mRNA_Ecto-sp13_S_contig7573.18774.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7573.18774.1
Unique NamemRNA_Ecto-sp13_S_contig7573.18774.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 7.140e-47
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 3
Query:  174 EAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV---------QGGDDDEREVITEEPRSYSKRTQK 443
            E  +RWKEAD+IQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQ          +GGDDDEREVITEEPRSYSKRTQK
Sbjct:  716 EIYKRWKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGGDDDEREVITEEPRSYSKRTQK 814          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: D7FNK8_ECTSI (PRORP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK8_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 6.750e-46
Identity = 76/89 (85.39%), Postives = 78/89 (87.64%), Query Frame = 3
Query:  204 IIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV---------QGGDDDEREVITEEPRSYSKRTQK 443
            +IQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQ          +GGDDD REVITEEPRSYSKRTQK
Sbjct:    1 MIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGGDDDAREVITEEPRSYSKRTQK 89          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A835YSR3_9STRA (Ribonuclease P n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.800e-29
Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  222 PKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQG--GD--DDEREVITEEPRSYSKRTQK 443
            PKNNDDWYWL+AAV  GG VLV+TNDEMRDHHF MLSHRSFQRWKERHQV    GD  D  R+V+  EPR YSKR Q+
Sbjct:    2 PKNNDDWYWLWAAVRVGGRVLVVTNDEMRDHHFLMLSHRSFQRWKERHQVHFCFGDWRDGRRQVLVREPRKYSKRIQR 79          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A2D4BKK1_PYTIN (Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKK1_PYTIN)

HSP 1 Score: 111 bits (277), Expect = 1.220e-25
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = 3
Query:  189 WKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQK 443
            WKE +I+ +C   NNDDWYWLYAAV  GG  LV+TNDEMRDHHF M+ +RSF RWKERHQV     +E+ V  +EPR YS R Q+
Sbjct:  501 WKERNIMYNCRSGNNDDWYWLYAAVKLGGRTLVVTNDEMRDHHFQMIHNRSFGRWKERHQVHYSIHNEKHVKVQEPRVYSARPQR 585          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A067BCH7_SAPPC (Ribonuclease P n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BCH7_SAPPC)

HSP 1 Score: 99.4 bits (246), Expect = 2.990e-24
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  189 WKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQ 440
            WK+  ++ +C P NNDDWYWLYAAV  GG  LV++NDEMRDHHFSM+++  FQRWKERH V   D    +   +EP  YSKR+Q
Sbjct:    5 WKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVHY-DKVSGKFSFDEPSVYSKRSQ 87          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA)

HSP 1 Score: 106 bits (264), Expect = 7.400e-24
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  186 RWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV-----QGGDDDEREVITEEPRSYSKRTQ 440
            RW+E  ++ +    +NDDWYWLYAA++ GGSV ++TNDEMRDHHF MLSHR FQRWKERHQV     + G    REV+T  P +YS R Q
Sbjct:  477 RWREQKVMYNTPVGSNDDWYWLYAALWLGGSVQLVTNDEMRDHHFQMLSHRDFQRWKERHQVHFEFSREGIRGHREVVTYAPPAYSVRMQ 566          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A1V9ZIW2_9STRA (Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIW2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.490e-23
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  132 RRT*SRRRRYSLLPEAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQ 440
            RRT  R+    L P  Q  W++  ++ +C P NNDDWYWLYAAV  GG  LV++NDEMRDHHF M+ +  F RWKERH V   D D    I +EPR YSKR+Q
Sbjct:  345 RRTSDRQVPEDLRPLVQA-WRDDGVMYNCLPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNVDFHRWKERHLVHY-DKDAGRFIFDEPRVYSKRSQ 445          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A8K1CJM4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJM4_PYTOL)

HSP 1 Score: 102 bits (254), Expect = 1.210e-22
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 3
Query:  174 EAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQK 443
            E  + W E +++ +C   NNDDWYWLYAAV  GG  L++TNDEMRDHHF M+ +RSF RWKERHQV      E +V   EP  YS R Q+
Sbjct:  381 ETLKTWLEQNVMYNCRSGNNDDWYWLYAAVKLGGRTLMVTNDEMRDHHFQMIHNRSFTRWKERHQVHYSIHWETQVKVNEPSVYSVRPQR 470          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A067CVR5_SAPPC (Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVR5_SAPPC)

HSP 1 Score: 100 bits (249), Expect = 5.060e-22
Identity = 55/103 (53.40%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  132 RRT*SRRRRYSLLPEAQRRWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQ 440
            RRT  R     L P  Q  WK+  ++ +C P NNDDWYWLYAAV  GG  LV++NDEMRDHHFSM+++  FQRWKERH V   D    +   +EP  YSKR+Q
Sbjct:  341 RRTKDREVPDELRPMVQS-WKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVHY-DKVNGKFTFDEPSVYSKRSQ 441          
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Match: A0A6G0XMB3_9STRA (Ribonuclease P n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMB3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.880e-21
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 3
Query:  150 RRRYSLLPEAQR----RWKEADIIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERH----QVQGGDDDEREVITEEPRSYSKRTQ 440
            R R   +PE  R    +WK+  I+ +C P NNDDWYWLYAAV  GG  LV++NDEMRDHHF M+ ++ F RWKERH    +V+GG    + +   EP  YSKR+Q
Sbjct:  349 RTRDEQVPEHHRAMVQQWKDDGIMFNCLPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNKDFVRWKERHLVHYKVRGG----QLLELSEPSVYSKRSQ 449          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7573.18774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB75_9PHAE7.140e-4784.85Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FNK8_ECTSI6.750e-4685.39PRORP domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YSR3_9STRA1.800e-2973.08Ribonuclease P n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A2D4BKK1_PYTIN1.220e-2561.18Ribonuclease P n=1 Tax=Pythium insidiosum TaxID=11... [more]
A0A067BCH7_SAPPC2.990e-2457.14Ribonuclease P n=1 Tax=Saprolegnia parasitica (str... [more]
A0A7S2BW17_9STRA7.400e-2457.78Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35... [more]
A0A1V9ZIW2_9STRA5.490e-2353.40Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=12027... [more]
A0A8K1CJM4_PYTOL1.210e-2254.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067CVR5_SAPPC5.060e-2253.40Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepI... [more]
A0A6G0XMB3_9STRA1.880e-2150.48Ribonuclease P n=1 Tax=Aphanomyces euteiches TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7573contigEcto-sp13_S_contig7573:1..1607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size443
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.7189333-CDS-Ecto-sp13_S_contig7573:0..711681464026.7189333-CDS-Ecto-sp13_S_contig7573:0..71Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7573 1..71 -
1681464026.729635-CDS-Ecto-sp13_S_contig7573:949..10191681464026.729635-CDS-Ecto-sp13_S_contig7573:949..1019Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7573 950..1019 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464026.739816-UTR-Ecto-sp13_S_contig7573:1019..11341681464026.739816-UTR-Ecto-sp13_S_contig7573:1019..1134Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7573 1020..1134 -
1681464026.7503953-UTR-Ecto-sp13_S_contig7573:1420..16071681464026.7503953-UTR-Ecto-sp13_S_contig7573:1420..1607Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7573 1421..1607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7573.18774.1prot_Ecto-sp13_S_contig7573.18774.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7573 1..1019 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7573.18774.1

>prot_Ecto-sp13_S_contig7573.18774.1 ID=prot_Ecto-sp13_S_contig7573.18774.1|Name=mRNA_Ecto-sp13_S_contig7573.18774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MRDHHFSMLSHRSFQRWKERHQVQGGDDDEREVITEEPRSYSKRTQK
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mRNA from alignment at Ecto-sp13_S_contig7573:1..1607-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7573.18774.1 ID=mRNA_Ecto-sp13_S_contig7573.18774.1|Name=mRNA_Ecto-sp13_S_contig7573.18774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7573:1..1607- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGAGTTCACCTACCGAGCGCCTGTTGACCAGACAGCGTGTACAACAGT CCACAAAGTCCGGCCACCGACAAGGTGACGGCAAGAACACGCCGTGGCGG ATGTGCATCACCGTGCACGACCCGGACACACCGCCGGACTTGAAGCAGAC GGAGGCGGTATAGCTTGTTGCCAGAAGCTCAAAGAAGGCAGGTTGAGTCA AAGAGCTTGTATCACGAACGAGTGGGTGCAGGGAACGCTTGCGCATGCAC GCACAAGGGGGATCGCCCCCCGCAAACACCTACCACCATGATACACGAGG CCACTTTTCTTGATTTATTTTTCCAATTTTCGGTCTAGATATGCCTGACA GGTGGATAAGAAGTAGCAGTGACCCCACATACCTCCCCCTTTTCTCATCC TTGTTTCTGTGTCCGGGGGCACAACACAAATATCCGCAAACATTTCTATG CACCAACGAACCAACTCGTTAAGGTGGAAGGAGGCGGACATCATCCAGTC TTGCGCGCCGAAGAACAACGACGACTGGTACTGGCTGTACGCGGCAGTGT ACACGGGAGGCTCGGTGCTGGTGCTGACGAACGACGAGATGAGAGACCAC CACTTCTCAATGCTTTCGCACCGCTCATTCCAGAGATGGAAGGAGAGACA CCAGGTACGTCCGTCCGTACGCTGCTGCACGGCATTCGTCTCTTCAACAC CCACCAACACCCACCCCAAGAATCTGATAGTCTCCCGCCAAACGTGCGCT GTGTCAGCATTGCTGTAGGCATCGCAGGAAGTTGCAGTGTCTTGCCTTTC TTGTCTCCCGGCAACAATGTCACTGGAATCGTTGTGACAGTACATGCAAG TTTTTATTATCTAGTCCGCATAGGCGGCAGTTGCCTGCCACAAAGTGTTC TTTTACACTTTTTGTTTTATCAACCTATTCAAAACATGGGGTAGGAGGCG AGGAGGCTCCGAGTGCACCTGTCGCAGGATCGTTGTGCTGTGATGTGGTA TTCTGAGCAACCTCATGTTCCCCTTCTGTGCTGCGCGTCGTTTACTGTTA AGGTAAAACAACAAGCTTGTTTGTCGAAGCGCTCATGACAGAAGTTTTTT GTACATGTTGTCTTATTTTTCCCTCAACGTTGATTTCCTCGATAGTAGGG GTAGAAATCCTTACAGGGCACACGACCAGGGTAGAACAACACGACCCGAA TAGAACACGGATATACCCCGCGGCAAGCTACCGCACGGGCGTATTATTTT AACCGCTCACCTTCGTCGCCGGGGGCATTGACGAAAAAAGTACCTTGCGA TCGGATCACCGAAACGACGGCAATCGTCGTGCTGCATATTATGTGTACTC TACCTGTCAAATGCTCTCGCTGGCGAAAGAGTTTTGTATGAAGTGTACTG ATTTCTTGTTGCTGTGTCTCCGCGATTAATCTCGCTGCTTCATGTGTTGC TCCGCGGGTGTCGACGGCCGGCCGACCTGATGAACCCGACAACCTTTGTA CGCAGGCCCGCTTCTACTTCGGCGACTGGAAGGGAGAGGGCGGCGACGAC GACGAGCGAGAAGTCATCACGGAGGAACCCCGGTCGTACTCCAAGCGGAC GCAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7573:1..1607-

>mRNA_Ecto-sp13_S_contig7573.18774.1 ID=mRNA_Ecto-sp13_S_contig7573.18774.1|Name=mRNA_Ecto-sp13_S_contig7573.18774.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7573:1..1607- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGACCACCACTTCTCAATGCTTTCGCACCGCTCATTCCAGAGATG
GAAGGAGAGACACCAGGTACAGGGCGGCGACGACGACGAGCGAGAAGTCA
TCACGGAGGAACCCCGGTCGTACTCCAAGCGGACGCAGAAG
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