mRNA_Ecto-sp13_S_contig7573.18774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE) HSP 1 Score: 171 bits (434), Expect = 7.140e-47 Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 3
Query: 174 EAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV---------QGGDDDEREVITEEPRSYSKRTQK 443
E +RWKEAD+IQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQ +GGDDDEREVITEEPRSYSKRTQK
Sbjct: 716 EIYKRWKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGGDDDEREVITEEPRSYSKRTQK 814
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: D7FNK8_ECTSI (PRORP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK8_ECTSI) HSP 1 Score: 154 bits (389), Expect = 6.750e-46 Identity = 76/89 (85.39%), Postives = 78/89 (87.64%), Query Frame = 3
Query: 204 IIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV---------QGGDDDEREVITEEPRSYSKRTQK 443
+IQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQ +GGDDD REVITEEPRSYSKRTQK
Sbjct: 1 MIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGGDDDAREVITEEPRSYSKRTQK 89
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A835YSR3_9STRA (Ribonuclease P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR3_9STRA) HSP 1 Score: 112 bits (280), Expect = 1.800e-29 Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 3
Query: 222 PKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQG--GD--DDEREVITEEPRSYSKRTQK 443
PKNNDDWYWL+AAV GG VLV+TNDEMRDHHF MLSHRSFQRWKERHQV GD D R+V+ EPR YSKR Q+
Sbjct: 2 PKNNDDWYWLWAAVRVGGRVLVVTNDEMRDHHFLMLSHRSFQRWKERHQVHFCFGDWRDGRRQVLVREPRKYSKRIQR 79
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A2D4BKK1_PYTIN (Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK1_PYTIN) HSP 1 Score: 111 bits (277), Expect = 1.220e-25 Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 3
Query: 189 WKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQK 443
WKE +I+ +C NNDDWYWLYAAV GG LV+TNDEMRDHHF M+ +RSF RWKERHQV +E+ V +EPR YS R Q+
Sbjct: 501 WKERNIMYNCRSGNNDDWYWLYAAVKLGGRTLVVTNDEMRDHHFQMIHNRSFGRWKERHQVHYSIHNEKHVKVQEPRVYSARPQR 585
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A067BCH7_SAPPC (Ribonuclease P n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BCH7_SAPPC) HSP 1 Score: 99.4 bits (246), Expect = 2.990e-24 Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 3
Query: 189 WKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQ 440
WK+ ++ +C P NNDDWYWLYAAV GG LV++NDEMRDHHFSM+++ FQRWKERH V D + +EP YSKR+Q
Sbjct: 5 WKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVHY-DKVSGKFSFDEPSVYSKRSQ 87
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA) HSP 1 Score: 106 bits (264), Expect = 7.400e-24 Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 3
Query: 186 RWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV-----QGGDDDEREVITEEPRSYSKRTQ 440
RW+E ++ + +NDDWYWLYAA++ GGSV ++TNDEMRDHHF MLSHR FQRWKERHQV + G REV+T P +YS R Q
Sbjct: 477 RWREQKVMYNTPVGSNDDWYWLYAALWLGGSVQLVTNDEMRDHHFQMLSHRDFQRWKERHQVHFEFSREGIRGHREVVTYAPPAYSVRMQ 566
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A1V9ZIW2_9STRA (Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIW2_9STRA) HSP 1 Score: 103 bits (256), Expect = 5.490e-23 Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 3
Query: 132 RRT*SRRRRYSLLPEAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQ 440
RRT R+ L P Q W++ ++ +C P NNDDWYWLYAAV GG LV++NDEMRDHHF M+ + F RWKERH V D D I +EPR YSKR+Q
Sbjct: 345 RRTSDRQVPEDLRPLVQA-WRDDGVMYNCLPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNVDFHRWKERHLVHY-DKDAGRFIFDEPRVYSKRSQ 445
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A8K1CJM4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJM4_PYTOL) HSP 1 Score: 102 bits (254), Expect = 1.210e-22 Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 3
Query: 174 EAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQK 443
E + W E +++ +C NNDDWYWLYAAV GG L++TNDEMRDHHF M+ +RSF RWKERHQV E +V EP YS R Q+
Sbjct: 381 ETLKTWLEQNVMYNCRSGNNDDWYWLYAAVKLGGRTLMVTNDEMRDHHFQMIHNRSFTRWKERHQVHYSIHWETQVKVNEPSVYSVRPQR 470
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A067CVR5_SAPPC (Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVR5_SAPPC) HSP 1 Score: 100 bits (249), Expect = 5.060e-22 Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 3
Query: 132 RRT*SRRRRYSLLPEAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQ 440
RRT R L P Q WK+ ++ +C P NNDDWYWLYAAV GG LV++NDEMRDHHFSM+++ FQRWKERH V D + +EP YSKR+Q
Sbjct: 341 RRTKDREVPDELRPMVQS-WKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVHY-DKVNGKFTFDEPSVYSKRSQ 441
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A6G0XMB3_9STRA (Ribonuclease P n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMB3_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.880e-21 Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 3
Query: 150 RRRYSLLPEAQR----RWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERH----QVQGGDDDEREVITEEPRSYSKRTQ 440
R R +PE R +WK+ I+ +C P NNDDWYWLYAAV GG LV++NDEMRDHHF M+ ++ F RWKERH +V+GG + + EP YSKR+Q
Sbjct: 349 RTRDEQVPEHHRAMVQQWKDDGIMFNCLPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNKDFVRWKERHLVHYKVRGG----QLLELSEPSVYSKRSQ 449 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7573.18774.1 >prot_Ecto-sp13_S_contig7573.18774.1 ID=prot_Ecto-sp13_S_contig7573.18774.1|Name=mRNA_Ecto-sp13_S_contig7573.18774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp MRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQKback to top mRNA from alignment at Ecto-sp13_S_contig7573:1..1607- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7573.18774.1 ID=mRNA_Ecto-sp13_S_contig7573.18774.1|Name=mRNA_Ecto-sp13_S_contig7573.18774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7573:1..1607- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7573:1..1607- >mRNA_Ecto-sp13_S_contig7573.18774.1 ID=mRNA_Ecto-sp13_S_contig7573.18774.1|Name=mRNA_Ecto-sp13_S_contig7573.18774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7573:1..1607- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |