mRNA_Ecto-sp13_S_contig7503.18696.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7503.18696.1
Unique NamemRNA_Ecto-sp13_S_contig7503.18696.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7FP37_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP37_ECTSI)

HSP 1 Score: 244 bits (622), Expect = 1.910e-76
Identity = 138/220 (62.73%), Postives = 150/220 (68.18%), Query Frame = 1
Query:    1 MKSWSGATFGARERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDVAP 660
            MKS SG TFGARERLAFALFCG SVFGLQAVAATDDF+GSS+AR VSLDTNV IFWT  +    + V     +  + W        G              G       L           +   LLSAD SSGGLVFEAERALDTGDAQDRVF+ DSLDG   + LLAAWGDS S+GY+DVNFAKGEVVMFGGSESADAAEPLVEV+ASEDFSYFDVAP
Sbjct:    1 MKSTSGTTFGARERLAFALFCGTSVFGLQAVAATDDFNGSSYARNVSLDTNVDIFWTIDLEAETIRV-AVHAKAASGWAGVGISEMGGMEGADIVYYEIATGNVTDAHSLVAGAPVVDECTQDWTLLSADASSGGLVFEAERALDTGDAQDRVFEDDSLDGALATRLLAAWGDSESLGYHDVNFAKGEVVMFGGSESADAAEPLVEVKASEDFSYFDVAP 219          
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7FP38_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP38_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 4.520e-54
Identity = 113/205 (55.12%), Postives = 125/205 (60.98%), Query Frame = 1
Query:    1 MKSWSGATFGARERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLV 615
            MKSWSG TFGAR+R AFALFCG SV  LQAVAA DDFDGSS+AR VSLDT V IFWT  +    + +     +    W        G              G       L           +   LLSADVSSG LVFEAERALDTGDAQDRVF+ DSL     + LLAAWGDS  +GY+D N AKGEVVMFGGSE+ADAAEPLV
Sbjct:    1 MKSWSGTTFGARQRFAFALFCGTSVLSLQAVAAADDFDGSSYARNVSLDTTVDIFWTIDLEADTIRL-AVHAKAATGWAGVGISEMGGMEGADIVYYETATGNVTDAHSLVAGTPVVDECTQDWTLLSADVSSGSLVFEAERALDTGDAQDRVFEDDSLG---ATRLLAAWGDSEFMGYHDGNLAKGEVVMFGGSENADAAEPLV 201          
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7G216_ECTSI (DOMON domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G216_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 1.160e-48
Identity = 102/209 (48.80%), Postives = 123/209 (58.85%), Query Frame = 1
Query:   34 RERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDVAP 660
            R+RLA +LFCG+  F LQAVAA DDFDGSS+AR VSLDTNV IFWT  +    + V     +    W        G              G       L           +   LLSA+V  G LVFEAERALDTGD QDRVF  DS DG   + +L AWGDS +VGY+  NFAKG+VVMFGGSE+ DAA+P+++V+ SED  +FD AP
Sbjct:    2 RQRLAVSLFCGL--FVLQAVAAVDDFDGSSYARNVSLDTNVDIFWTVDLEAETIRV-AVHAKAATGWAGVGISEMGGMEGADIVFYETATGNLTDAYSLVAGTPVVDECTQDWTLLSAEVGDGSLVFEAERALDTGDDQDRVFSDDSFDGAIPTRVLTAWGDSDTVGYHGENFAKGQVVMFGGSENDDAADPVIDVKTSEDVQFFDAAP 207          
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7G337_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G337_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 4.850e-48
Identity = 105/209 (50.24%), Postives = 128/209 (61.24%), Query Frame = 1
Query:   37 ERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWR-APT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDVAP 660
            +RLA +L CG  VF LQAVAA D FDGSS+AR VSLDTNV IFWT  +    + V     +    W        G    A   C+ R                    +++ T  LLSA+V +G LVFEAERALDTGD QDRVF  DSLDG   + +L AWGDS +VGY+D NFAKG+VVMFGGSE+ DAA+P+V+V+ SED  +FD AP
Sbjct:    3 QRLALSLVCG--VFVLQAVAAADGFDGSSYARNVSLDTNVDIFWTVDLEAESIRV-AVHAKAATGWAGVGISEMGGMEGADIHCVLR--------------------DSYWT--LLSAEVGNGSLVFEAERALDTGDDQDRVFSDDSLDGTQPTRVLVAWGDSDTVGYHDENFAKGQVVMFGGSENDDAADPVVDVKTSEDVQFFDAAP 186          
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D8LD47_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD47_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.610e-27
Identity = 70/190 (36.84%), Postives = 99/190 (52.11%), Query Frame = 1
Query:   85 QAVAATDDFDGSSFARKVSLDTNVAIFWTTSISRPKLFVWPSTPRLLAAWRA*ASLRWGAWRAPT*CITRQVRGRRRMRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQGDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLVEVRASEDFSYFDV 654
            Q VAA  DFD SS+AR +S+D NV +FWT   +   + V     +    W        G              G       +      +    +   L+SA+  + GLVFEAERALDTGD+QD VF  DS D    + LLAAWGDS ++ Y+  NFAK EV+++GG E+++  +P++E+    D  +FDV
Sbjct:   28 QVVAAQQDFDASSYARNISVDPNVDVFWTVDANLGTIKV-AVHAKAATGWAGLGVSEMGGMEGADIVYYETWTGNVTDAHAIVAGTPVTDECTQDWTLVSAEAGTDGLVFEAERALDTGDSQDHVFVDDSADDVLPTRLLAAWGDSETIAYHAANFAKAEVILYGGVENSNT-DPILELTTDPDIPFFDV 215          
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: D7FSK3_ECTSI (DOMON domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK3_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.470e-12
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query:   13 SGATFGARERLAFALFCGISVFGLQAVAATDDFDGSSFARKVSLDTNVAIFWTTSI 180
            SG+T G  +RLA +LFCG+  F L+ VAA DDFDGSS+AR VSLDTNV IFWT  +
Sbjct:    8 SGSTHGMGQRLAVSLFCGL--FILKVVAAVDDFDGSSYARNVSLDTNVDIFWTVDL 61          
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Match: A0A6H5K5H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H3_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.710e-8
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  174 IDLETETIRVAFHAKAASGLAGVGISEMGGMEGADIVYYETGT-GKETDAHSLVSGAPIVDECTQ 365
            +D    TI+   HAKAA+G AG+G+SEMGGMEG DIVYYETG  G++T      +G+     CT+
Sbjct:   57 VDANLGTIKAIVHAKAATGWAGLGVSEMGGMEGGDIVYYETGVRGRQTQ----FTGSGEAGLCTE 117          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7503.18696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FP37_ECTSI1.910e-7662.73DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FP38_ECTSI4.520e-5455.12DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7G216_ECTSI1.160e-4848.80DOMON domain-containing protein n=2 Tax=Ectocarpus... [more]
D7G337_ECTSI4.850e-4850.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD47_ECTSI3.610e-2736.84DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FSK3_ECTSI1.470e-1264.29DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5H3_9PHAE3.710e-850.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7503contigEcto-sp13_S_contig7503:4340..6411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score167.2
Seed ortholog evalue4.7e-39
Seed eggNOG ortholog2880.D7FP37
Model size664
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.octopamine biosynthetic process
EggNOG OGsKOG3568@1,KOG3568@2759
Cds size348
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464019.520803-UTR-Ecto-sp13_S_contig7503:4339..46381681464019.520803-UTR-Ecto-sp13_S_contig7503:4339..4638Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7503 4340..4638 +
1681464019.5324361-UTR-Ecto-sp13_S_contig7503:5295..53111681464019.5324361-UTR-Ecto-sp13_S_contig7503:5295..5311Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7503 5296..5311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464019.5430825-CDS-Ecto-sp13_S_contig7503:5311..54861681464019.5430825-CDS-Ecto-sp13_S_contig7503:5311..5486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7503 5312..5486 +
1681464019.5544438-CDS-Ecto-sp13_S_contig7503:6238..64111681464019.5544438-CDS-Ecto-sp13_S_contig7503:6238..6411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7503 6239..6411 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7503.18696.1prot_Ecto-sp13_S_contig7503.18696.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7503 5312..6411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7503.18696.1

>prot_Ecto-sp13_S_contig7503.18696.1 ID=prot_Ecto-sp13_S_contig7503.18696.1|Name=mRNA_Ecto-sp13_S_contig7503.18696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
MRTPLCRARLSSTNAHKTGPLLSADVSSGGLVFEAERALDTGDAQDRVFQ
GDSLDGRTTSSLLAAWGDSVSVGYYDVNFAKGEVVMFGGSESADAAEPLV
EVRASEDFSYFDVAPA
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mRNA from alignment at Ecto-sp13_S_contig7503:4340..6411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7503.18696.1 ID=mRNA_Ecto-sp13_S_contig7503.18696.1|Name=mRNA_Ecto-sp13_S_contig7503.18696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7503:4340..6411+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCGTGGTCCGGAGCCACATTCGGAGCGAGGGAACGACTTGCGTT CGCCCTCTTCTGCGGCATATCCGTGTTTGGTCTCCAGGCTGTTGCCGCGA CAGATGACTTTGACGGCTCCTCCTTCGCCAGGAAGGTGTCGCTTGACACC AACGTCGCCATCTTCTGGACTACATCGATCTCGAGACCGAAACTATTCGT GTGGCCTTCCACGCCAAGGCTGCTAGCGGCTTGGCGGGCGTAGGCATCTC TGAGATGGGGGGCATGGAGGGCGCCGACATAGTGTATTACGAGACAGGTG TGAGTGTCAAGGAGGACCCGAATCACAGGGTGTCCTTTGATTGACTTTTA CCATAATCGGTTCTCCTTCGAACATGGCCGATCGTCTAGGACACTGGTTC AACCTGTTGTTCCCACACTTTTCTCTTGGCTAGACATTTTTCCCATGTAC GCAAGTGAGTGTCATTCCTGAGAACTCCTCTTGGACTCTATCCGACAAAG AACCTGGGACACTTGCATCGAATTACGTGCCCTGGCTACAAGAGTTTCCC AGTCGAGGGTCAACTTCTGTAGGTGAGGAGAGTAAAGGAGGACCCCATTC GCAGGGTATCCGTCGATTGACTTTTACCAGAACCGCTACGCCTTCCCATA GTGCTCACCCTGGCAGATTGGGCCACTGTAGTTGGTTGATTTGGGGAGAG AGAGCGACATGTAAGAACCGATGTGTTTCCCCACCCGTTTGAATGTGCAG TCACGTTCGATAGTCGCCATGATCGTGTCAAAGTAATGCATGGTTTGCTG CGCACGTCCGAGCTAGTTTGCAAGTCGCGCTTCCTGTCCAACAAGAAATG TTTCAAATGCTCACTGATTTGCCCGCGAGGTGGGCCGATCTCGACCTCAA ATATACAATGTTTCCACCACACACCCCTCTTGCTCGCCCATTTTCCACGC ATCAAGACGGGGAAGGAGACGGATGCGCACTCCCTTGTGTCGGGCGCGCC TATCGTCGACGAATGCACACAAGACTGGACCTTTGCTATCTGCAGACGTC AGCAGCGGGGGCCTTGTGTTCGAGGCGGAGAGAGCTCTGGACACGGGAGA CGCGCAAGATCGGGTCTTCCAGGGCGACAGCCTCGACGGAAGGACGAGTT CGTTAGTGCATGTAGCGTTCATACTATCCAGAACCATCCTCGACAGCGGC ACGCGCTTGCTCGATGTACAGAAAGACGCATTCCGCGTCAAGCAGGAGGG CGGCGCCCCACCCAGGCCTGAACCTCCTTTTCATCGTCCTGCACAAGAAC TCGTGGCCAGTTAGTAGTGTAGACCTGTTTCTTGGAGACTGTGGGTGACC ACGCCTGGGGACGGGTACATTGAGTCTTGGCCGCTCCGTGTGGTGGAATG CCTCGAGGGTGTGAAGTGAATCACGTTGAGAGCAAGAAAAAGCTTGCCTC CTTTCACATTGAGATTTAACGGCGCTCGAATGTACCGAAAATTGAATCCT GACCGTTCGAGACCTCCCTACCATTGCCACAAGGGAAACAACTTTGGGGT TTATATACACATTTGGGGATGGAAGAAAAATACGCTGACGATCCGCGCTT CAATCCCCCCCCCCCCACTTTGCTCGACCCGTATCCACCGGACCATCCTC CCCTGATCACGCTGTCAAGTAGCGAACTGAAACCACGTATCCGCGTCTGC CGCCCGAAGTTTGCCCCGATAGTTTAGACTCACTTCCTAGACGGCTCGTG TGGCAAACGCACACAATCACGTCAATTCCCAGTGCATAAATGATTACGAC ACGTAGTCGTCAAGGACGCAATGAAACTCTACGGGTACGATCACGCTCTC GTGAATCGACTGTCTGTGACTCATTTTTTTATACCCACAGGAGCTCTAGC CTCGAGTCTCCTCGCCGCGTGGGGCGACTCGGTGTCCGTGGGTTACTACG ACGTCAACTTTGCCAAAGGAGAAGTTGTCATGTTCGGCGGATCGGAGAGC GCTGACGCGGCAGAACCGCTGGTCGAGGTCAGGGCTAGTGAGGACTTCAG CTATTTCGATGTTGCGCCGGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7503:4340..6411+

>mRNA_Ecto-sp13_S_contig7503.18696.1 ID=mRNA_Ecto-sp13_S_contig7503.18696.1|Name=mRNA_Ecto-sp13_S_contig7503.18696.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7503:4340..6411+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCACTCCCTTGTGTCGGGCGCGCCTATCGTCGACGAATGCACACAA
GACTGGACCTTTGCTATCTGCAGACGTCAGCAGCGGGGGCCTTGTGTTCG
AGGCGGAGAGAGCTCTGGACACGGGAGACGCGCAAGATCGGGTCTTCCAG
GGCGACAGCCTCGACGGAAGGACGACCTCGAGTCTCCTCGCCGCGTGGGG
CGACTCGGTGTCCGTGGGTTACTACGACGTCAACTTTGCCAAAGGAGAAG
TTGTCATGTTCGGCGGATCGGAGAGCGCTGACGCGGCAGAACCGCTGGTC
GAGGTCAGGGCTAGTGAGGACTTCAGCTATTTCGATGTTGCGCCGGCA
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