mRNA_Ecto-sp13_S_contig74626.18650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74626.18650.1
Unique NamemRNA_Ecto-sp13_S_contig74626.18650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74626.18650.1 vs. uniprot
Match: A3JI34_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 TaxID=270374 RepID=A3JI34_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 7.730e-6
Identity = 36/114 (31.58%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:   40 IAGYAALSYQLVFYFMASLAGLTEGLAVAITLTSSVLIAGIGSLTAPRFFRSPRVP-EVLLGAYCLALFCALRLAPDNTLTRLLSSVPQPWNSLPFLLLTGLPYYLSGSLLPLY 378
            +AG+AALSYQ+V Y + S++GL++  +VA +LT+ V ++  G+L + R   +   P E+LLG Y L +F  L+     ++  +  ++      + F+++      L+G+L+PL+
Sbjct:   23 VAGFAALSYQIVSYKLISISGLSDATSVATSLTAFVALSAAGALLSTRISPALTGPLEILLGVYGLIVFGGLKYFGIESVFMISGTMSASVKMILFVIVVAPIAVLTGALIPLH 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74626.18650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A3JI34_9GAMM7.730e-631.58Uncharacterized protein n=1 Tax=Marinobacter sp. E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74626contigEcto-sp13_S_contig74626:214..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size378
Hectar predicted targeting categorysignal peptide
Exons1
Cds size378
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464015.731121-CDS-Ecto-sp13_S_contig74626:213..5911681464015.731121-CDS-Ecto-sp13_S_contig74626:213..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74626 214..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74626.18650.1prot_Ecto-sp13_S_contig74626.18650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74626 214..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74626.18650.1

>prot_Ecto-sp13_S_contig74626.18650.1 ID=prot_Ecto-sp13_S_contig74626.18650.1|Name=mRNA_Ecto-sp13_S_contig74626.18650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MKSAVRFMHFRSLIAGYAALSYQLVFYFMASLAGLTEGLAVAITLTSSVL
IAGIGSLTAPRFFRSPRVPEVLLGAYCLALFCALRLAPDNTLTRLLSSVP
QPWNSLPFLLLTGLPYYLSGSLLPLY
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mRNA from alignment at Ecto-sp13_S_contig74626:214..591+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74626.18650.1 ID=mRNA_Ecto-sp13_S_contig74626.18650.1|Name=mRNA_Ecto-sp13_S_contig74626.18650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74626:214..591+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAATCGGCGGTTAGGTTTATGCATTTTCGTTCTCTAATCGCAGGATA
CGCTGCCCTTTCGTATCAGTTAGTTTTCTATTTCATGGCTAGCCTGGCAG
GTCTAACGGAAGGTTTGGCCGTTGCTATAACATTGACGTCTTCTGTATTA
ATTGCCGGGATAGGTTCGCTTACGGCACCCCGCTTCTTCCGATCTCCACG
CGTCCCTGAGGTCTTGCTAGGCGCCTACTGCCTGGCATTATTTTGTGCGC
TAAGGCTCGCTCCAGATAACACTCTCACAAGGCTGTTGTCTTCAGTCCCA
CAGCCTTGGAACTCTCTACCTTTCCTATTGTTGACAGGCCTACCCTATTA
TTTGTCTGGGAGCTTGCTTCCCCTCTAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74626:214..591+

>mRNA_Ecto-sp13_S_contig74626.18650.1 ID=mRNA_Ecto-sp13_S_contig74626.18650.1|Name=mRNA_Ecto-sp13_S_contig74626.18650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74626:214..591+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAATCGGCGGTTAGGTTTATGCATTTTCGTTCTCTAATCGCAGGATA
CGCTGCCCTTTCGTATCAGTTAGTTTTCTATTTCATGGCTAGCCTGGCAG
GTCTAACGGAAGGTTTGGCCGTTGCTATAACATTGACGTCTTCTGTATTA
ATTGCCGGGATAGGTTCGCTTACGGCACCCCGCTTCTTCCGATCTCCACG
CGTCCCTGAGGTCTTGCTAGGCGCCTACTGCCTGGCATTATTTTGTGCGC
TAAGGCTCGCTCCAGATAACACTCTCACAAGGCTGTTGTCTTCAGTCCCA
CAGCCTTGGAACTCTCTACCTTTCCTATTGTTGACAGGCCTACCCTATTA
TTTGTCTGGGAGCTTGCTTCCCCTCTAT
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