prot_Ecto-sp13_S_contig7456.18642.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7456.18642.1
Unique Nameprot_Ecto-sp13_S_contig7456.18642.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length530
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI)

HSP 1 Score: 657 bits (1694), Expect = 2.130e-229
Identity = 476/529 (89.98%), Postives = 478/529 (90.36%), Query Frame = 0 
Query:    1 QVHASHDRKRHTSEAAAPAKRSSRGEXXXXXXXXXXXXXXXXPAGGMAGGVGGMTGRAEGQAGWTASSDKKHSTRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPSSXXXXXXXXXXXXXTAAGRTVKPPPSGAPAPTLPPEHGGGDRGAGVEGVVERPSSHTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSAAARSGVDGMPVAPSAAAAAGAVATGRAPVAMGGAAXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGGVSGPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCVRIRANVG 529
            +VHASHDRKRHTSEAAAPAKRSSRGEXXXXXXXXXXXXXXXXPAGGMAGGVGGMTGR EGQAGWT SSD KHSTR G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASP  XXXXXXXXXXXXX                      HGGGDRGAGV  VVERPSS+TMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSA AR G DGMPVAPSAAA A A   GRA        XXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGGVS PASAXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SCVRIRANVG
Sbjct:  153 EVHASHDRKRHTSEAAAPAKRSSRGEXXXXXXXXXXXXXXXXPAGGMAGGVGGMTGRVEGQAGWTTSSDTKHSTRTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XHGGGDRGAGVGVVVERPSSNTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGGVSAPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSCVRIRANVG 680
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BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.400e-24
Identity = 101/365 (27.67%), Postives = 140/365 (38.36%), Query Frame = 0 
Query:  117 NKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPSSXXXXXXXXXXXXXTAAGRTVKPPPSGAPAPTLPPEHGGGDRGAGVEGVVERPSSHTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSAAARSGVDGMPVAPSAAAAAGAVATGRAPVAMGGAAXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPP-FFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPAT 480
            +KRRLERNAREQKRSLKISQRI++LR +L Q G+ VK SKS VL E T+ I  L RQ    EAERA +L L+    A                                         GG  +G                                                                                                                     A   ++Y+ +F    +P+A+ ++NGN+V+CN+R+   TGFR++E L +T+F+LVAD +LQ +F++IS  LS     G PP    +P K+ +G P GGV+ +S V DD +RP  F I +  +P T
Sbjct:   19 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSA-----------------------------------------GGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------XASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRP-GGVLSVSLVRDDIMRPRFFAISMSPAPTT 268
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BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.110e-21
Identity = 98/365 (26.85%), Postives = 139/365 (38.08%), Query Frame = 0 
Query:  115 VQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPSSXXXXXXXXXXXXXTAAGRTVKPPPSGAPAPTLPPEHGGGDRGAGVEGVVERPSSHTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSAAARSGVDGMPVAPSAAAAAGAVATGRAPVAMGGAAXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTG-----NPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICI 474
            V +KRRLERNAREQ+RSLKISQ+I++LR +L Q GV VK+SKS +L EAT  I  LQR+ A  E ER  +LQL                                                       V+G+    S+                                                                                                         A   ++Y+ +F    +P+A+ +VNGN+VDCN R+   TG+R+EE L +T+F+LVAD FLQ +F++IS +L++ G              +P K+ +G P GGV+ I+ V D+ LRP  F I +
Sbjct:   64 VVDKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQL-------------------------------------------------------VQGLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------XXXXXXASVGMDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQP-GGVLSIALVRDELLRPRFFAISL 304
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BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.110e-7
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 0 
Query:  116 QNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPS 197
            + KRR ERN REQKRSLKIS++I++L  +L+  G  VKA+KS++L EA  YI HLQ   A+ E ER++ + +L  + A+  S
Sbjct:   99 EKKRRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNILTTNGASGIS 180
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BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7R9W9V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9V5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.560e-5
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 0 
Query:  115 VQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDV-KASKSAVLSEATDYIAHLQRQHAQSEAERARILQ 186
            + + +R ERNARE++RS +IS++I +LR +LS  GV V K +KSAVL+EA +YI  LQ+   +SE +R  ++Q
Sbjct:   37 LDDSKREERNAREKERSFRISRQINELRNLLSSGGVIVPKGTKSAVLTEAANYIRMLQQHQYRSEIDRQHLVQ 109
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BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7R9U539_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U539_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.670e-5
Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = 0 
Query:  116 QNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLL 188
            + +RR ERN REQ+RSLKIS++I++L  +L+  G +VK +KSA+L++A  YI +LQ   A+ E ER + + +L
Sbjct:  154 EKRRRKERNQREQRRSLKISKKIDELHEILTGSGRNVKPNKSAILNDAHQYIQYLQSTMARKEFERNQFVDVL 226
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BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.460e-5
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 0 
Query:  117 NKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEA 179
            +KRRL+RNAREQ+RS KI+ +I+ LR++L   G  VK++KS+VLSE  DYI  LQ++    EA
Sbjct:  460 DKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEA 522
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LJ51_ECTSI2.130e-22989.98N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECT... [more]
A0A835YRU1_9STRA5.400e-2427.67BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z815_9STRA3.110e-2126.85BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S1XXW7_9STRA6.110e-748.78Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9W9V5_9STRA1.560e-547.95Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7R9U539_9STRA3.670e-546.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2CTA7_9STRA4.460e-553.97Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 160..180
NoneNo IPR availableCOILSCoilCoilcoord: 118..138
NoneNo IPR availableGENE3D3.30.450.20coord: 360..436
e-value: 4.6E-6
score: 28.5
NoneNo IPR availablePANTHERPTHR19290BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATEDcoord: 7..200
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 124..176
e-value: 1.7E-9
score: 47.6
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 119..171
e-value: 1.6E-10
score: 40.8
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 118..170
score: 13.16
IPR000014PAS domainSMARTSM00091pas_2coord: 362..428
e-value: 0.0073
score: 25.5
IPR000014PAS domainTIGRFAMTIGR00229TIGR00229coord: 363..428
e-value: 6.0E-7
score: 27.6
IPR000014PAS domainPROSITEPS50112PAScoord: 360..403
score: 10.103
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3D4.10.280.10coord: 111..196
e-value: 2.2E-12
score: 48.7
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 117..185
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 357..465

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7456contigEcto-sp13_S_contig7456:3..2164 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7456.18642.1mRNA_Ecto-sp13_S_contig7456.18642.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7456 3..2164 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7456.18642.1 ID=prot_Ecto-sp13_S_contig7456.18642.1|Name=mRNA_Ecto-sp13_S_contig7456.18642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=530bp
QVHASHDRKRHTSEAAAPAKRSSRGEKSGGGSSSKSRQKHHHPAGGMAGG
VGGMTGRAEGQAGWTASSDKKHSTRAGGGGDGADGGTTMKASKTSSSSGG
SGGGNGGSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGV
DVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPSSAV
AVAAAAAAGAGTAAGRTVKPPPSGAPAPTLPPEHGGGDRGAGVEGVVERP
SSHTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGF
PSLSAAARSGVDGMPVAPSAAAAAGAVATGRAPVAMGGAAGGTGSASGAA
NLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKE
EALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNP
GGGVVQISAVHDDQLRPMHFCICILDSPATGGVSGPASAAAAAAAVAGTA
PGGTVGVGSGGGSGGSGSGSCVRIRANVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR000014PAS
IPR036638HLH_DNA-bd_sf
IPR035965PAS-like_dom_sf