mRNA_Ecto-sp13_S_contig7503.18696.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7FP37_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP37_ECTSI) HSP 1 Score: 244 bits (622), Expect = 1.910e-76 Identity = 138/220 (62.73%), Postives = 150/220 (68.18%), Query Frame = 1
Query: 1 MKSWSGATFGARERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDVAP 660
MKS SG TFGARERLAFALFCG SVFGLQAVAATDDF+GSS+AR VSLDTNV IFWT + + V + + W G G L + LLSAD SSGGLVFEAERALDTGDAQDRVF+ DSLDG + LLAAWGDS S+GY+DVNFAKGEVVMFGGSESADAAEPLVEV+ASEDFSYFDVAP
Sbjct: 1 MKSTSGTTFGARERLAFALFCGTSVFGLQAVAATDDFNGSSYARNVSLDTNVDIFWTIDLEAETIRV-AVHAKAASGWAGVGISEMGGMEGADIVYYEIATGNVTDAHSLVAGAPVVDECTQDWTLLSADASSGGLVFEAERALDTGDAQDRVFEDDSLDGALATRLLAAWGDSESLGYHDVNFAKGEVVMFGGSESADAAEPLVEVKASEDFSYFDVAP 219
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI) HSP 1 Score: 191 bits (486), Expect = 4.520e-54 Identity = 113/205 (55.12%), Postives = 125/205 (60.98%), Query Frame = 1
Query: 1 MKSWSGATFGARERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLV 615
MKSWSG TFGAR+R AFALFCG SV LQAVAA DDFDGSS+AR VSLDT V IFWT + + + + W G G L + LLSADVSSG LVFEAERALDTGDAQDRVF+ DSL + LLAAWGDS +GY+D N AKGEVVMFGGSE+ADAAEPLV
Sbjct: 1 MKSWSGTTFGARQRFAFALFCGTSVLSLQAVAAADDFDGSSYARNVSLDTTVDIFWTIDLEADTIRL-AVHAKAATGWAGVGISEMGGMEGADIVYYETATGNVTDAHSLVAGTPVVDECTQDWTLLSADVSSGSLVFEAERALDTGDAQDRVFEDDSLG---ATRLLAAWGDSEFMGYHDGNLAKGEVVMFGGSENADAAEPLV 201
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI) HSP 1 Score: 177 bits (450), Expect = 1.160e-48 Identity = 102/209 (48.80%), Postives = 123/209 (58.85%), Query Frame = 1
Query: 34 RERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDVAP 660
R+RLA +LFCG+ F LQAVAA DDFDGSS+AR VSLDTNV IFWT + + V + W G G L + LLSA+V G LVFEAERALDTGD QDRVF DS DG + +L AWGDS +VGY+ NFAKG+VVMFGGSE+ DAA+P+++V+ SED +FD AP
Sbjct: 2 RQRLAVSLFCGL--FVLQAVAAVDDFDGSSYARNVSLDTNVDIFWTVDLEAETIRV-AVHAKAATGWAGVGISEMGGMEGADIVFYETATGNLTDAYSLVAGTPVVDECTQDWTLLSAEVGDGSLVFEAERALDTGDDQDRVFSDDSFDGAIPTRVLTAWGDSDTVGYHGENFAKGQVVMFGGSENDDAADPVIDVKTSEDVQFFDAAP 207
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI) HSP 1 Score: 176 bits (445), Expect = 4.850e-48 Identity = 105/209 (50.24%), Postives = 128/209 (61.24%), Query Frame = 1
Query: 37 ERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWR-APT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDVAP 660
+RLA +L CG VF LQAVAA D FDGSS+AR VSLDTNV IFWT + + V + W G A C+ R +++ T LLSA+V +G LVFEAERALDTGD QDRVF DSLDG + +L AWGDS +VGY+D NFAKG+VVMFGGSE+ DAA+P+V+V+ SED +FD AP
Sbjct: 3 QRLALSLVCG--VFVLQAVAAADGFDGSSYARNVSLDTNVDIFWTVDLEAESIRV-AVHAKAATGWAGVGISEMGGMEGADIHCVLR--------------------DSYWT--LLSAEVGNGSLVFEAERALDTGDDQDRVFSDDSLDGTQPTRVLVAWGDSDTVGYHDENFAKGQVVMFGGSENDDAADPVVDVKTSEDVQFFDAAP 186
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI) HSP 1 Score: 118 bits (296), Expect = 3.610e-27 Identity = 70/190 (36.84%), Postives = 99/190 (52.11%), Query Frame = 1
Query: 85 QAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDV 654
Q VAA DFD SS+AR +S+D NV +FWT + + V + W G G + + + L+SA+ + GLVFEAERALDTGD+QD VF DS D + LLAAWGDS ++ Y+ NFAK EV+++GG E+++ +P++E+ D +FDV
Sbjct: 28 QVVAAQQDFDASSYARNISVDPNVDVFWTVDANLGTIKV-AVHAKAATGWAGLGVSEMGGMEGADIVYYETWTGNVTDAHAIVAGTPVTDECTQDWTLVSAEAGTDGLVFEAERALDTGDSQDHVFVDDSADDVLPTRLLAAWGDSETIAYHAANFAKAEVILYGGVENSNT-DPILELTTDPDIPFFDV 215
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7FSK3_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK3_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 1.470e-12 Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 13 SGATFGARERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSI 180
SG+T G +RLA +LFCG+ F L+ VAA DDFDGSS+AR VSLDTNV IFWT +
Sbjct: 8 SGSTHGMGQRLAVSLFCGL--FILKVVAAVDDFDGSSYARNVSLDTNVDIFWTVDL 61
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: A0A6H5K5H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H3_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 3.710e-8 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 3
Query: 174 IDLETETIRVAFHAKAASGLAGVGISEMGGMEGADIVYYETGT-GKETDAHSLVSGAPIVDECTQ 365
+D TI+ HAKAA+G AG+G+SEMGGMEG DIVYYETG G++T +G+ CT+
Sbjct: 57 VDANLGTIKAIVHAKAATGWAGLGVSEMGGMEGGDIVYYETGVRGRQTQ----FTGSGEAGLCTE 117 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7503.18696.1 >prot_Ecto-sp13_S_contig7503.18696.1 ID=prot_Ecto-sp13_S_contig7503.18696.1|Name=mRNA_Ecto-sp13_S_contig7503.18696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp MRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQback to top mRNA from alignment at Ecto-sp13_S_contig7503:4340..6411+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7503.18696.1 ID=mRNA_Ecto-sp13_S_contig7503.18696.1|Name=mRNA_Ecto-sp13_S_contig7503.18696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7503:4340..6411+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7503:4340..6411+ >mRNA_Ecto-sp13_S_contig7503.18696.1 ID=mRNA_Ecto-sp13_S_contig7503.18696.1|Name=mRNA_Ecto-sp13_S_contig7503.18696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7503:4340..6411+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |