prot_Ecto-sp13_S_contig1221.1861.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1221.1861.1
Unique Nameprot_Ecto-sp13_S_contig1221.1861.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length264
Homology
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 1.830e-142
Identity = 195/248 (78.63%), Postives = 215/248 (86.69%), Query Frame = 0
Query:   16 GFGCGGVLLCFVMVKMMVGTASAGSIRMTECPPDAPEATFRWVNEGEYLYVEGAGSCVTLPDIYNAVENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 263
            G    G+LL  ++    V T SAGSIR+TECP DAPEATF W N+G+YLYVEG GSCVTLPDIYN V+NPPLTYHTVDGDESDTETGIWL+TK+++M  GTTLLLHDDLGC ELRI SSSTNA HL  FG YIS+L TK+TSWSV N+ PD GAYDG N RS++SAVSEMTHPSDTCDGAADDDAGEAR+DIINS+V YLGYQAAESYG++YKVRGYC DESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct:    9 GSAAAGLLLFLLLAGTRVQTGSAGSIRLTECPADAPEATFSWTNDGDYLYVEGDGSCVTLPDIYNGVDNPPLTYHTVDGDESDTETGIWLLTKHLYMRPGTTLLLHDDLGCTELRIASSSTNALHLNTFGGYISILNTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 256          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI)

HSP 1 Score: 266 bits (681), Expect = 6.740e-85
Identity = 132/161 (81.99%), Postives = 133/161 (82.61%), Query Frame = 0
Query:  103 IWLMTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 263
            IWLMTKNIFMESGTTLLLHDDLGCD                           LTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQA+ESYGISYKVRGYC DESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct:    3 IWLMTKNIFMESGTTLLLHDDLGCD---------------------------LTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQASESYGISYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 136          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5L834_9PHAE (MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L834_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 5.260e-65
Identity = 94/110 (85.45%), Postives = 103/110 (93.64%), Query Frame = 0
Query:  154 KLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 263
            ++TSWSV ++ PD GAYDG N RS+ISAVSEMTHPSDTCDGAADDDAGEAR+DIINS+V YLGYQAAESYG++YKVRGYC DESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct:    8 QVTSWSVSDKEPDAGAYDGSNPRSYISAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCADESNPEVFDRVNVRGDIRFSDIHHNWFGQ 117          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5KKL2_9PHAE (MEP23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL2_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 4.680e-64
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
Query:  106 MTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD 206
            MTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD
Sbjct:    1 MTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD 101          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 3.190e-53
Identity = 113/270 (41.85%), Postives = 160/270 (59.26%), Query Frame = 0
Query:    6 MDRRRRAAAGGFGCGGV-LLCFVMVKMMVGTASAGS-IRMTECPPDAPEATFRWVNEGEYLYVEGA-----GSCVTLPDIYN--AVENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLH--DDLG-CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 262
            M+ RRR+A   FG   + LL          TAS    I   +C  D  E + R+    + LY+E A     G C TL  ++   A + P        GD S+T+TG WL+T+ +++E G TL ++  D+ G  DELR++S+S    +LRA+G  +  + TK+ SW     +PD    DG   RS+ISAVSE+ T   ++C+G A +  GEARMDI NSE+ YLG+Q +ESYG+++KVRG+C D+SNPE+FD VNV G++  SDIHH  FG
Sbjct:    1 MEFRRRSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDI-EVSIRYAGNTKRLYLESADGETRGGCATLGQVWESRAGKGPLYAVDPDSGDVSETQTGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDTYINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDG---RSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFG 266          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.340e-52
Identity = 120/274 (43.80%), Postives = 159/274 (58.03%), Query Frame = 0
Query:    9 RRRAAAGGFGCGGVLLCFVMVKMMVGTASAGSIRMTECPPDAPEA--TFRWVNEGEYLYVEGAGSCVTLPDIY-----NAVENP------------PLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSE-MTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 262
            RRRAAA              V ++   A+AG   + E      EA  + R+  E + LY+EG G C+T  DIY     N  E+             P+T  T DG+ SD ETG WL T ++++  G  L LH + G   +R+ S S     LRA G ++SLL T+L+SW V + A     Y     RS+++A+SE +  P  TC G A +DAGEAR DIINSEV +LG+   E+YGI++KVRG+CVD SN ++FDRVNVRGDIRFSDIHHN+FG
Sbjct:    5 RRRAAA--------------VGLVAAAAAAGLATLGEACDYTLEAKASLRFNIETDRLYLEGGG-CITPSDIYLAKLTNVTEDDGNTLTAEEAAAIPITPITKDGEFSDAETGYWLFTSDVYIYDGVKLELHAESGTTGMRLKSDS-KVIELRAHGGWLSLLNTELSSWDV-DEADYASNYSA--PRSYVTAISEVLDSPPQTCVGHAKNDAGEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFG 259          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 6.020e-52
Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 0
Query:   56 RWVNEGEYLYVEGA-----GSCVTLPDIYNA-VENPPLTYHTVD---GDESDTETGIWLMTKNIFMESGTTLLLHDDLG---CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 262
            R+  E   LY+E A     G CVTL  I+   V+  PL  + VD   GD S + TG WL+T+ +++E G TL +H        DELR++S+S    HLRA+G  +  L TK+ +W     APD    DG   RS+ISAVSE+ T    TC+G A ++ GEARMDI NSE+AYLGY   E+YG+++KVRG+CVD+ NPE+FD VNV G+I  SDIHHN FG
Sbjct:   19 RYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPL--YAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDG---RSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFG 233          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.550e-51
Identity = 115/270 (42.59%), Postives = 159/270 (58.89%), Query Frame = 0
Query:    6 MDRRRRAAAGGFGCGGV-LLCFVMVKMMVGTASAGS-IRMTECPPDAPEATFRWVNEGEYLYVEGA-----GSCVTLPDIYN--AVENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLH--DDLG-CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 262
            M+ RR++A   FG   + LL          TAS    I   +C  D  E + R+    + LY+E A     G C TL  I+   A + P        GD S+TETG WL+T+ +++E G TL ++  D+ G  DELR++S+S    +LRA G  +  + TK+ SW     +PD    DG   RS+ISAVSE+ T   +TC+G A +  GEARMDI NSE+ YLG+Q +ESYG+++KVRG+C D+SNPE+FD VNV G++  SDIHH  FG
Sbjct:    1 MEFRRKSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDI-EVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDG---RSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFG 266          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.310e-50
Identity = 107/254 (42.13%), Postives = 151/254 (59.45%), Query Frame = 0
Query:   23 LLCFVMVKMMVGTASAGS-IRMTECPPDAPEATFRWVNEGEYLYVEGA-----GSCVTLPDIY-NAVENPPLTYHTVD---GDESDTETGIWLMTKNIFMESGTTLLLH---DDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 262
            LL   M      TAS    I   +C  D    + R+ +  + LY+E A     G CVTL  I+ N     PL  + VD   G+ES+ ETG WL+T+ +++E G TL ++   +    DELR++S++    +LRA G  +  + TK+ SW     +PD    DG   RS+ISA+SE+ T   +TC+G A +  GEARMDI NSE+ YLG+Q +ESYG+++KVRG+C D+SNP +FD VNV G++  SDIHH  FG
Sbjct:   18 LLAATMRAAAADTASPNDPISKPDCDSDIA-VSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGKAPL--YAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFG 265          
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.200e-48
Identity = 100/220 (45.45%), Postives = 137/220 (62.27%), Query Frame = 0
Query:   54 TFRWVNEGEYLYVEGA-----GSCVTLPDIYNAV--ENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLHDDLG---CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 262
            + R+ +  E LY+E A     G CVTL  I+     E P     +  GD SD+ TG WL+T+ +F+E G TL +H        DELR++S+S    +LRA G  +  L TK+ +W      PD    DG   RS++SAVSE+ T  S TC+G A ++ GEARMDI +SE+ YLGY  +ESYG+++KVRG+CVD+SN ++F+ VNV G+I  SDIHHN FG
Sbjct:   43 SIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDG---RSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFG 259          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1G1_ECTSI1.830e-14278.63Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G2_ECTSI6.740e-8581.99Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L834_9PHAE5.260e-6585.45MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KKL2_9PHAE4.680e-64100.00MEP23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D8LHA2_ECTSI3.190e-5341.85Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5K9I9_9PHAE1.340e-5243.80MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
Q7XAJ8_9PHAE6.020e-5248.18Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
D7FXE4_ECTSI2.550e-5142.59Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE5.310e-5042.13MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAJ7_9PHAE1.200e-4845.45Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012334Pectin lyase foldGENE3D2.160.20.10coord: 27..263
e-value: 5.6E-35
score: 122.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 39..263
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1221contigEcto-sp13_S_contig1221:892..5319 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1221.1861.1mRNA_Ecto-sp13_S_contig1221.1861.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1221 892..5341 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1221.1861.1 ID=prot_Ecto-sp13_S_contig1221.1861.1|Name=mRNA_Ecto-sp13_S_contig1221.1861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp
MRSSKMDRRRRAAAGGFGCGGVLLCFVMVKMMVGTASAGSIRMTECPPDA
PEATFRWVNEGEYLYVEGAGSCVTLPDIYNAVENPPLTYHTVDGDESDTE
TGIWLMTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISL
LRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDA
GEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGD
IRFSDIHHNWFGQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold