLVAQLQQLSQLLDSPPPRRE GPQTGATLPEVAVAVAPEEERRRS KRSLERAGSGGSSLQYSLSAASSRSGSPFSLDGTTAAMA
Sbjct:    1 MAERKTQDQANRRVVPLGSDGEVAEARATTGRRNSDKLRIKSHSLGRERQARRRVTPLGEDESEEARERGVPVPAVGLPREEPPHPGXXXXXXXXXXXXXXXXXXXXXXXXASTSGQQESPATFTRNAFVAEQLKHLARAVSSIPSSPAVGQEAGWWGDRXXXXXXXXXXXXXXXXPHTGSAPPVFLLQSPASHLYRQLRSTPSTASNTEASGSSSRPLSHSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGVRAAPSPAGPPGVGGAEREAFWSQGSTVQEYLVAQLQQLSQLLDSPPPRREAGPQTGATLPEVAVAVAPEEERRRSVKRSLERAGSGGSSLQYSLSAASSRSGSPFSLDGTTAAMA 409
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BLAST of mRNA_Ecto-sp13_S_contig7614.18822.1 vs. uniprot
Match: A0A6H5KYP8_9PHAE (GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP8_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 2.200e-103
Identity = 224/295 (75.93%), Postives = 231/295 (78.31%), Query Frame = 1 
Query:  322 GAAGANIHGQQESPVTFTRNAFVAEQLEHLARAVSSIPSSPAVGQEAGWWADRTPGAGGNNNPHMGSATPVFLLQSPASHLYRQLRSTPSTASNTEASGSSSRPLSHSGGAXXXXXXXXXXXXXXXXXXXXXTPPRLGSAPTSGGILQSPRGERGAGAAAPTALAAGSAAGXXXXXXPGVRXXXXXXXXXXXXGAEREASWSQGSTIQEYLVAQLQQLSQLLDSPPPRREVGPQTGATLPEVAVAVAPEEERRRSGKRSLERAGSGGSSLQYSLSAASSRSGSPFSLDGTTAAMA 1206
            GAAGA+IHGQQESPVTFTRNAFVAEQL+HLARAVSSIPSSPAVGQE GWW DRT G GG+NNPHMGSA PVFLLQSPASHLYRQLRSTPSTASNTEASGSSSRPLSHSG  XXXXXXXXXXXXXXXXXXXXX                                       XXX   PGV             GAEREASWSQGST+QEYLVAQLQQLSQLLDSPPPRRE GP+TG+TLPE+AVAVAPEEERRRSGKRSLERAGSGGSSLQYSLS ASSRSGSPFSLDGTTAAMA
Sbjct:   64 GAAGADIHGQQESPVTFTRNAFVAEQLKHLARAVSSIPSSPAVGQEVGWWGDRTAGGGGDNNPHMGSAPPVFLLQSPASHLYRQLRSTPSTASNTEASGSSSRPLSHSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGPGVHAAPSPAGPPGIGGAEREASWSQGSTVQEYLVAQLQQLSQLLDSPPPRREAGPKTGSTLPELAVAVAPEEERRRSGKRSLERAGSGGSSLQYSLSTASSRSGSPFSLDGTTAAMA 358
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7614.18822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP53_ECTSI1.000e-13776.28Cellulose synthase (UDP-forming), family GT2 n=1 T... [more]
A0A6H5KYP8_9PHAE2.200e-10375.93GT2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7614contigEcto-sp13_S_contig7614:2..3804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score440.7
Seed ortholog evalue7.6e-121
Seed eggNOG ortholog2880.D7FP53
Model size1206
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Glycosyl transferase family 21
EggNOG OGs2C0MJ@1,2S2MV@2759
Cds size1206
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464031.0579221-CDS-Ecto-sp13_S_contig7614:1..9431681464031.0579221-CDS-Ecto-sp13_S_contig7614:1..943Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7614 2..943 -
1681464031.0708363-CDS-Ecto-sp13_S_contig7614:3540..38041681464031.0708363-CDS-Ecto-sp13_S_contig7614:3540..3804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7614 3541..3804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7614.18822.1prot_Ecto-sp13_S_contig7614.18822.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7614 2..3804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7614.18822.1

>prot_Ecto-sp13_S_contig7614.18822.1 ID=prot_Ecto-sp13_S_contig7614.18822.1|Name=mRNA_Ecto-sp13_S_contig7614.18822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=402bp
MAERKTQDQANRRVVPLGSDGEAAEARTTSGRRSSDKLRIRSHSLGRDRQ
ARRRVTPLGEDESEEARERGVPVPAVGLPPEEPPYPGQPGSNGGGSGGGV
GGVDSGDGAAGANIHGQQESPVTFTRNAFVAEQLEHLARAVSSIPSSPAV
GQEAGWWADRTPGAGGNNNPHMGSATPVFLLQSPASHLYRQLRSTPSTAS
NTEASGSSSRPLSHSGGAASPNERAAAAAAAAVTLDATTTPPRLGSAPTS
GGILQSPRGERGAGAAAPTALAAGSAAGGGGAGGPGVRAAPSPAGPSGVG
GAEREASWSQGSTIQEYLVAQLQQLSQLLDSPPPRREVGPQTGATLPEVA
VAVAPEEERRRSGKRSLERAGSGGSSLQYSLSAASSRSGSPFSLDGTTAA
MA
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mRNA from alignment at Ecto-sp13_S_contig7614:2..3804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7614.18822.1 ID=mRNA_Ecto-sp13_S_contig7614.18822.1|Name=mRNA_Ecto-sp13_S_contig7614.18822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3803bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7614:2..3804- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGAGCGGAAGACCCAGGATCAAGCTAACCGGCGCGTGGTGCCGCT
CGGCAGTGACGGCGAGGCAGCGGAGGCAAGGACAACTAGCGGCCGCCGCA
GCAGCGACAAGCTCCGCATCAGATCGCACAGCCTTGGTCGGGACAGGCAG
GCAAGGCGCCGTGTAACGCCGCTCGGGGAAGACGAGTCCGAGGAAGCTCG
AGAAAGGGGGGTGCCGGTCCCCGCGGTAGGACTCCCACCCGAGGAACCCC
CCTATCCCGGACAGGTGAGTGCGGTGCAGAGGTTATTTTTAGACATAACT
GAAATCCATCACCATGGCCGAGGATGCGGCAAAACTTCCTCCTTCTCGAG
TTGCTTGTTTCACGCATTTGCCCTGTGGTGGTTTGATGGACCTTGTGCAT
GTTGCTCAACACGGGTGGAGTCCGCACATTTTTTAAACTTGCGACTGCTG
CTGCTGAATAGACTTACAACAATAGACCTTGCCGTATTTGCTGTCCTACA
ATGCACACAGCACAGCAATATGCTATGAACATGTCAGTCAGTATGGAGTG
TCTCTCAAGTTCTCTCTCACACGTTGTCACATCTTTCTCAACCGCCCACG
ACCACTGTTCCCATTCGCCGGCCGTGCGGGTGTGTGTCCTACACCCAAGC
ACATGCTTTGCGGGTTTACGGGGACCCAGCATGAGCTTTGGATCCGAACA
GCGATCCAAACGCGAACGAAGAAATCATTGGGGATAACACATACCTTAGC
GGTCGTCGTGGCGGACATGATAAATCGATAAATGAGTAATCTTGGTACAG
ATTTTCGGGCAGTATGAAGCCGCAGTGTGAACGAACAGGTGCTGTATTCA
TGTTGTAGATGAAAAGATGAAAATCTGACCGACATCCGGGGTACGCTTTG
CTGCTCATGTGAGTGTTGTCATGAAACACACTGCGCGGAACATCCATGAC
CGTGGCTGGCCGGCCCTCTCTCAGCATCCGAGTATCAGAAACCGTCCCGT
AGTTCCAGGTAACGACAGAACGCAGCCGAGAATCGCCTCGGCCAGAGCAT
CCAGCTCCGGTTTCGACATACTCCGAACTCCGAACTGCTGGTGGTGTGAA
AGAACGAATTTCGACAAATATGGCGGGCGGGGAGGAGGTTTGTCCGCCTG
CCGAAGAAAATATCTGTCACGGGACGCATATCGAGGACAGCAGGAGCATT
AGACTGTAGAATTCTTGGCCAACCGAGGGTCCCATTCGTGTCACCCATGG
ATCACGAGGGAGAGGTCAGTCTGGATTTTTCACACCACCGGTGGGGGTAG
AGTGTGCAACACCTAGAGTCAAAATCGAAGAAGGCACCCAAAGCACAAAG
AGATCGGCGGAACAAACTCGAGGAAGAGATCTACGCTCCGATCTACGAGC
AGTTACTTGCTACCTGCGCCCGATGCTGAATAGCCAAGAGAAGGGAACTC
TGTTGGTAGATGGAGCGCAAAGCGTTGCCATGTAGATAATGGTAGAGCGT
CCAAACCGTGTCCATCTATGGATCTAGCCCGGGGCGCCCCAAAACGAAGA
ACGAAAATAGATGTTTGCAGGAGTTCCGTACGGGGGTCTTCGGGAACGGG
TAGATTTCTGCGTGTGTTCATTTTTCCTTAACATGGAACAACACGCGGTT
GCGAGGAGTCCGGCAACTTGAGTCCGGAGGTTTCCCCACACAGGGTGCGA
GTCACGCGATGGACAAATTGGTGCCTGATTTTTAATTTTCACCGCCCGCT
GTTCGACCGCACAACCAGTGCATCCGTTTGGTGGAGTATGCATTTTGGAA
AAAAAAAACGGTTCACGGGAGGGTTTCGAAACCCCGTACAGTGACCGTTC
TCAACAACCTGGGACGGCATTGCATTTGAAAGGGGGGCTTTCTCAGCGGG
TTATTACATTCACGGATTGGCCTTCATTGGCCGGTTAACAATGAATAGCG
CCTTGCAACGAAATATTTATGTTTTTTGTTTTTTCCGGGGACCATCTCTA
CTGCTGTGACACTGTTGTACGACGATATACCGTGTGCGTGAAGAATTGCA
ATACACTACCCCCAACACCGGCCGCGCACCGACGGGGTAGTTGAAAAACG
CCTCCACGATGTATGCCACAAAGCCGCAAAACAGACCTAGTTTTGAGAGA
TTCCAGAGGCGTTTCCTTGTTCGATTACCGTTGAACCAGCGCTGAATATC
CCGTTGTTTTGTTTTATGCACGCCTCCTGTAGTCGCCGGCTATCGGTTGT
TCTTTGTCCCGTTCGGTGTTTATCTCTAGCCAACTCAGGCGACAATACGG
TGGCAATCAAGCACTCCTACAGTGGCACGGGCGCTCACGGGCGGACCGAA
TTTTACTAATTTGGTCCCTAACCCACGATACAAAAGTGTTCTAGCTAAAT
AGTTAAATGAACTGTGCTGTCAGCCCTGTGGTCCGGGTGTCACTTTGCGA
TATTTTGATCAGGAACAAGACGAAAGGCGAAAGGGCTGCGGAGAACCGGG
GCGTCGTGATGTGTTTGTTGCGCGTGCGTTGTACAATTTTCACGCTGAGC
AGCTTTGCCGGAGCGTGTACAGGTAACTCAAGTGTACGAACTCGAACATG
TAATTTTTGTGAACCTGTGAAGAACCCCGGCACACGAACCCATACTACCG
TTGTCACTGTGAAGCCCACGTGGGTGTATACACCATTAGTGGCGAACGTT
CAGGTTGAAGGTCCACCTGCCTCTTATAACACGCTGCTTGTGCTTGCTTT
TCTACCCTTCTCTTTCTCAGTAGTGACTTGAAGCTCTCGACGACATCGTG
TTGTTTCGAAACCTGCCGTAACCCGTCCTCTTTCGTCTGCCAACCCCCTT
CTTCGGTGCAGCCCGGCAGCAATGGCGGCGGCAGCGGTGGGGGTGTTGGC
GGTGTAGATAGCGGCGATGGCGCTGCCGGCGCCAACATCCACGGGCAGCA
AGAGTCGCCGGTGACGTTCACGAGGAACGCCTTCGTGGCCGAGCAGCTCG
AGCACCTTGCGAGGGCCGTCAGCAGCATCCCGTCGTCCCCTGCGGTGGGA
CAGGAAGCGGGGTGGTGGGCAGACAGAACACCCGGGGCAGGAGGAAACAA
CAACCCGCACATGGGCAGCGCGACACCCGTGTTCTTGCTTCAGTCCCCCG
CCTCGCACCTCTATCGACAGCTTCGATCGACGCCATCCACAGCGAGCAAC
ACCGAGGCTTCTGGGAGCTCCTCTCGGCCCTTGTCTCACTCTGGAGGCGC
TGCTTCGCCCAACGAGAGAGCTGCCGCCGCTGCCGCCGCGGCAGTCACTT
TGGATGCAACCACCACGCCCCCTCGCCTTGGTTCAGCGCCAACGTCGGGG
GGGATCTTGCAGTCGCCCAGGGGAGAACGGGGCGCCGGGGCGGCGGCACC
GACCGCTTTGGCGGCTGGTTCGGCCGCAGGAGGCGGCGGCGCCGGTGGCC
CTGGAGTCCGCGCCGCTCCTTCGCCCGCTGGCCCTTCCGGCGTCGGCGGT
GCTGAGCGCGAGGCGTCCTGGTCTCAGGGATCGACGATCCAGGAGTACCT
CGTCGCCCAGCTGCAGCAGCTGTCGCAGCTGCTGGACTCGCCGCCGCCGC
GTCGGGAGGTGGGGCCGCAGACCGGCGCGACGCTTCCAGAGGTGGCGGTG
GCCGTGGCACCCGAAGAAGAACGGCGTAGGAGCGGAAAAAGGAGCCTGGA
GAGGGCGGGCAGCGGCGGGAGTTCCCTGCAATACTCGCTGTCGGCCGCGT
CCTCGAGGTCCGGTAGCCCCTTCTCGCTCGACGGAACGACGGCAGCTATG
GCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7614:2..3804-

>mRNA_Ecto-sp13_S_contig7614.18822.1 ID=mRNA_Ecto-sp13_S_contig7614.18822.1|Name=mRNA_Ecto-sp13_S_contig7614.18822.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7614:2..3804- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGAGCGGAAGACCCAGGATCAAGCTAACCGGCGCGTGGTGCCGCT
CGGCAGTGACGGCGAGGCAGCGGAGGCAAGGACAACTAGCGGCCGCCGCA
GCAGCGACAAGCTCCGCATCAGATCGCACAGCCTTGGTCGGGACAGGCAG
GCAAGGCGCCGTGTAACGCCGCTCGGGGAAGACGAGTCCGAGGAAGCTCG
AGAAAGGGGGGTGCCGGTCCCCGCGGTAGGACTCCCACCCGAGGAACCCC
CCTATCCCGGACAGCCCGGCAGCAATGGCGGCGGCAGCGGTGGGGGTGTT
GGCGGTGTAGATAGCGGCGATGGCGCTGCCGGCGCCAACATCCACGGGCA
GCAAGAGTCGCCGGTGACGTTCACGAGGAACGCCTTCGTGGCCGAGCAGC
TCGAGCACCTTGCGAGGGCCGTCAGCAGCATCCCGTCGTCCCCTGCGGTG
GGACAGGAAGCGGGGTGGTGGGCAGACAGAACACCCGGGGCAGGAGGAAA
CAACAACCCGCACATGGGCAGCGCGACACCCGTGTTCTTGCTTCAGTCCC
CCGCCTCGCACCTCTATCGACAGCTTCGATCGACGCCATCCACAGCGAGC
AACACCGAGGCTTCTGGGAGCTCCTCTCGGCCCTTGTCTCACTCTGGAGG
CGCTGCTTCGCCCAACGAGAGAGCTGCCGCCGCTGCCGCCGCGGCAGTCA
CTTTGGATGCAACCACCACGCCCCCTCGCCTTGGTTCAGCGCCAACGTCG
GGGGGGATCTTGCAGTCGCCCAGGGGAGAACGGGGCGCCGGGGCGGCGGC
ACCGACCGCTTTGGCGGCTGGTTCGGCCGCAGGAGGCGGCGGCGCCGGTG
GCCCTGGAGTCCGCGCCGCTCCTTCGCCCGCTGGCCCTTCCGGCGTCGGC
GGTGCTGAGCGCGAGGCGTCCTGGTCTCAGGGATCGACGATCCAGGAGTA
CCTCGTCGCCCAGCTGCAGCAGCTGTCGCAGCTGCTGGACTCGCCGCCGC
CGCGTCGGGAGGTGGGGCCGCAGACCGGCGCGACGCTTCCAGAGGTGGCG
GTGGCCGTGGCACCCGAAGAAGAACGGCGTAGGAGCGGAAAAAGGAGCCT
GGAGAGGGCGGGCAGCGGCGGGAGTTCCCTGCAATACTCGCTGTCGGCCG
CGTCCTCGAGGTCCGGTAGCCCCTTCTCGCTCGACGGAACGACGGCAGCT
ATGGCT
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