prot_Ecto-sp13_S_contig7461.18649.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7461.18649.1
Unique Nameprot_Ecto-sp13_S_contig7461.18649.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length210
Homology
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: D7G636_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G636_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 4.720e-139
Identity = 202/208 (97.12%), Postives = 205/208 (98.56%), Query Frame = 0
Query:    1 MTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMGMLGQLMGG 208
            MTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEY+ALVKQW+AKGYPGETDLFICRAVLHTLSYDRTEDAG LLDACASWVLGEDAASSPGSE SSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDV+LDDLLNRIGDVHF IKPPQPGGLMGMLGQLMGG
Sbjct:  103 MTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYSALVKQWAAKGYPGETDLFICRAVLHTLSYDRTEDAGVLLDACASWVLGEDAASSPGSEASSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVNLDDLLNRIGDVHFGIKPPQPGGLMGMLGQLMGG 310          
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: M4C6B5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6B5_HYAAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.050e-15
Identity = 59/208 (28.37%), Postives = 103/208 (49.52%), Query Frame = 0
Query:    4 GVEMSEFLKRAIRWT--RHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMGMLGQLMGGM 209
              +++ FLK A++W+  + ++     EL+L++AR+  T G+   A ++F  +  P E A  + QWS +GYP E+DL++ RAVL  LS +   DA ++ +   +                  A   ++ PL +FTRF++   +  +L           F  L+E Y  +L RD  L   ++ IG   + ++PP+ G L  +L    GG+
Sbjct:  134 SADVTVFLKNAVKWSAAKGSRKRGDPELQLLLARAYCTAGDFPHAMKHFLHAENPEEMADALFQWSTRGYPSESDLYLARAVLQLLSLENLRDANKVYEVYVA--------------KCQDAGRPVDLPLINFTRFLLLTLERDALP---------LFQMLQERYAPALARDSSLTSYVDIIGQKFYGLQPPRSG-LSSLLEMFSGGV 317          
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: H3GH30_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH30_PHYRM)

HSP 1 Score: 70.1 bits (170), Expect = 9.480e-11
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 0
Query:    4 GVEMSEFLKRAIRWT--RHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVV 139
             V+++  LK A++W+     +     EL+L++AR+  T+G+   A ++F  +  P E A +V +WS KGYP E+DL++ RAVL  LS +   DA ++ +                ++  S  + V + PL++FTRF++
Sbjct:  132 SVDLALVLKNAVKWSAAHGARKRGDPELQLLLARAYRTSGDFTHAMKHFLHAENPQELAEVVFEWSTKGYPSESDLYLARAVLQLLSLENLRDANKVYEVYV-------------AKCQSAGRPV-DLPLFNFTRFLL 255          
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: M4C6B6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C6B6_HYAAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.020e-7
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = 0
Query:    4 GVEMSEFLKRAIRWT--RHTKTEAAFELRLIMARSAVTTGNLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVL 84
              +++ FLK A++W+  + ++     EL+L++AR+  T G+   A ++F  +  P E A  + QWS +GYP E+DL++ RAVL
Sbjct:  218 SADVTVFLKNAVKWSAAKGSRKRGDPELQLLLARAYCTAGDFPHAMKHFLHAENPEEMADALFQWSTRGYPSESDLYLARAVL 300          
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: UPI0009011AAF (Golgi to ER traffic protein 4 homolog n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009011AAF)

HSP 1 Score: 59.7 bits (143), Expect = 4.590e-7
Identity = 54/207 (26.09%), Postives = 93/207 (44.93%), Query Frame = 0
Query:    8 SEFLKRAIRWTRHTKTE--AAFELRLIMARSAVTTG---NLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQP-GGLMGMLGQLMGG 208
            + FLK A++W+         + EL  ++A    +     ++ + + +F     P ++ + V  +  K YPGE DL I RAVL  LS     DA  ++D                 +VSS      E  L  F  +++   Q         ++    FNKLR VY+ S+ER+   ++LL+ I +  + ++   P  G+ G + ++MGG
Sbjct:  141 TSFLKAALKWSHEFGAHKYGSPELHDMLAEYIFSESPEVDMGKVSFHFVRGKNPKKFTSTVINFMGKCYPGEEDLAIARAVLMYLSLGNLRDANYIMDELK-------------KQVSSKELEFPELELMQFISYLLLTLQ---------RDAIPLFNKLRVVYKLSIEREPTFNELLDEIAEKFYGLRRQSPLQGMFGDIFKMMGG 325          
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Match: A0A161Y7Z6_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y7Z6_DAUCS)

HSP 1 Score: 57.8 bits (138), Expect = 2.080e-6
Identity = 53/207 (25.60%), Postives = 96/207 (46.38%), Query Frame = 0
Query:    8 SEFLKRAIRWTRH--TKTEAAFELRLIMARSAVTTG---NLAEAARYFAVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLDACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGSPSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQP-GGLMGMLGQLMGG 208
            S FLK AIRW+     +   + E+  ++A    +     ++A+ + +F       ++A+ +  ++ K YPGE D+ I RAVL  LS     DA +L+D                 ++         S L  F  +++E  Q  +L           FN+LR+ Y +SL+RD  L++LL+ + +  + ++   P   + G + ++MGG
Sbjct:  138 SSFLKAAIRWSTEFGAQRNGSPEIHDMLAEYIYSESPEVDMAKVSFHFVRGKDLEKFASTLVNFTGKCYPGEDDMAIARAVLLYLSLGNLGDANDLVDEVQ-------------KQMQDKELDYPHSELIEFINYLLETLQRDALP---------LFNRLRQTYASSLDRDPALNELLDVVAEKFYGVRRRNPMQDMFGDIFKMMGG 322          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7461.18649.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G636_ECTSI4.720e-13997.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
M4C6B5_HYAAE1.050e-1528.37Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3GH30_PHYRM9.480e-1131.16Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
M4C6B6_HYAAE3.020e-736.14Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
UPI0009011AAF4.590e-726.09Golgi to ER traffic protein 4 homolog n=3 Tax=Ipom... [more]
A0A161Y7Z6_DAUCS2.080e-625.60Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 2..207
e-value: 7.8E-35
score: 122.6
IPR007317Golgi to ER traffic protein 4PFAMPF04190DUF410coord: 6..206
e-value: 2.3E-39
score: 135.8
IPR007317Golgi to ER traffic protein 4PANTHERPTHR12875UNCHARACTERIZEDcoord: 7..209
NoneNo IPR availablePANTHERPTHR12875:SF0GOLGI TO ER TRAFFIC PROTEIN 4 HOMOLOGcoord: 7..209

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7461contigEcto-sp13_S_contig7461:129..3784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7461.18649.1mRNA_Ecto-sp13_S_contig7461.18649.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7461 18..5107 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7461.18649.1 ID=prot_Ecto-sp13_S_contig7461.18649.1|Name=mRNA_Ecto-sp13_S_contig7461.18649.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MTPGVEMSEFLKRAIRWTRHTKTEAAFELRLIMARSAVTTGNLAEAARYF
AVSGCPTEYAALVKQWSAKGYPGETDLFICRAVLHTLSYDRTEDAGELLD
ACASWVLGEDAASSPGSEVSSGAQAVLESPLWHFTRFVVELCQVKSLAGS
PSQEMAAAFNKLREVYRASLERDVHLDDLLNRIGDVHFDIKPPQPGGLMG
MLGQLMGGM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR007317GET4