mRNA_Ecto-sp13_S_contig7456.18642.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: D8LJ51_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ51_ECTSI) HSP 1 Score: 657 bits (1694), Expect = 2.130e-229 Identity = 476/529 (89.98%), Postives = 478/529 (90.36%), Query Frame = 1
Query: 1 QVHASHDRKRHTSEAAAPAKRSSRGEXXXXXXXXXXXXXXXXPAGGMAGGVGGMTGRAEGQAGWTASSDKKHSTRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPSSXXXXXXXXXXXXXTAAGRTVKPPPSGAPAPTLPPEHGGGDRGAGVEGVVERPSSHTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSAAARSGVDGMPVAPSAAAAAGAVATGRAPVAMGGAAXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGGVSGPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCVRIRANVG 1587
+VHASHDRKRHTSEAAAPAKRSSRGEXXXXXXXXXXXXXXXXPAGGMAGGVGGMTGR EGQAGWT SSD KHSTR G XXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASP XXXXXXXXXXXXX HGGGDRGAGV VVERPSS+TMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSA AR G DGMPVAPSAAA A A GRA XXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGGVS PASAXXXXXXXXXXXXXXXXXXXXXXXXXXXX SCVRIRANVG
Sbjct: 153 EVHASHDRKRHTSEAAAPAKRSSRGEXXXXXXXXXXXXXXXXPAGGMAGGVGGMTGRVEGQAGWTTSSDTKHSTRTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMTKAPTVQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XHGGGDRGAGVGVVVERPSSNTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSATARRGADGMPVAPSAAAGAAAXXXGRAXXXXXXXXXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPATGGVSAPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSCVRIRANVG 680
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A835YRU1_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRU1_9STRA) HSP 1 Score: 111 bits (278), Expect = 5.400e-24 Identity = 101/365 (27.67%), Postives = 140/365 (38.36%), Query Frame = 1
Query: 349 NKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPSSXXXXXXXXXXXXXTAAGRTVKPPPSGAPAPTLPPEHGGGDRGAGVEGVVERPSSHTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSAAARSGVDGMPVAPSAAAAAGAVATGRAPVAMGGAAXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTGNPP-FFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICILDSPAT 1440
+KRRLERNAREQKRSLKISQRI++LR +L Q G+ VK SKS VL E T+ I L RQ EAERA +L L+ A GG +G A ++Y+ +F +P+A+ ++NGN+V+CN+R+ TGFR++E L +T+F+LVAD +LQ +F++IS LS G PP +P K+ +G P GGV+ +S V DD +RP F I + +P T
Sbjct: 19 DKRRLERNAREQKRSLKISQRIDELRLLLRQSGISVKNSKSHVLQEGTNLIKLLLRQQGALEAERAHMLGLVQMLSA-----------------------------------------GGNTQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------XASVGMDYQLIFHNAAIPLAVCSINGNIVECNSRMCVATGFRRDELLLLTVFNLVADAYLQRSFALISGALSAPAAAGAPPQHVDLPCKVRDGRP-GGVLSVSLVRDDIMRPRFFAISMSPAPTT 268
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A835Z815_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z815_9STRA) HSP 1 Score: 104 bits (260), Expect = 3.110e-21 Identity = 98/365 (26.85%), Postives = 139/365 (38.08%), Query Frame = 1
Query: 343 VQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPSSXXXXXXXXXXXXXTAAGRTVKPPPSGAPAPTLPPEHGGGDRGAGVEGVVERPSSHTMLDTLLSLDDDGDMGRPTSAMTAARAMVFPPPTPPQQGEEQIVPGFPSLSAAARSGVDGMPVAPSAAAAAGAVATGRAPVAMGGAAXXXXXXXXXXNLAATARALSHVNYERVFRTLPMPMAIANVNGNLVDCNTRLTQVTGFRKEEALFMTIFDLVADPFLQHTFSMISSILSMRGVTG-----NPPFFQVPGKIFNGNPGGGVVQISAVHDDQLRPMHFCICI 1422
V +KRRLERNAREQ+RSLKISQ+I++LR +L Q GV VK+SKS +L EAT I LQR+ A E ER +LQL V+G+ S+ A ++Y+ +F +P+A+ +VNGN+VDCN R+ TG+R+EE L +T+F+LVAD FLQ +F++IS +L++ G +P K+ +G P GGV+ I+ V D+ LRP F I +
Sbjct: 64 VVDKRRLERNAREQRRSLKISQKIDELRALLRQSGVMVKSSKSNILQEATQLICALQRRQALLEGERNHLLQL-------------------------------------------------------VQGLSGSSSAQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------XXXXXXASVGMDYQLIFHNAAIPLAVGSVNGNIVDCNARMCAFTGYRREELLALTVFNLVADAFLQQSFALISGMLTVAGAAAAAAQQRGAHVDMPCKLRDGQP-GGVLSIALVRDELLRPRFFAISL 304
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7S1XXW7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW7_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 6.110e-7 Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 346 QNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLLHNSRAASPS 591
+ KRR ERN REQKRSLKIS++I++L +L+ G VKA+KS++L EA YI HLQ A+ E ER++ + +L + A+ S
Sbjct: 99 EKKRRQERNHREQKRSLKISRKIDELHEILTDSGRMVKANKSSILREAFSYIMHLQGVLARKEYERSQFVNILTTNGASGIS 180
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7R9W9V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9V5_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.560e-5 Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 343 VQNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDV-KASKSAVLSEATDYIAHLQRQHAQSEAERARILQ 558
+ + +R ERNARE++RS +IS++I +LR +LS GV V K +KSAVL+EA +YI LQ+ +SE +R ++Q
Sbjct: 37 LDDSKREERNAREKERSFRISRQINELRNLLSSGGVIVPKGTKSAVLTEAANYIRMLQQHQYRSEIDRQHLVQ 109
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7R9U539_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U539_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.670e-5 Identity = 34/73 (46.58%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 346 QNKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEAERARILQLL 564
+ +RR ERN REQ+RSLKIS++I++L +L+ G +VK +KSA+L++A YI +LQ A+ E ER + + +L
Sbjct: 154 EKRRRKERNQREQRRSLKISKKIDELHEILTGSGRNVKPNKSAILNDAHQYIQYLQSTMARKEFERNQFVDVL 226
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Match: A0A7S2CTA7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CTA7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 4.460e-5 Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 1
Query: 349 NKRRLERNAREQKRSLKISQRIEDLRRMLSQFGVDVKASKSAVLSEATDYIAHLQRQHAQSEA 537
+KRRL+RNAREQ+RS KI+ +I+ LR++L G VK++KS+VLSE DYI LQ++ EA
Sbjct: 460 DKRRLDRNAREQRRSKKITSQIDQLRQVLRAAGRPVKSNKSSVLSETADYIRDLQKKRQALEA 522 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7456.18642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7456.18642.1 >prot_Ecto-sp13_S_contig7456.18642.1 ID=prot_Ecto-sp13_S_contig7456.18642.1|Name=mRNA_Ecto-sp13_S_contig7456.18642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=530bp QVHASHDRKRHTSEAAAPAKRSSRGEKSGGGSSSKSRQKHHHPAGGMAGGback to top mRNA from alignment at Ecto-sp13_S_contig7456:3..2164+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7456.18642.1 ID=mRNA_Ecto-sp13_S_contig7456.18642.1|Name=mRNA_Ecto-sp13_S_contig7456.18642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7456:3..2164+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7456:3..2164+ >mRNA_Ecto-sp13_S_contig7456.18642.1 ID=mRNA_Ecto-sp13_S_contig7456.18642.1|Name=mRNA_Ecto-sp13_S_contig7456.18642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7456:3..2164+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |