prot_Ecto-sp13_S_contig74626.18650.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig74626.18650.1
Unique Name	prot_Ecto-sp13_S_contig74626.18650.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	126

Homology

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BLAST of mRNA_Ecto-sp13_S_contig74626.18650.1 vs. uniprot
Match: A3JI34_9GAMM (Uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 TaxID=270374 RepID=A3JI34_9GAMM)

HSP 1 Score: 53.9 bits (128), Expect = 7.730e-6
Identity = 36/114 (31.58%), Postives = 68/114 (59.65%), Query Frame = 0

Query:   14 IAGYAALSYQLVFYFMASLAGLTEGLAVAITLTSSVLIAGIGSLTAPRFFRSPRVP-EVLLGAYCLALFCALRLAPDNTLTRLLSSVPQPWNSLPFLLLTGLPYYLSGSLLPLY 126
            +AG+AALSYQ+V Y + S++GL++  +VA +LT+ V ++  G+L + R   +   P E+LLG Y L +F  L+     ++  +  ++      + F+++      L+G+L+PL+
Sbjct:   23 VAGFAALSYQIVSYKLISISGLSDATSVATSLTAFVALSAAGALLSTRISPALTGPLEILLGVYGLIVFGGLKYFGIESVFMISGTMSASVKMILFVIVVAPIAVLTGALIPLH 136

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig74626.18650.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig74626.18650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A3JI34_9GAMM	7.730e-6	31.58	Uncharacterized protein n=1 Tax=Marinobacter sp. E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 89..107
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 39..59
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..38
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 108..125
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..33
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 126..126
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 60..70
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 71..88
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	TMHMM	TMhelix		coord: 71..88
None	No IPR available	TMHMM	TMhelix		coord: 103..125
None	No IPR available	TMHMM	TMhelix		coord: 39..58

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig74626	contig	Ecto-sp13_S_contig74626:214..591 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig74626.18650.1	mRNA_Ecto-sp13_S_contig74626.18650.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig74626 214..591 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig74626.18650.1 ID=prot_Ecto-sp13_S_contig74626.18650.1|Name=mRNA_Ecto-sp13_S_contig74626.18650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MKSAVRFMHFRSLIAGYAALSYQLVFYFMASLAGLTEGLAVAITLTSSVL
IAGIGSLTAPRFFRSPRVPEVLLGAYCLALFCALRLAPDNTLTRLLSSVP
QPWNSLPFLLLTGLPYYLSGSLLPLY