mRNA_Ecto-sp13_S_contig755.18739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig755.18739.1
Unique NamemRNA_Ecto-sp13_S_contig755.18739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 593 bits (1529), Expect = 3.170e-185
Identity = 299/305 (98.03%), Postives = 301/305 (98.69%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTDDEVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPADPSELEKAFDDSKAAGRIANMGLEKLGAMSAGLGDKLNDNADKALNKARALEMGLKVAAAREKEERAKEDAELDAEDGRGRQQEQQQRVVENPYP 1128
            ++EWRGDWGDNSMLWTRRRRARLGLVKND DNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVN ITDLKISLIQTDDEVQPAACFVLREDEATSSTQ ERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPADPSELEKAFDDSKAAGRIANMGLEKLGAMSAGLGDKLNDNADKALNKARALEMGLKVAAAREKEER KEDAELDAEDGRGRQQEQQQRVVENPYP
Sbjct: 3517 HEEWRGDWGDNSMLWTRRRRARLGLVKNDKDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNRITDLKISLIQTDDEVQPAACFVLREDEATSSTQPERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPADPSELEKAFDDSKAAGRIANMGLEKLGAMSAGLGDKLNDNADKALNKARALEMGLKVAAAREKEERVKEDAELDAEDGRGRQQEQQQRVVENPYP 3821          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A7S2CAD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CAD0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 4.860e-48
Identity = 86/202 (42.57%), Postives = 125/202 (61.88%), Query Frame = 1
Query:  241 DNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEM--------REDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTDD------EVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTN 804
            D+S LWT R R +L    N+NDN FWMSF+DFC  F++LYVCRWYDP+RW      G W +         +  DTAAGLPS     CE+E+NPQ+ L ++  TDLK+   QT++      EV P   F++R       ++++  PARV  LS++ +++ TG P R+ ER++Y +L+ GTYV++   ++AGMEG   VE+ +N
Sbjct:    1 DDSPLWTIRLRRKLKATVNENDNTFWMSFDDFCNAFQTLYVCRWYDPKRWGTKTVHGMWTLGSGSAGAEEDSYDTAAGLPSKHNPNCEIESNPQWALHIHRPTDLKVKFSQTNERGSVGREVLPFVGFIVR-------SEVQGTPARVHSLSKQNIISDTGQPVREVERSVYASLSVGTYVLLAGTYVAGMEGPISVEVMSN 195          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A7S3UU73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU73_HETAK)

HSP 1 Score: 173 bits (439), Expect = 5.440e-45
Identity = 97/274 (35.40%), Postives = 152/274 (55.47%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMRED----LDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTD------DEVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPAD------PSELEKAFD---DSKAAGRIANMGLEKLGAMSAGLG---DKLNDNAD 969
            ++EW+GDW D S LWTRR + +L    ++ DN FWMSF+DFC  FRSLYVC   DP +W   E  G W++       +DTAAGLPS   + C++E NPQ+ L V   + ++++L Q +       E+ P   ++LR+ ++T          R++ ++R+ +VA TG   R+RE  +Y+ L  GTY ++ A ++AGMEG F+V++ +N  Q+   + +P  D        +L K  +   D       AN+   +  A +AGLG   D + D+ D
Sbjct:   59 HEEWKGDWSDLSSLWTRRTKYKLEWA-DEEDNTFWMSFDDFCNCFRSLYVCHNIDPNKWKSAEAHGRWDLGNAEEGRVDTAAGLPSRHNRSCKIEENPQYTLRVFRPSAVRLTLSQVEMTGLAAPEILPVTMYLLRQQQSTLK--------RITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAGMEGPFRVKVLSNY-QVALEQFYPAPDIEAKGLAGKLAKKLNEQADKXXXXXXANLDKAQAKATAAGLGGDPDAVKDDGD 322          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A7S2B0H8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B0H8_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.130e-43
Identity = 89/227 (39.21%), Postives = 126/227 (55.51%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMRED-----LDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTD------DEVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPADPSELE 861
            + EW+GDW D S LWTRR + RL +   D DN FWM+F+DFC  FR LYVCRWYDP RW   + +  W+  E       DT AGLP+     CE+ NNPQF   ++  TD+KI ++Q D       EV P A F+ R      +        R+  LS++ ++  TG P R RE N+Y +L+ G Y+++   ++AGMEG   + + +N    +  ++WPP    E E
Sbjct:  574 HDEWKGDWSDESTLWTRRTKHRLNVTVED-DNTFWMAFDDFCNCFRCLYVCRWYDPHRWQTQQLTAIWQNGEGGDENAYDTTAGLPTKHNPGCEVVNNPQFAFHIHRPTDIKIKIVQPDVGEANVSEVLPIAAFLCRPKHLGVA-------GRIQELSKDNIITDTGQPVRDREFNMYASLSPGVYILLVGTYVAGMEGQVDITVMSNYVA-RTEQIWPPVWTPEKE 791          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A7S3USS7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USS7_HETAK)

HSP 1 Score: 173 bits (439), Expect = 1.630e-43
Identity = 97/274 (35.40%), Postives = 152/274 (55.47%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMRED----LDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTD------DEVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPAD------PSELEKAFD---DSKAAGRIANMGLEKLGAMSAGLG---DKLNDNAD 969
            ++EW+GDW D S LWTRR + +L    ++ DN FWMSF+DFC  FRSLYVC   DP +W   E  G W++       +DTAAGLPS   + C++E NPQ+ L V   + ++++L Q +       E+ P   ++LR+ ++T          R++ ++R+ +VA TG   R+RE  +Y+ L  GTY ++ A ++AGMEG F+V++ +N  Q+   + +P  D        +L K  +   D       AN+   +  A +AGLG   D + D+ D
Sbjct:  215 HEEWKGDWSDLSSLWTRRTKYKLEWA-DEEDNTFWMSFDDFCNCFRSLYVCHNIDPNKWKSAEAHGRWDLGNAEEGRVDTAAGLPSRHNRSCKIEENPQYTLRVFRPSAVRLTLSQVEMTGLAAPEILPVTMYLLRQQQSTLK--------RITEITRDKIVADTGAAVRERELELYLNLQPGTYTILVATYIAGMEGPFRVKVLSNY-QVALEQFYPAPDIEAKGLAGKLAKKLNEQADKXXXXXXANLDKAQAKATAAGLGGDPDAVKDDGD 478          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A2D4BLI3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BLI3_PYTIN)

HSP 1 Score: 179 bits (453), Expect = 3.410e-43
Identity = 98/235 (41.70%), Postives = 133/235 (56.60%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTDD------EVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPADPSELEKAFDDSKAAGRIA 900
            + EW+GDW D S LWTRR +  L    + +DN FWMSF+DFC  FRSLYVCR+YDP +W  L + G W       TA GLP+     CELENNPQ+ L+V   T+L +++ Q D       +V P A +V+ +  A           RV RL +E VVA +G PARQRE ++   L +  Y ++ AA+  GMEG FK+ + TN P ++  +LWP          + D K AG +A
Sbjct: 2279 HAEWKGDWSDRSRLWTRRLKKLLAFNADADDNTFWMSFDDFCHAFRSLYVCRYYDPAKWPLLVRHGRWAGA----TAVGLPTRHNPGCELENNPQYTLQVTRPTELLLTVTQVDAAGLAPVDVLPIAVYVVAQGAARDRA------FRVKRLVQEEVVAHSGEPARQRELHLRCELPARAYTILLAAYKKGMEGPFKLTVQTNYP-VEVEQLWP--------ALWKDPKTAGGVA 2494          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A485LHZ7_9STRA (Aste57867_21065 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHZ7_9STRA)

HSP 1 Score: 173 bits (439), Expect = 2.010e-41
Identity = 102/282 (36.17%), Postives = 154/282 (54.61%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTDDE------VQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPA--DPS----------ELEKAFDDSKAAGRIANMGLEKLGAMSAGLGDKLNDNADKA--LNKARALE 999
            + EWRGDWGD+S LWTRR +  LG++ N NDN FWMSF+DFC  FR LYVC++YDP +W  +   G + ++   DTA+GLP+     C LENNP + LEV   T++ I++ Q D        V P A ++++   A  +T       RV  L +  VV  +G P R+R   I   L + TY ++  A+   MEG FKV I +N   +   ++WP    +P           +L++A ++++ A R+     +    ++AGL D L D  D+   L +A+ +E
Sbjct: 2246 HAEWRGDWGDDSPLWTRRLKKHLGVLANANDNTFWMSFDDFCNAFRCLYVCKYYDPDKWKTVTCHGEFSVK--ADTASGLPTRHNLDCALENNPHYALEVTRPTEVIITVTQVDKTGLAPVTVLPLAVYIVQNAMADRAT-------RVKTLDKAHVVQHSGQPVRERSLQIQCVLQARTYTLLVVAYKKEMEGPFKVTIQSNYA-VGVEQIWPAVWREPKAVNRVEAMALKLKEAVEETETAKRLKENATKYKNKIAAGLEDALEDEDDEVARLEEAKTIE 2517          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A6G0X9E6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9E6_9STRA)

HSP 1 Score: 172 bits (435), Expect = 6.430e-41
Identity = 99/280 (35.36%), Postives = 152/280 (54.29%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTDDE------VQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWP-----PADPSELEK-------AFDDSKAAGRIANMGLEKLGAMSAGLGDKLNDNADKALNKARALE 999
            + EWRGDW D+S LWTRR +  LG+  N NDN FWMSF+DFC  FR LYVC++YDP +WT     G++ +  D  TA+GLP+     C ++NNP + L+V   T + ++L Q D        V P A ++++      S+  +R  +RV  L +  VV  +GPP R+R   +  TL + TY ++ AA+  GMEG F+  I TN   +   ++WP     P   + +EK         +++ AA ++     +    ++AGL + L D +D+     +A E
Sbjct: 2216 HAEWRGDWADDSPLWTRRLKKHLGVTANANDNTFWMSFDDFCNAFRCLYVCKYYDPTKWTTQTFHGTFSVAHD--TASGLPTRHNPNCTVDNNPHYALDVTRPTQVILTLTQVDKTGLAPVTVLPLAIYIVQ------SSMTDRA-SRVKVLDKTNVVKHSGPPVRERRITLQCTLKARTYAIVVAAYQKGMEGPFQFTIQTNYA-VGMEQIWPAVWREPKQRTRVEKMALKLKETVEETAAAKKLVEQANKYKNRIAAGLDNALEDESDQVAELEQAAE 2485          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: F0WE76_9STRA (Uncharacterized protein AlNc14C72G4932 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WE76_9STRA)

HSP 1 Score: 171 bits (434), Expect = 8.620e-41
Identity = 94/241 (39.00%), Postives = 134/241 (55.60%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTDD------EVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPADPSELEKAFDDSKAAGRIANMGLEK 918
            + EW+GDW D+S  WTRR R  L    +  DN FWMSF+DFC  FRSLYVCR+YDP +W  +   GSW      DTA GLPS     CE+  NPQ++L+++  T++ I + Q D       +VQP   +V+   +A  S +  R  + V+ L++E VVA +G   R+R+  +   LA  TY ++ A +   MEG F++ I +N P +K  +LWPP    E  +     K A  I    +EK
Sbjct: 2235 HPEWKGDWSDSSRFWTRRLRRLLNYTPDVQDNKFWMSFDDFCHAFRSLYVCRYYDPTKWPSITMQGSWRTN---DTAGGLPSRHNSNCEIAKNPQYLLQLDRPTEIIIHVTQVDPSGIAAVDVQPFGIYVVAPSQA--SVKRTREVSLVAHLNKENVVAFSGEVKRERQIQLTCELAPRTYTILVATYRKEMEGFFRMAIQSNYP-VKCTQLWPPVR-KEKGEVTTTGKIAQTIKQNAIEK 2468          
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Match: A0A397A8M0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A8M0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 8.640e-41
Identity = 96/270 (35.56%), Postives = 152/270 (56.30%), Query Frame = 1
Query:  214 YKEWRGDWGDNSMLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRLEQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQTDDE------VQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQRERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWP-----PADPSELEK-------AFDDSKAAGRIANMGLEKLGAMSAGLGDKLNDNAD 969
            + EWRGDWGD+S LWTRR +  LG++ N NDN FWMSF+DFC  FR LYVC++YDP +WT+L + G++ ++ D  TA+GLP+     C LENNP + L V   T++ I+++Q D        V P A ++++   A  ++       RV  L +  V+  +G P R+R+ ++   L + TY ++ AA+   MEG F++ I +N   ++  ++WP     P   + +EK         +D+ A  ++     +    ++AGL D L D  D
Sbjct: 2265 HAEWRGDWGDDSPLWTRRLKKHLGVLANSNDNTFWMSFDDFCNAFRCLYVCKYYDPDKWTKLIRHGAFSIKSD--TASGLPTRHNPDCTLENNPHYSLGVTRPTEVIITVMQVDKAGLAPVTVLPIAVYIVQGAMADRAS-------RVKVLDKLHVIKHSGAPVRERQVSLQCVLQARTYTILIAAYKKDMEGPFQLTIQSNYG-VEVDQIWPAVWREPKAMNHMEKMAMKLKETVEDTAAGKKLVANATKYKNRIAAGLEDALQDEGD 2524          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig755.18739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ17_ECTSI3.170e-18598.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CAD0_9STRA4.860e-4842.57Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3UU73_HETAK5.440e-4535.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2B0H8_9STRA1.130e-4339.21Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3USS7_HETAK1.630e-4335.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2D4BLI3_PYTIN3.410e-4341.70Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A485LHZ7_9STRA2.010e-4136.17Aste57867_21065 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X9E6_9STRA6.430e-4135.36Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
F0WE76_9STRA8.620e-4139.00Uncharacterized protein AlNc14C72G4932 n=1 Tax=Alb... [more]
A0A397A8M0_9STRA8.640e-4135.56Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig755contigEcto-sp13_S_contig755:12952..17821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score568.2
Seed ortholog evalue2.3e-159
Seed eggNOG ortholog2880.D7FQ17
Model size1997
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG0045@1,KOG0045@2759,KOG4626@2759
EC2.4.1.255
Cds size882
COG Functional cat.O
CAZyGT41
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig755.18739.1prot_Ecto-sp13_S_contig755.18739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig755 13818..17572 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.6041086-UTR-Ecto-sp13_S_contig755:12951..138171681464023.6041086-UTR-Ecto-sp13_S_contig755:12951..13817Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig755 12952..13817 -
1681464023.7164578-UTR-Ecto-sp13_S_contig755:17572..178211681464023.7164578-UTR-Ecto-sp13_S_contig755:17572..17821Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig755 17573..17821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.6256254-CDS-Ecto-sp13_S_contig755:13817..139491681464023.6256254-CDS-Ecto-sp13_S_contig755:13817..13949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 13818..13949 -
1681464023.6367931-CDS-Ecto-sp13_S_contig755:14903..150381681464023.6367931-CDS-Ecto-sp13_S_contig755:14903..15038Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 14904..15038 -
1681464023.646755-CDS-Ecto-sp13_S_contig755:15421..154991681464023.646755-CDS-Ecto-sp13_S_contig755:15421..15499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 15422..15499 -
1681464023.6559944-CDS-Ecto-sp13_S_contig755:16068..163051681464023.6559944-CDS-Ecto-sp13_S_contig755:16068..16305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 16069..16305 -
1681464023.6695848-CDS-Ecto-sp13_S_contig755:16536..166141681464023.6695848-CDS-Ecto-sp13_S_contig755:16536..16614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 16537..16614 -
1681464023.6927166-CDS-Ecto-sp13_S_contig755:17047..171351681464023.6927166-CDS-Ecto-sp13_S_contig755:17047..17135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 17048..17135 -
1681464023.7057395-CDS-Ecto-sp13_S_contig755:17438..175721681464023.7057395-CDS-Ecto-sp13_S_contig755:17438..17572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig755 17439..17572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig755.18739.1

>prot_Ecto-sp13_S_contig755.18739.1 ID=prot_Ecto-sp13_S_contig755.18739.1|Name=mRNA_Ecto-sp13_S_contig755.18739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=294bp
MLWTRRRRARLGLVKNDNDNAFWMSFNDFCVVFRSLYVCRWYDPRRWTRL
EQSGSWEMREDLDTAAGLPSAQQKVCELENNPQFVLEVNCITDLKISLIQ
TDDEVQPAACFVLREDEATSSTQLERFPARVSRLSREVVVASTGPPARQR
ERNIYVTLASGTYVVMCAAFLAGMEGSFKVEITTNSPQLKFRKLWPPADP
SELEKAFDDSKAAGRIANMGLEKLGAMSAGLGDKLNDNADKALNKARALE
MGLKVAAAREKEERAKEDAELDAEDGRGRQQEQQQRVVENPYP*
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mRNA from alignment at Ecto-sp13_S_contig755:12952..17821-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig755.18739.1 ID=mRNA_Ecto-sp13_S_contig755.18739.1|Name=mRNA_Ecto-sp13_S_contig755.18739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig755:12952..17821- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCAAAACATACGGTGAACATGCTTGGAGCTTAAGCTCTGCTAATCTACG AACCCAAATGAACGATGTTGCGGTGATTTCCCAATATTAAGCAGCTCACT CTCGATTGACATCCAAGTGACGACAGGTCGGAGGCGTGATGTCGGTAAGG GAAGTTCAACGATTTTACCAGTATTGGGACCAGCCATAAACTGCCAAAAT CTCATCGATCTGTTATAAGGAATGGAGAGGAGACTGGGGGGACAACTCAA TGCTGTGGACACGCCGCCGACGGGCCCGCCTGGGGTTGGTGAAGAACGAC AACGACAACGCGTTTTGGATGTCGTTCAACGATTTCTGCGTCGTGTTCCG AAGCCTGTACGTCTGCCGGTGGTACGACCCACGGTAAGCGAGAAGGAGAT ACGAGGAGAGCTTGGGGAGGGGGGGGCGTTCTTGTTTGTGGCTCGGCGAC TGAGACGAGGGGTATGCTTCCTGTTCCTGGCAGTTTGACCTTAAGTTTGC GGTTAGACACCCTAGACTATGAGGTGCACCTAGTAAGAGGTTCAGAGAGG TATGCTAGTCTCTGTATTGTCGAGGGATCGTGAGATGTAGTTCTTTCTTC GAACCCCTGTCCCCGTGCCCGCTGCGCAACCACCCACCCGCACCCGCCCC GCCTGCGATCACATTGATTGACGCATAAAACAATAGACGATGGACTCGCC TCGAGCAGTCGGGCAGCTGGGAGATGCGCGAAGATCTCGACACTGCGGCC GGCCTTCCCTCTGCCCAGCAGAAGGTAAGATCTTGCAGCCGATCTACTAC TATCTCGGCAGGGGAGAGTGATTCCCCTGTCCGTTCCTGAAGCGGCATGG AAGTACGATGGCGTCCGTACCCGAACGTAAAGTCCGAGTGATCGTACACA ACCTGGGCCGACTTTCACACATCGATTGCCCCATATCCAAGAGGCTGCCA ATGCCGCGAAGGGTGGCGTTCGGCAAAATTCGTTGGGAACTTTTCTTGCA CGGACCCGTCAGTATTCGTGGTTTCTTGGTTGCGGAGCAGGGGAGGTCAG TCTGGTGGGGGGTGCGATCACGTACCTTTACGGTATTTCCCGGTACAACG GACAGCATGCGACGAATGTAGAAAAACGATACTCTTAACCCCGAGTCCTC GTCTCCCGTCTTAATTGTTTTGTGGTTCCTGTCAACGGGCCTATGTAACT GAACAAGGTGTGCGAGCTGGAGAACAACCCGCAGTTCGTCCTGGAGGTGA ACTGCATCACAGATCTCAAGATATCCTTGATACAGGTGAGGGCAAGCGTT TTGGCTTCAAGCACTTATCCCCGTTTGTGTGGATGTTTTTTGGTGGATTG GACACTTCGATGTAACTACCTCGCAATATGTGCAACTGAGCGCAATGCGC GACCAAGTTCGCCGACTTACAAATGCCAGCAACACTTCGAACGCAACTCC CCCCAAACCCTGATGCCCTGTTTCCTACGGACATACCGCATACCTTCTGA AAATTCTAAAAAATAGACTGACGACGAGGTCCAGCCAGCAGCGTGTTTCG TCCTTCGAGAGGACGAGGCGACGTCCAGCACACAGTTGGAGAGATTCCCT GCCAGAGTCTCGAGGCTCTCGAGGGAGGTGGTGGTGGCAAGTACAGGCCC CCCCGCGCGGCAGCGAGAGCGGAACATCTACGTGACCCTCGCGTCGGGTA CCTACGTGGTGATGTGCGCCGCCTTTTTGGCCGGCATGGAAGGGTCTTTC AAGGTGCGGTGCAACTGGAGCAACTGTGGTCGGGGGGGAGGAGTGTACGT CGTGGGTGAAGCTTTGTGAAAGGGTGAAGATGGAGCCAAATTTCGCCCCA CATTGTCACATTGTTTGTCTTTGATAGTCATTGCGTATTTTCGCGACCAT AAGTACAGCACAGCTCTATCGATTTACTGACGCAAGGCGATACGAAAGGT TGTTAGGGCCATTCTCTCGAGATCATTGGATCGGCACCAATAGTGTCTTC AATGAAAACGGTGGCAGACGCGGTTCCATACATTTTGTAAATGCCTGTAT TGATGCTGTTCATTATGTGGGGGACAAACATGTCATTGTAACACGCATGG GCTGTTGGTGTGGGATGGCTCGTCGCGCTGACAAGACGACCTTGTTGCTT CCTCTGTTCGAGTGTTTATTTCACAAAGAACCTCGTGGTTTCAACCCCAA CAGTCTCACGTGCGTCTGTGCTCCCAGGAACAGCAGGTCGGATTGTGTTC ACGTGCTCCTCTCTTGTTCCCGCCCCCCCTGTACGGCTGTTGTTGGTTGC CTCTAACTCCGGCATAGAGAAGGTGGAGATCACGACAAACTCCCCGCAAC TCAAGTTCCGCAAACTTTGGCCTCCAGCCGACCCCAGCGAGCTCGAAAAG GTATATTTTGCAGACCCGCAGCGTTTGTCTCTACCATCATGACCTCTACT CCACGCACAAAACATTGTGTGCACGCACATACAACCCTCCCGACAATCAG AACCCGCTTTGTTCGACGCTCGAACGGCTATGACTTTCGTCAATTTGAAA TGAAGCCCCCTACAATGTTCACGAAAGCCACCGAAACAGTTTTCGTTTGA AGTTGTTGTGCATAGACCGCTTCTCGTACGACGGGATTGCAGGTTGGAGA AATCTTCCGAGACACCATGTTTTTGAATGTTGTTGTGGACACCCAAGAAA ACTCATCTCATGAAATCGTCGCAAGAGTTGGTTCGATTGAACTTGATCCC TCTTCCGTCGGCGCGTATTATGCTACCGGTCAGGCGTTCGACGACAGCAA AGCTGCAGGGCGCATCGCTAACATGGGTCTCGAGAAGCTGGGGGCGATGA GTGCCGGACTGGGTGACAAGCTCAACGACAACGCCGACAAGGCGTTGAAC AAGGCCAGAGCTTTGGAGGTAAAATATCTGCCAGCATTATTAGCGAAATA TGCCGTGTTGACGGAATGTGACACATTTCTCTCCATATGTGTTGAAATCT ATTCGATAAAGATCTCTTCAACACCCTAGCTGACCCACTGGGATTGGCTA CGAGCCGAGTGTATATTTTATTTGATAAAGGATCATTTGAGTGCATGTAC AGTCGTAAGTACTACTCAGTCACCGATGACCGAGTAGTGTAATGGTTTAA GAATTTTTACACAAGGGTTCATGCACGGGTTCGAATCCTGCTAGTCTACT GACTAAACAATCACCATTCACTCTCCGATGATCGCATGGCGAGGGGTCCG GCTCCGAAGATCTCTTCAACACCCCAATTGACCCACTGGGGTTAGCTACG AGGCGAGAGTGTATCTTTTATTCGACAAAGGCGGACCATCTGACTACTTG CACAGTCAACCTTGACTGGTCAGATGTTCTTGTTTTATCTAATAAAACCG ACGGAAGCGAAGTACATCATTTTCCACAAACCGCCGGTCGTGCAGTACTG TAAACGAGTCGCATGCTTTCTGCGTCGGTATCTCACCAGGTTGTGCGGAC CGCAATAGTTGTGCCGAAAACAAACACCTTTTCATCAACATATCTACCAA AGTCGTCTCTACCCAGTCATGGATAACGTCAAGGACATTTTTTTGCTTTT CTGCCGTGCTCGGCCATTGAAAGGGTAAAGTCATGCCCAGAGGGAGAGAA CAGAACAGGAACAACACGAATCTTGGCCTGCCTGTGGGTTCTCTCCCACC ACCAAAATGTCGTCTGTGTCGCTTGTGTAGTTCGGTCTTTTTCCGGTGAG TCACTTTATTGGAATGCCAACTTATTGAATCGGTGCGACAATCAATCACC CCACGACGACGGTTTAACACTTGTTTTTGATCCCGCGTTTGTGTGTGCGC TTTGCAACCAACCAATCTCTAGATGGGCCTTAAGGTAGCCGCCGCAAGAG AAAAGGAAGAGCGTGCGAAGGAGGACGCAGAGCTAGACGCTGAAGATGGT AGAGGAAGGCAGCAAGAGCAGCAGCAGCGCGTGGTCGAAAATCCATACCC CTAGCGTATTCCACATGCAGCATGCAGAGCCGCATGATGTCGTGAGGCCG AATTGTATAGTACTTAATAGTAGTAGAGGGCAAGACTTAAACCGTAGAAG ATATAGCTGTCCTGTAGAACACGGACGGGCAGTCGCGTGGGAAGGGTTAT TGAGGAGATCAGGGGCAAGCATGTGATCTAATGCAGACAACACAGCACGT TCGGCCATCCATGAAACTGGTTGCTTTGAAATGTCGCCTTAGACTACACG GTGACCGATGCCTCCGGGAGGACAAGCATTAAGAGATCGTTCAAAAGCCT TCTGGTCCTGACATGTATGTTAGGCTAGATAGTGGACGGTCGGACTAAGA GAGGTCAAGACCGTGTTGAAAACATATTTTCTCTACTGGCGTAAGGAAGG GGCCGTCATTTTACAAGAAACAAAGCTTGATGTTGGTCAGAGAACGGCAT ACGTGCGTTTTCTCATTTCGAGCGTTGAGAACAGTCTTTTGTACCAGTCG TTGCTTTCGTGGCAGTCTTTCAGTCACACTGGGATCCATCGAGTCCATCT ACTTGATGAGACGAAGAGAAAAATTCGGGGGGCGGGAAGCCGGGAGGATG TGGTAGTTGTGGCGTAAGTCTACTTTTCACCGCATGCTTGACTTAACGTC TGGGGCATCTTGGAGGCCGACATACGAAGGTGCTACCACTATAGCTAACA CGAAAAAAGTCGAAAGTGAGCTCAGGCTGGTGTGTTTGACCATTCTGTAC CGCACGTTTTTGGAACGTTTCGGAAACAACGCATCAACATTTCTCGTGTG CGATGCCACCTAAACTTTGGGCATAGCTGTACTGCTATCCTGCCCCACGT GGGCACGGGAAGAAGCACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig755:12952..17821-

>mRNA_Ecto-sp13_S_contig755.18739.1 ID=mRNA_Ecto-sp13_S_contig755.18739.1|Name=mRNA_Ecto-sp13_S_contig755.18739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig755:12952..17821- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGTGGACACGCCGCCGACGGGCCCGCCTGGGGTTGGTGAAGAACGA
CAACGACAACGCGTTTTGGATGTCGTTCAACGATTTCTGCGTCGTGTTCC
GAAGCCTGTACGTCTGCCGGTGGTACGACCCACGACGATGGACTCGCCTC
GAGCAGTCGGGCAGCTGGGAGATGCGCGAAGATCTCGACACTGCGGCCGG
CCTTCCCTCTGCCCAGCAGAAGGTGTGCGAGCTGGAGAACAACCCGCAGT
TCGTCCTGGAGGTGAACTGCATCACAGATCTCAAGATATCCTTGATACAG
ACTGACGACGAGGTCCAGCCAGCAGCGTGTTTCGTCCTTCGAGAGGACGA
GGCGACGTCCAGCACACAGTTGGAGAGATTCCCTGCCAGAGTCTCGAGGC
TCTCGAGGGAGGTGGTGGTGGCAAGTACAGGCCCCCCCGCGCGGCAGCGA
GAGCGGAACATCTACGTGACCCTCGCGTCGGGTACCTACGTGGTGATGTG
CGCCGCCTTTTTGGCCGGCATGGAAGGGTCTTTCAAGGTGGAGATCACGA
CAAACTCCCCGCAACTCAAGTTCCGCAAACTTTGGCCTCCAGCCGACCCC
AGCGAGCTCGAAAAGGCGTTCGACGACAGCAAAGCTGCAGGGCGCATCGC
TAACATGGGTCTCGAGAAGCTGGGGGCGATGAGTGCCGGACTGGGTGACA
AGCTCAACGACAACGCCGACAAGGCGTTGAACAAGGCCAGAGCTTTGGAG
ATGGGCCTTAAGGTAGCCGCCGCAAGAGAAAAGGAAGAGCGTGCGAAGGA
GGACGCAGAGCTAGACGCTGAAGATGGTAGAGGAAGGCAGCAAGAGCAGC
AGCAGCGCGTGGTCGAAAATCCATACCCCTAG
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