mRNA_Ecto-sp13_S_contig7461.18649.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI) HSP 1 Score: 466 bits (1200), Expect = 3.660e-160 Identity = 238/245 (97.14%), Postives = 242/245 (98.78%), Query Frame = 1
Query: 1 QLNAATELGLLIVTSFEENGREVDEARLSQLKRVAVAMTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMGMLGQLMGG 735
+LNAATELGLLIVTSFEENGREVDEARLSQLKRVAVAMTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEY+ALVKQW+AKGYPGETDLFICRAVLHTLSYDRTEDAG LLDACASWVLGEDAASSPGSE SSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDV+LDDLLNRIGDVHF IKPPQPGGLMGMLGQLMGG
Sbjct: 66 ELNAATELGLLIVTSFEENGREVDEARLSQLKRVAVAMTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYSALVKQWAAKGYPGETDLFICRAVLHTLSYDRTEDAGVLLDACASWVLGEDAASSPGSEASSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVNLDDLLNRIGDVHFGIKPPQPGGLMGMLGQLMGG 310
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: H3GH30_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH30_PHYRM) HSP 1 Score: 102 bits (255), Expect = 1.390e-20 Identity = 74/252 (29.37%), Postives = 127/252 (50.40%), Query Frame = 1
Query: 1 QLNAATELGLLIVTSFEENGREVDEARLSQLKRVAVAMTP----GVEMSEFLKRAIRWT--RHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMGMLGQLMGGM 738
Q AA E+G L+++ F + VDE +++++A A P V+++ LK A++W+ + EL+L++AR+ T+G+ A ++F + P E A +V +WS KGYP E+DL++ RAVL LS + DA ++ + ++ S + V + PL++FTRF++ ++ L+E Y +L RD L L+ IG + ++PP+ G L +L GGM
Sbjct: 88 QNTAAAEMGNLMLSVFADFRHPVDETHKRRIRQLAAAFEPKPQFSVDLALVLKNAVKWSAAHGARKRGDPELQLLLARAYRTSGDFTHAMKHFLHAENPQELAEVVFEWSTKGYPSESDLYLARAVLQLLSLENLRDANKVYEVYV-------------AKCQSAGRPV-DLPLFNFTRFLLLTLEM-----------------LQERYAPALARDSSLKSYLSVIGQKFYGLQPPRSG-LSSLLEMFSGGM 307
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: M4C6B5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6B5_HYAAE) HSP 1 Score: 95.5 bits (236), Expect = 5.360e-18 Identity = 69/249 (27.71%), Postives = 122/249 (49.00%), Query Frame = 1
Query: 10 AATELGLLIVTSFEENGREVDEARLSQLKRVAVAMTP----GVEMSEFLKRAIRWT--RHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMGMLGQLMGGM 738
AA E+ L+V+ F + V+E ++++A A +++ FLK A++W+ + ++ EL+L++AR+ T G+ A ++F + P E A + QWS +GYP E+DL++ RAVL LS + DA ++ + + A ++ PL +FTRF++ + +L F L+E Y +L RD L ++ IG + ++PP+ G L +L GG+
Sbjct: 93 AAVEMANLMVSVFADFNHPVEEKHKQSVRQIASAFEQKPQFSADVTVFLKNAVKWSAAKGSRKRGDPELQLLLARAYCTAGDFPHAMKHFLHAENPEEMADALFQWSTRGYPSESDLYLARAVLQLLSLENLRDANKVYEVYVA--------------KCQDAGRPVDLPLINFTRFLLLTLERDALP---------LFQMLQERYAPALARDSSLTSYVDIIGQKFYGLQPPRSG-LSSLLEMFSGGV 317
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: M4C6B6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6B6_HYAAE) HSP 1 Score: 70.1 bits (170), Expect = 1.530e-9 Identity = 40/124 (32.26%), Postives = 71/124 (57.26%), Query Frame = 1
Query: 10 AATELGLLIVTSFEENGREVDEARLSQLKRVAVAMTP----GVEMSEFLKRAIRWT--RHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVL 363
AA E+ L+V+ F + V+E ++++A A +++ FLK A++W+ + ++ EL+L++AR+ T G+ A ++F + P E A + QWS +GYP E+DL++ RAVL
Sbjct: 177 AAVEMANLMVSVFADFNHPVEEKHKQSVRQIASAFEQKPQFSADVTVFLKNAVKWSAAKGSRKRGDPELQLLLARAYCTAGDFPHAMKHFLHAENPEEMADALFQWSTRGYPSESDLYLARAVL 300
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: UPI0009011AAF (Golgi to ER traffic protein 4 homolog n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009011AAF) HSP 1 Score: 62.8 bits (151), Expect = 4.920e-7 Identity = 59/225 (26.22%), Postives = 101/225 (44.89%), Query Frame = 1
Query: 91 LKRVAVAMTPGVEMSE----FLKRAIRWTRHTKTE--AAFELRLIMARSAVTTG---NLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQP-GGLMGMLGQLMGG 735
+++VA A+T E FLK A++W+ + EL ++A + ++ + + +F P ++ + V + K YPGE DL I RAVL LS DA ++D +VSS E L F +++ Q ++ FNKLR VY+ S+ER+ ++LL+ I + + ++ P G+ G + ++MGG
Sbjct: 123 MQKVAEALTAAKTRVEACTSFLKAALKWSHEFGAHKYGSPELHDMLAEYIFSESPEVDMGKVSFHFVRGKNPKKFTSTVINFMGKCYPGEEDLAIARAVLMYLSLGNLRDANYIMDELK-------------KQVSSKELEFPELELMQFISYLLLTLQ---------RDAIPLFNKLRVVYKLSIEREPTFNELLDEIAEKFYGLRRQSPLQGMFGDIFKMMGG 325
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: A0A161Y7Z6_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y7Z6_DAUCS) HSP 1 Score: 60.1 bits (144), Expect = 3.620e-6 Identity = 63/278 (22.66%), Postives = 120/278 (43.17%), Query Frame = 1
Query: 1 QLNAATELGLLIVTSFEENGREVDEARLSQLKRV-----AVAMTPGVEMSE----------------------FLKRAIRWTRH--TKTEAAFELRLIMARSAVTTG---NLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQP-GGLMGMLGQLMGG 735
Q+ EL +L+V + + E L +++R+ + +T ++MS+ FLK AIRW+ + + E+ ++A + ++A+ + +F ++A+ + ++ K YPGE D+ I RAVL LS DA +L+D ++ S L F +++E Q +L FN+LR+ Y +SL+RD L++LL+ + + + ++ P + G + ++MGG
Sbjct: 67 QVTCGAELAVLLVETLVKGKFPYGEDTLERIRRIYEKFPRIPVTHNLDMSDDDMQRVHEALGAAKTRVECCSSFLKAAIRWSTEFGAQRNGSPEIHDMLAEYIYSESPEVDMAKVSFHFVRGKDLEKFASTLVNFTGKCYPGEDDMAIARAVLLYLSLGNLGDANDLVDEVQ-------------KQMQDKELDYPHSELIEFINYLLETLQRDALP---------LFNRLRQTYASSLDRDPALNELLDVVAEKFYGVRRRNPMQDMFGDIFKMMGG 322
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: J3JZ83_DENPD (Uncharacterized protein n=2 Tax=Dendroctonus ponderosae TaxID=77166 RepID=J3JZ83_DENPD) HSP 1 Score: 56.6 bits (135), Expect = 4.850e-5 Identity = 64/259 (24.71%), Postives = 103/259 (39.77%), Query Frame = 1
Query: 1 QLNAATELGLLIVTSF---EENGREVDEARLSQLKRVAVAMTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWS-AKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMGMLGQLMGGM*TPARDVGD 765
Q + +LGLL++ E+ E+ +LS L + T E FL +A++W+ + L +A+ N +A ++ S A L+ ++ KG+ E DLF+ +AVL L A + + A+ PL +F F+++ + K L F L E Y+ SLERD L++IG + F +KPPQP G+ G L+ D D
Sbjct: 64 QKASGADLGLLLIDVLIKSEDKSTEIWCRKLSTLF-AKIGTTYATERDSFLVQAVKWSSLGSSRGDPALHQYIAKVYWDELNYNQARHHYIHSQDGKNCAKLLIEFQMTKGFKCEIDLFVTQAVLQFLCLRNQITASQTFTTY-----------TENHPTIKKAEPPYLLPLLNFLWFLLQALETKKLQ---------TFAVLCEQYQKSLERDPCYLQYLDKIGQLFFGLKPPQPKKSGGLFGSLIDNFLEGLEDGSD 301
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: N6SSD1_DENPD (Uncharacterized protein (Fragment) n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=N6SSD1_DENPD) HSP 1 Score: 57.0 bits (136), Expect = 7.380e-5 Identity = 64/259 (24.71%), Postives = 103/259 (39.77%), Query Frame = 1
Query: 1 QLNAATELGLLIVTSF---EENGREVDEARLSQLKRVAVAMTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWS-AKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMGMLGQLMGGM*TPARDVGD 765
Q + +LGLL++ E+ E+ +LS L + T E FL +A++W+ + L +A+ N +A ++ S A L+ ++ KG+ E DLF+ +AVL L A + + A+ PL +F F+++ + K L F L E Y+ SLERD L++IG + F +KPPQP G+ G L+ D D
Sbjct: 454 QKASGADLGLLLIDVLIKSEDKSTEIWCRKLSTLF-AKIGTTYATERDSFLVQAVKWSSLGSSRGDPALHQYIAKVYWDELNYNQARHHYIHSQDGKNCAKLLIEFQMTKGFKCEIDLFVAQAVLQFLCLRNQITASQTFTTY-----------TENHPTIKKAEPPYLLPLLNFLWFLLQALETKKLQ---------TFAVLCEQYQKSLERDPCYLQYLDKIGQLFFGLKPPQPKKSGGLFGSLIDNFLEGLEDGSD 691 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7461.18649.1 >prot_Ecto-sp13_S_contig7461.18649.1 ID=prot_Ecto-sp13_S_contig7461.18649.1|Name=mRNA_Ecto-sp13_S_contig7461.18649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp MTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFback to top mRNA from alignment at Ecto-sp13_S_contig7461:18..5107+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7461.18649.1 ID=mRNA_Ecto-sp13_S_contig7461.18649.1|Name=mRNA_Ecto-sp13_S_contig7461.18649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5090bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7461:18..5107+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7461:18..5107+ >mRNA_Ecto-sp13_S_contig7461.18649.1 ID=mRNA_Ecto-sp13_S_contig7461.18649.1|Name=mRNA_Ecto-sp13_S_contig7461.18649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7461:18..5107+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |