mRNA_Ecto-sp13_S_contig7486.18673.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7486.18673.1
Unique NamemRNA_Ecto-sp13_S_contig7486.18673.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: D8LTJ1_ECTSI (DFRP_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ1_ECTSI)

HSP 1 Score: 411 bits (1057), Expect = 3.430e-143
Identity = 263/269 (97.77%), Postives = 264/269 (98.14%), Query Frame = 1
Query:    4 PPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPAVAVETKAKQVQETFVIEEGEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVDNDTMKQRNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVKVEEALFEGDDEDLDDLDDDEGA 810
            PPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPAVAVETKAKQVQETFVIEEGEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLS+LSGRALYDYDATLFEDDADAVDNDTMKQRNDXXXXXXXXXXXXXXXXXXXXXXXX     GVKVEEALFEGDDEDLDDLDDDEGA
Sbjct:    2 PPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPAVAVETKAKQVQETFVIEEGEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSVLSGRALYDYDATLFEDDADAVDNDTMKQRNDXXXXXXXXXXXXXXXXXXXXXXXXGGVPAGVKVEEALFEGDDEDLDDLDDDEGA 270          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A835ZLI2_9STRA (DFRP_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLI2_9STRA)

HSP 1 Score: 170 bits (430), Expect = 4.800e-48
Identity = 112/202 (55.45%), Postives = 143/202 (70.79%), Query Frame = 1
Query:   55 LIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVK--KGGTAGKGKTP-AVAVETKAKQVQETFVI-EEGEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVDNDTMKQRND 648
            +IEDKTFGLKNK+KSK+VQ+Y++TV+K+V ++     ++A K+K+          E E+ ALF+EAL+ G K  K G  GKG  P  VAV+T+ KQVQETFV+ EE EKT+ED+IEEQR KL  EGK GTPV  ETLA WKA R A +  EERR V+ EM KK K KGL++LSGRAL+DYDA+LF+DD DA   +    R +
Sbjct:   14 VIEDKTFGLKNKSKSKAVQQYVATVEKNVKNSAGAAQAEANKAKRXXXXXXXXXAELEMKALFNEALVAGKKAPKAG-GGKGAEPDPVAVDTREKQVQETFVVAEETEKTIEDLIEEQRAKLAAEGKAGTPVTSETLAAWKARRAAARRDEERRMVEREMAKKGKKKGLAVLSGRALFDYDASLFKDDEDACGQEETSLREE 214          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A7S3M6K0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M6K0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.620e-30
Identity = 97/240 (40.42%), Postives = 143/240 (59.58%), Query Frame = 1
Query:   13 QQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMA--SKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPAVAVETKAKQVQE--------------------TFVIEEGE-------KTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVDNDTMKQRN 645
            Q+  KKAV  KK++ I++ TFGLKNKNKSK VQ++I+ V+KSV +  Q   +DAAK+K+M   +K A++ QE EL  LF+E +     K  +A   K  A+ +  ++K++                       F+ +E E       KT+ED+IEEQR KL  EGK+GTPV  E+ A W+  + A+K AE   +V+AE+ KK  GKGLS+LSG+ L++Y+++LF DD  A+D    +  N
Sbjct:   21 QKPSKKAVREKKEKTIDEATFGLKNKNKSKKVQQFINRVEKSVKN--QNGGADAAKAKEMKKENKLAQQLQEEELRILFNEGIANQFGKKKSAAAAKAGALGLTEQSKEIAAFMEGISSDDSDDESDNDEGPIFIDDEPEATVIFREKTIEDIIEEQRAKLAAEGKKGTPVTAESFATWRTAKLAQKQAEAEARVKAELTKKKGGKGLSVLSGKELFNYNSSLFVDDDGAIDESEEQAMN 258          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A7S2BQG9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG9_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.940e-26
Identity = 99/243 (40.74%), Postives = 138/243 (56.79%), Query Frame = 1
Query:    4 PPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEAL--LTGVKKGGTAGKGKTPAVAVETKAKQVQET------FVIEE----------------------------GEK-TLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVD 621
            P K+   KKA   KK ++IEDKTFGLKNKNKSK VQ +I  VQ +V S+  + A +  K++K A+K AK   + EL ALF+EAL    G+KK  T    +    A   K ++ ++T      F+ +E                             EK TLE +IE +R K+  EG+ GTPV +E+LA+WK+DR+ ++      KV+AEMKKK  GKGLS+LSG+ L+ Y+ +LF DD +A D
Sbjct:    3 PKKKNANKKADQKKKDKIIEDKTFGLKNKNKSKKVQGFIKNVQNNVQSSSGKNA-EQMKAEKKAAKVAKMQADEELRALFNEALDGSGGLKKQKTKKDKQKEQAASIRKEERDKDTLMKDYPFIADEMLAMTGMLNDMEPEELDEQLAIFKKTGKSEKLTLEQIIELERAKMRAEGRIGTPVTEESLARWKSDREERRRLANIAKVEAEMKKKKGGKGLSVLSGKDLFAYNQSLFVDDEEADD 244          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A7S1VVP4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VVP4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.820e-26
Identity = 107/280 (38.21%), Postives = 143/280 (51.07%), Query Frame = 1
Query:   58 IEDKTFGLKNKNKSKSVQKYISTVQKSV-NSTE--QQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPA-------------------VAVETKAKQVQETFVIEEGE-KTLEDMIEEQRTK----LHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLF----EDDADAVDNDTMKQRNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVKVEEALF-EGDDEDLDDLDDD 801
            IEDKTFGLKNKNKS  V+ ++ +V+KSV NS +   +R  +    +K  +K  +KA + E  ALFDEALL   KKG     GK  A                   +  +  AK+++E    +     TLED IE +R +    L   GK GTPV +E+   W+  ++ +K  E R+KV+AE+KKK  GKGLS+LSGRALY+Y   LF    ED A  V   ++ + N                                KVEE LF EGDD+DLDDLD+D
Sbjct:   25 IEDKTFGLKNKNKSAKVRAHVKSVEKSVLNSGDPRMRRLEEQRTKQKAEAKARRKAAKQEQQALFDEALLAVQKKGKNLKAGKVSAQGRDGDDDKKKAGTSRAMKMMYQMDAKEMEERLRDDPNYVPTLEDNIEAERQRKLAELKESGKTGTPVTEESFRAWQERKRKRKADEARKKVEAELKKKKGGKGLSVLSGRALYEYKKELFVDKDEDGAAVVSPKSIPEEN-----------------------GNSVDHVAEKVEENLFLEGDDDDLDDLDED 281          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A6T6H7B8_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6H7B8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.400e-25
Identity = 114/286 (39.86%), Postives = 146/286 (51.05%), Query Frame = 1
Query:   25 KKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMAS--KEAKKAQEAELAALFDEALLTGVKKGGTAGK-GKTPAVAVE----------TKAKQVQETFVIEEGEK----------TLEDMIEEQRTKLHREGK---QGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVDNDTMKQRNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVKVEEALF-EGDDEDLDDLDDD 801
            KK    KK ++IED+TFGLKNKNKSK VQ++I +V K V S +++   +  K K+M    K  KKA+EAE  ALF EALL   KK  T  K GK  A   +          ++A ++      +E E           TLED IE +R K   E K   QGT V  E+ A WK  ++ ++  E R+KV+AE KKK  GKGL+ILSGR L++Y   LF  D D  D    KQ +D                               KV+  LF EGDD+DLDDLDDD
Sbjct:   13 KKTEQKKKNKIIEDRTFGLKNKNKSKKVQQHIQSVTKQVMSVDRRTRMEEEKRKQMRKDHKLRKKAEEAERNALFGEALLAVKKKKTTNQKDGKQEAKGRDGNDESAKKGTSRAMKMMYQMDAQEMEDRLKEDPNYVPTLEDEIESERQKKVAELKKSGQGTKVTPESFAAWKEKKRKRRAEEARKKVEAEFKKKKGGKGLAILSGRDLFEYKRELF--DKDLEDGAADKQVDDV----------------------------AAKVQSDLFLEGDDDDLDDLDDD 268          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A6T7LTW9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7LTW9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.690e-25
Identity = 105/293 (35.84%), Postives = 150/293 (51.19%), Query Frame = 1
Query:   13 QQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSV---NSTEQQRASDAAKSKKMASKEA-KKAQEAELAALFDEALLT--------GVKKGGTAGKGKTPAVAVETK---AKQVQETFVIEEGEK------------TLEDMIEEQRTKLHRE----GKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVDNDTMKQRNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVKVEEALFEGDDEDLDDLDD 798
            +++ KKA   KK++L++DKTFGLKNKNKS  VQ Y+ + ++S+    +  + R  DA K ++  +++A KKA+EAE AALF EAL+         G K G    KG+      E K   ++ ++  F ++  E             TLED +E QR K  RE    G +GTPV QET   W+  ++ +K A  ++ V+ EMKKK  GKGLS+LSGR LY+Y   LF+D       D +   N                               +KVE+ LF   D+DLDDL+D
Sbjct:   10 EKESKKAAQKKKEKLLDDKTFGLKNKNKSSKVQAYVKSTERSILNAGTDARTRQMDAQKKEQAKARKALKKAKEAEQAALFGEALMAVSKKGPKFGAKAGKVEAKGRDGGDENEKKGGTSRAMKMMFQMDAQEMEDKLREDPNYVPTLEDEVESQRQKKLRELKASGVKGTPVTQETFKVWQDKKRKRKEAATKKMVEKEMKKKKGGKGLSVLSGRELYNYKKDLFQDQEGDDGGDNVVDVN-------------------------AAAEVALKVEQDLFLEGDDDLDDLED 277          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A7S1BEE4_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEE4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.880e-25
Identity = 88/237 (37.13%), Postives = 140/237 (59.07%), Query Frame = 1
Query:   13 QQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNST---EQQRASDAAKSKKMASKEAKKAQEAELAALFDEALL-----TGVKK----------GGTAGKGKTPAVAV----ETKAKQVQETFVIE-EGEKTLEDMIEEQRTK----LHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVDNDTMKQR 642
            +Q+  KA    K +L+EDKTFG+KNK+KS  VQ  + ++  ++ ++   ++++ ++  K KK A+K  +KA + E  ALF EAL+     T VKK          GG A   KT + A+    +  AK++++ F  + +   TLED IE QR      L + G++GTP+ +E+L  W+  ++ +K  E ++ V+ E+KKK  GKGLS+LSGRALY Y+  LF DD +A D + + +R
Sbjct:    9 EQQSSKAANKAKAKLVEDKTFGMKNKSKSSKVQAQVRSITNNIMNSGDPKERKRAEMLKQKKSAAKAMRKAADQEREALFGEALMAVSKKTSVKKKGENSAIGRDGGDAASKKTTSRAMKMMYQMDAKELEDKFKDDPDYVPTLEDEIESQRQAKLKALEKSGRKGTPITEESLKAWQERKRRRKAEEAKKLVETELKKKKGGKGLSVLSGRALYSYNKKLFVDDENAEDKNDIAER 245          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A7S2R4K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4K8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.220e-24
Identity = 97/253 (38.34%), Postives = 137/253 (54.15%), Query Frame = 1
Query:    4 PPKQQK-GKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRASDAAKSKKMASKEAKKAQEAELAALFDEAL--LTGVKKGGTA-GKGKTPAVAVETKAKQVQET-----FVIEE-----------------------------GEKTLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADAVDNDTMKQRND 648
            PPK+ K  KK+ + +K ++IEDKTFGLKNK KSK+VQKYI +V  +V +       +  + +K A+K AK   + EL  LF+EAL    G KK  T   K K  A A++  A   Q+      F+ +E                                TLE +IE QR K+  EG+ GTPV +ETLAKW+ DR  ++      +V AE++KK  GKGL++LSG+ L+ YD +LF DD +A D D  ++ +D
Sbjct:    2 PPKKNKESKKSESKRKDKIIEDKTFGLKNKKKSKTVQKYIQSVTSNVKNGRGAAEEEKRRQEKKAAKIAKMQADEELRILFNEALDGSLGPKKAKTKKDKQKEQAAALKKDAADSQKNLKDYPFIADEMLAMTGMLNELSPQELEEELQTFIRTGVSTRLTLEQVIELQRAKMRSEGRVGTPVTEETLAKWREDRAERRRQANAERVAAELRKKKGGKGLAVLSGKDLFTYDRSLFVDD-EAADIDEYERTSD 253          
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Match: A0A7S1U4V3_9STRA (Hypothetical protein (Fragment) n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4V3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.750e-24
Identity = 88/210 (41.90%), Postives = 125/210 (59.52%), Query Frame = 1
Query:   28 KAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNSTEQQRA---SDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKTPAVA---VETKAKQVQETFVIEEGEK--------TLEDMIEEQRTKLHREGKQGTPVNQETLAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFEDDADA 615
            K  A ++ ++IEDKTFGLKNK KSK VQ+Y++ V+K V S+ +QR     +  ++++ A++ AK+A+E EL  +F  +L  GV  G   G G+    A    E KA +       EE  K        T+ + IE  R +LH  G+ GTPV  ET AKWKADR A   A+   KV+ E+KK  +GKGLS+L+GR L++  + LF DDA+A
Sbjct:   59 KGEAKRQNKVIEDKTFGLKNKKKSKKVQQYVNRVKKQVQSSGRQRGFKTDEEKQAERKAARLAKQAEEKELREIFATSLDGGVI-GAPKGSGRRKRSAKQRAEAKAVEXXXXXXEEEAAKAVDPYAGMTVVERIEAMREELHMRGETGTPVTAETFAKWKADRAAAAKAQAEEKVEKELKKGARGKGLSVLTGRELFEVRSELFRDDANA 267          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7486.18673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTJ1_ECTSI3.430e-14397.77DFRP_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835ZLI2_9STRA4.800e-4855.45DFRP_C domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S3M6K0_9STRA3.620e-3040.42Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2BQG9_9STRA1.940e-2640.74Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1VVP4_9STRA4.820e-2638.21Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6T6H7B8_9STRA1.400e-2539.86Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A6T7LTW9_9STRA1.690e-2535.84Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1BEE4_9STRA3.880e-2537.13Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2R4K8_9STRA1.220e-2438.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1U4V3_9STRA2.750e-2441.90Hypothetical protein (Fragment) n=4 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7486contigEcto-sp13_S_contig7486:3..5412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score416.4
Seed ortholog evalue1e-113
Seed eggNOG ortholog2880.D8LTJ1
Preferred nameZC3H15
Model size813
KEGG koko:K03243,ko:K06185
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000981,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006518,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0007166,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0015031,GO:0015833,GO:0015931,GO:0016973,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0023052,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0033036,GO:0034097,GO:0034613,GO:0034641,GO:0034645,GO:0042221,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903506,GO:2000112,GO:2001141
Exons9
EggNOG free text desc.cytokine-mediated signaling pathway
EggNOG OGsCOG5252@1,KOG1763@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_005810.1
Cds size813
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03012
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7486.18673.1prot_Ecto-sp13_S_contig7486.18673.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7486 3..5412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464017.503545-CDS-Ecto-sp13_S_contig7486:2..1281681464017.503545-CDS-Ecto-sp13_S_contig7486:2..128Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 3..128 -
1681464017.5194387-CDS-Ecto-sp13_S_contig7486:623..7101681464017.5194387-CDS-Ecto-sp13_S_contig7486:623..710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 624..710 -
1681464017.5312486-CDS-Ecto-sp13_S_contig7486:1449..15421681464017.5312486-CDS-Ecto-sp13_S_contig7486:1449..1542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 1450..1542 -
1681464017.5447521-CDS-Ecto-sp13_S_contig7486:2190..22711681464017.5447521-CDS-Ecto-sp13_S_contig7486:2190..2271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 2191..2271 -
1681464017.5582001-CDS-Ecto-sp13_S_contig7486:2594..27471681464017.5582001-CDS-Ecto-sp13_S_contig7486:2594..2747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 2595..2747 -
1681464017.5729787-CDS-Ecto-sp13_S_contig7486:3184..32531681464017.5729787-CDS-Ecto-sp13_S_contig7486:3184..3253Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 3185..3253 -
1681464017.5879724-CDS-Ecto-sp13_S_contig7486:3954..40471681464017.5879724-CDS-Ecto-sp13_S_contig7486:3954..4047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 3955..4047 -
1681464017.5978475-CDS-Ecto-sp13_S_contig7486:4829..48861681464017.5978475-CDS-Ecto-sp13_S_contig7486:4829..4886Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 4830..4886 -
1681464017.6075282-CDS-Ecto-sp13_S_contig7486:5358..54121681464017.6075282-CDS-Ecto-sp13_S_contig7486:5358..5412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7486 5359..5412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7486.18673.1

>prot_Ecto-sp13_S_contig7486.18673.1 ID=prot_Ecto-sp13_S_contig7486.18673.1|Name=mRNA_Ecto-sp13_S_contig7486.18673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=271bp
QPPKQQKGKKAVATKKKQLIEDKTFGLKNKNKSKSVQKYISTVQKSVNST
EQQRASDAAKSKKMASKEAKKAQEAELAALFDEALLTGVKKGGTAGKGKT
PAVAVETKAKQVQETFVIEEGEKTLEDMIEEQRTKLHREGKQGTPVNQET
LAKWKADRKAKKLAEERRKVQAEMKKKNKGKGLSILSGRALYDYDATLFE
DDADAVDNDTMKQRNDEDDDEDGRPDGEEEKEGAAGAAAAGGAAAGVKVE
EALFEGDDEDLDDLDDDEGA*
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mRNA from alignment at Ecto-sp13_S_contig7486:3..5412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7486.18673.1 ID=mRNA_Ecto-sp13_S_contig7486.18673.1|Name=mRNA_Ecto-sp13_S_contig7486.18673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5410bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7486:3..5412- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCGCCGAAGCAGCAGAAGGGCAAGAAGGCTGTCGCCACCAAGAAGAA GCAGGTGAATTGTGAAGCTTGCGTTTTAAAAGGGCCGCTTGTGTCCTGAG TGCTCTGTCGCTTGTGACCTCTTTCTTTCCCGCTAGTCCTGCTAGCTTTT GCCACATGCGTGACGTTTGTGCGATCGGCGGTGTGTTTGACGTTATGAGC GATCCGCACGATGAACATCGAGATGGTGGAAAGAACGACCGATTCTGACC TTGTGCTTACACGAGTACAGCGCAGTGCAGCACGCGAGAGTGTAGGAGTT TGTTCTTATGGGCACCGTGAGCTACATGCACGTTCGAAAACAAATGGCTT GCTTGGCATAGCGTGGATAGCAAGACGACAATGGCGGAGTTTTGTTTTCA TCGCTGAACCGTTTCTCCTGCACCATCCCCCTCCCCCCGTCGTATTGGCG GGGCCACCCTCGAATATCTCTCTCGGTTGTTGTCGTTGCCTGTTATGGAT GCCCTACACCTGCTGTGTCTTCGTAGCTGATCGAGGACAAGACCTTCGGC CTCAAGAACAAGAACAAGAGCAAGTCCGTCCAGGTACTGCTGTCAGCTGT GATGATATCTACCAGTCGTCATGTCATGTCATGTGCGGGCGAAGGCTTCT CCTCGTGTACGTCCACCCCTGTACACGAATTGCGCCATAGCTCTCCCTCC ATTCACTAGCTCAGCGGCATTCTCGATAGCCCACCCTCTCCCTTACGCGC CTCAATGCAGAGGACAGCGAAAACACCGCGAGATTCCTGTAGATCATGTT TCAGATAATGTTGACCCTTGACCACCTGAGGGTATGGCCTTGTCTCAAAA GGGCTTCGATACAAGGGCAAGTTGACACCTTTCCGGTGAAGAGAATGCAA TGCTGAAATTGTTGAACTACAGTTCTACGCACACCATACAAGCATGGTGC ACATGTCGGTGCTGCCAGCTCTGTTTTCTTTATCGCTTTGGGCTAATAGT CCCGTCTGGCTCTTGCACACCTCCCGCCGAAGATCCCAAACTTGTGGGGC AAGCGCCCTTAGCGCACACCGCGGCAAATAGGTATCCAGTTGGGTTCTTC ACGAGCTTGTGCAAATTTGCCGTTCGATATATCGCGGTCCTGACGCTTTT GTTGCATTAACACTGACGGGTTTTGCCGTCAGATGCGTTAGCGGCTCTGA TCATTTTTTGCACCGGAGAGGATGAGATGTGTGCGACCCACACCAAGCAA GCAGCAGCCCAATGTGTACTCTCATTCCAATATTTGACTCTTTATTCGGG GCCATTGCGTGTTGTCGGGACGGTGGGTATGGGTATCTCTCGTCGGTACG CTATTTATTCTTCAGAAATACATCAGCACCGTGCAGAAGAGCGTCAACTC GACGGAGCAGCAACGCGCTTCCGATGCCGCCAAGAGCAAGAAGATGGCTT CAAAGGAGGTACAGAACGCTATCATTCACTTCAGAAGGGTCGACTGTAAT TGCGACTGGCGTGTCGGCAGATCATGGGTTTTTGCGGTTTGATCGTCCAA CACCTGCGCTTCTTTCTCACGTTTGTGGAAAACGTCGAAGTCGATGCGTT TAGATTGCAACGATGCTGGCTGAATGATCATCGCTGTTGCTGGTCAGAGG AAGTACGGCACCGCGGACACCTTTAGTTGGGTGGTGCAACAGCACTTGAA CATATCCACGTGGCAAAATACATTGTGCTTGCGTTGCCTTACCCGTACGG GTTGGCCAATGATGCCCGAGTCTTCATCTCCCGTTTCTACGTTGCTGCTT CATCTTCTATGCCGATTAGGTAGTTTGCGCTTTCAATCGAAGGCACATGT TGTGCAGCAATCTGCGCATGGTCTGTCGGATAAACTCGAAGAGGTACGGG TACATGCCGATTTGTGGGGACGGCGAGGGTGAGTTCATTGACAACGATGA GAGACCCCGGGGAGCTGCTGCTGCTGTTGTCGTTGTTTGACCCAGTGGGA TCCCGTTTTTTCACCCAGCTTGAGTCGTGCTTCATCAAGTCCTACTCGTT GTGTACTCGTCGTTGCCCTAAACACTCGCCCGGCAGCATCAAAATCTCAT TCCAAATAATAGTCGGCTATTTTTTCTCAATGTTCCCGGACTGACGTTTC GTGTCTCAGGCGAAGAAAGCGCAGGAGGCGGAGCTTGCGGCCTTGTTTGA CGAGGCCCTCCTCACCGGAGTGAAGAAGGTGCGATGCAAGAAGCTTGTCG ATTAGTCTGAAGGTGTTGGGGCGGTGGTGTGTTGAGGCAGTGTACTGGAC GAGGAAAGTGGTACATTTGCATTCTACGAGCAGCACTGCTGGACGTCGTT TTGGTTTCCTGTCTGCGGTTATACTCCTTTCCCGCGACGTGTTTTGTGTG TTTGCCATGAGAAACTCATCCGCGCGCGTTTTCGCCATGATCATCAACGA AACTTGCAACCTCTTCCATGAGCCACCCGACAAAGCTCTCTGTACCTTGA AATGGATTGCTACAAAGCCCAACAACGTTTGTGACGCCGAATATGCAAGC CATGTCATTGTTTCAGTCCCCCTTGATAGTTAGAACCTTTTCTTTATTTT GTCCTTTATTCGAAACGATATGTTGGTCTGTTGATGATGGTGTGGCGCGG TGGTGATAACACCAGGGTGGCACTGCCGGGAAGGGGAAGACCCCAGCGGT GGCCGTCGAAACGAAGGCCAAACAGGTTCAAGAGACCTTCGTTATCGAGG AGGGAGAGAAGACCTTGGAGGACATGATCGAGGAGCAGAGAACTAAGCTG CACAGGGAGGGCAAGCAGGTGAGTCAGAACCACGAGCACGGGACGAAGGG AGAAAAGAGCCGCCGCTGCGCGGTGGGGGCATTCCTGACTCTACTCGTCT AGTTATCTTGGCTTGTCTAACTCATGGGCGTGGATAATACAATCGGCAAT TTGCGTCGCATGCGCCCGTTGTTTCACGGCTGATCTCGGGAAAAAATGTG ACAACACAATTTGCAACAGCTTCAAGTGTACATGTATGTATCCTTGACGA CAGTTTCTTTGCTCGACACCCTTATCTACTTGTCGCTTCTTGCCACGTTG CTTTCTTTGCCTACGCTGTACCATCGCCATCTTCCTTCCAGGGTACTCCC GTAAACCAGGAGACCTTGGCAAAGTGGAAGGCGGATCGGAAGGCGAAAAA GCTTGCGGAAGAGCGGCGCAAGGTAGGTTGGTGGTTACGGTACACTGGCG TGGAGTGGTGTTGGTGTTACACATGTTTGTTGCCGCTGCTGTTTAAGAGC CTTTGCTTGTCACCATATATGTGATTTGCCTCTGCTCTGGATGTCGCGAA CACTCCTCATATGGGTGTTGCTCTTGTTGGTGTTGCTCCTGTTGGGAGTC TTCAGCGTTCGGGAGGCGCAACGCCCCCCGACTCACACGGTTGGCTATTT AAACGCTCCGTGCTCGTCCGCTCCATGCGATTTCTTACCTTTAGCTGGAG CTACTGCTGTGTGGGTTTCAGTAAATTGCGATGTATTCTTCAAGGGTGAA TTTAGTATCAACTCACTTGTGCGGTGCTGAAGGTCACGAACAAGGGTATA TGGTCTATGCACGTGTATCATAACCGAACTGCCGTTGGTAAGCAAGTAAG ACGTTATATATGTAGTGGCCACTGTTGTGCATGCGTGCATTTCGTTCGTT ACATGTGTGCTGCGAGAATCCGCTTCGCGGTTGGGTTCTGTTTTTCGTGC TTATCAAGTGTTCTTGTTTGTTGAACGGCACGTCTGATTGCAACTGCCGT GTATTGTGGTCTGACTGACACCGAGAGTCCGCCCGTCGCGTCAACATTGG TGTGTTTTGCGTCGTTGCAGGTCCAGGCGGAGATGAAGAAGAAGAACAAG GGCAAGGGGCTGTCCATCCTCAGCGGTCGAGCCCTGTACGACTACGACGC CACTCTCTTCGAGGTGCTATTAATATAATGGTATACAGAAGCTGAAGCCG AATAGTAAGAGCCCAGGGAACACACATCTTTCCCGACATACAAAGTATCA GCCCAGCGCTTCTGCCGGCAGTGTTAGTTGTCGCGGGGGGGGGGGTTGGG ATGGTCGCTCCGTGGGACACGGAATGCCGTCTACAAGTAGAAAAACATGA ACACCGTCGCTCCCGCAGCGAAGGTGGTGATGATGCAAGCTTCGTCTAGA GGAGGACTGTACTATAGTAAGCGTCACGCCTGCCCGACTCCGTTTATTGG CATCGCTGTGTCGGCGCCCGATTGTGTCGAATGGACGAGAGGTAGAAGTG TTGACAAACTTGTAGGCGATACCCGACAAGCTGGCCCCGTGCGGGGTTAC ACCCAAGAACTCATCTAGGTGCATACTATTCATTGTATGCATGCAAAATC TGCATAATTTTTGTTGTGGATATTTTATGTTTTTCAGTGTTGGGGATGCA ATATCGGTTGGAGTGCGACGTTCAGCGATGCTTGTTGGCAGAAGCATGGT GCCGAAAAGAATCTCTTGTTGCACTTGTGCTGGGTATAGTGTGGTAAGAG TACGTTTTGTCTTGTCAACCCACTCGTGTTGTATTCTACCACGTGCCACT TTGCTGCCTGTTGTGTAGCTCTGCCGCTCTACGTTCCGGCGTCTTGAGGA AGAACACTGCCAACATTGTGTTTGCCGGCCGTGCACGTGATTTTTGCGAC AGGACGATGCGGACGCTGTGGACAACGACACGATGAAACAGCGCAATGAC GAGGACGACGACGAGGACGGGCGACCAGATGGCGAAGAGGTACGGGCTTA TTGTAGACGATATCGTGATATTGTTGGATTGTTGCGTTCCGAACGCACAC CCACGACTGGTGAGGCATTGTCCGCGACACGGATGTTGTTCGGTTTTGTA CGGGTTTTGACGATAATCGCGTGTTTGGCAACCGCGTGCGCGGGTGATGC GGCGACATCAACAGACGTGACGCTTGCAAGGCCATGGTGTGGACTCACCG ACCGGTGTTGCGACTTTGTTTTGAGGCCTTCGTTGCTTGCGGCTTCCCGC GGGCTGGAAAGGTATTTTGATATTCATGTGTTGCCGTATTCCAGTCCTGC GGCGCTCGCTTGCTTTTCAGGACTTTGTATTAGTATTGATGCGCGAAAAC ACAAGAGATTTTCCTCGAGTACTGCATGCTCCCCCGACGCCAGAATTCAG CTTGTAGTGTCGTGTGTATAATCGTGAATGGCGGAGCATGCATGGGTCAA CAATTATACTTCCCGAATCGCGAAACTGGCGCAGGAGAAGGAAGGCGCTG CGGGAGCAGCGGCAGCAGGAGGGGCAGCAGCGGGGGTTAAGGTGGAGGAG GCGTTGTTCGAAGGAGACGATGAGGACTTGGATGACTTGGATGACGATGA GGGGGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7486:3..5412-

>mRNA_Ecto-sp13_S_contig7486.18673.1 ID=mRNA_Ecto-sp13_S_contig7486.18673.1|Name=mRNA_Ecto-sp13_S_contig7486.18673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=813bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7486:3..5412- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCCGCCGAAGCAGCAGAAGGGCAAGAAGGCTGTCGCCACCAAGAAGAA
GCAGCTGATCGAGGACAAGACCTTCGGCCTCAAGAACAAGAACAAGAGCA
AGTCCGTCCAGAAATACATCAGCACCGTGCAGAAGAGCGTCAACTCGACG
GAGCAGCAACGCGCTTCCGATGCCGCCAAGAGCAAGAAGATGGCTTCAAA
GGAGGCGAAGAAAGCGCAGGAGGCGGAGCTTGCGGCCTTGTTTGACGAGG
CCCTCCTCACCGGAGTGAAGAAGGGTGGCACTGCCGGGAAGGGGAAGACC
CCAGCGGTGGCCGTCGAAACGAAGGCCAAACAGGTTCAAGAGACCTTCGT
TATCGAGGAGGGAGAGAAGACCTTGGAGGACATGATCGAGGAGCAGAGAA
CTAAGCTGCACAGGGAGGGCAAGCAGGGTACTCCCGTAAACCAGGAGACC
TTGGCAAAGTGGAAGGCGGATCGGAAGGCGAAAAAGCTTGCGGAAGAGCG
GCGCAAGGTCCAGGCGGAGATGAAGAAGAAGAACAAGGGCAAGGGGCTGT
CCATCCTCAGCGGTCGAGCCCTGTACGACTACGACGCCACTCTCTTCGAG
GACGATGCGGACGCTGTGGACAACGACACGATGAAACAGCGCAATGACGA
GGACGACGACGAGGACGGGCGACCAGATGGCGAAGAGGAGAAGGAAGGCG
CTGCGGGAGCAGCGGCAGCAGGAGGGGCAGCAGCGGGGGTTAAGGTGGAG
GAGGCGTTGTTCGAAGGAGACGATGAGGACTTGGATGACTTGGATGACGA
TGAGGGGGCGTAA
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