mRNA_Ecto-sp13_S_contig1221.1861.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI) HSP 1 Score: 418 bits (1074), Expect = 2.410e-142 Identity = 195/248 (78.63%), Postives = 215/248 (86.69%), Query Frame = 2
Query: 68 GFGCGGVLLCFVMVKMMVGTASAGSIRMTECPPDAPEATFRWVNEGEYLYVEGAGSCVTLPDIYNAVENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 811
G G+LL ++ V T SAGSIR+TECP DAPEATF W N+G+YLYVEG GSCVTLPDIYN V+NPPLTYHTVDGDESDTETGIWL+TK+++M GTTLLLHDDLGC ELRI SSSTNA HL FG YIS+L TK+TSWSV N+ PD GAYDG N RS++SAVSEMTHPSDTCDGAADDDAGEAR+DIINS+V YLGYQAAESYG++YKVRGYC DESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct: 9 GSAAAGLLLFLLLAGTRVQTGSAGSIRLTECPADAPEATFSWTNDGDYLYVEGDGSCVTLPDIYNGVDNPPLTYHTVDGDESDTETGIWLLTKHLYMRPGTTLLLHDDLGCTELRIASSSTNALHLNTFGGYISILNTKVTSWSVSNKEPDAGAYDGSNPRSYMSAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 256
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI) HSP 1 Score: 266 bits (681), Expect = 8.700e-85 Identity = 132/161 (81.99%), Postives = 133/161 (82.61%), Query Frame = 2
Query: 329 IWLMTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 811
IWLMTKNIFMESGTTLLLHDDLGCD LTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQA+ESYGISYKVRGYC DESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct: 3 IWLMTKNIFMESGTTLLLHDDLGCD---------------------------LTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQASESYGISYKVRGYCTDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 136
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5L834_9PHAE (MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L834_9PHAE) HSP 1 Score: 207 bits (527), Expect = 6.680e-65 Identity = 94/110 (85.45%), Postives = 103/110 (93.64%), Query Frame = 2
Query: 482 KLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFGQ 811
++TSWSV ++ PD GAYDG N RS+ISAVSEMTHPSDTCDGAADDDAGEAR+DIINS+V YLGYQAAESYG++YKVRGYC DESNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct: 8 QVTSWSVSDKEPDAGAYDGSNPRSYISAVSEMTHPSDTCDGAADDDAGEARLDIINSDVGYLGYQAAESYGLTYKVRGYCADESNPEVFDRVNVRGDIRFSDIHHNWFGQ 117
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5KKL2_9PHAE (MEP23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL2_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.940e-64 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 2
Query: 338 MTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD 640
MTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD
Sbjct: 1 MTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEMTHPSDTCDGAADDDAGEARMD 101
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI) HSP 1 Score: 181 bits (459), Expect = 2.250e-52 Identity = 113/270 (41.85%), Postives = 160/270 (59.26%), Query Frame = 2
Query: 38 MDRRRRAAAGGFGCGGV-LLCFVMVKMMVGTASAGS-IRMTECPPDAPEATFRWVNEGEYLYVEGA-----GSCVTLPDIYN--AVENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLH--DDLG-CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 808
M+ RRR+A FG + LL TAS I +C D E + R+ + LY+E A G C TL ++ A + P GD S+T+TG WL+T+ +++E G TL ++ D+ G DELR++S+S +LRA+G + + TK+ SW +PD DG RS+ISAVSE+ T ++C+G A + GEARMDI NSE+ YLG+Q +ESYG+++KVRG+C D+SNPE+FD VNV G++ SDIHH FG
Sbjct: 1 MEFRRRSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDI-EVSIRYAGNTKRLYLESADGETRGGCATLGQVWESRAGKGPLYAVDPDSGDVSETQTGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDTYINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDG---RSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFG 266
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE) HSP 1 Score: 186 bits (473), Expect = 3.310e-52 Identity = 114/254 (44.88%), Postives = 153/254 (60.24%), Query Frame = 2
Query: 107 VKMMVGTASAGSIRMTECPPDAPEA--TFRWVNEGEYLYVEGAGSCVTLPDIY-----NAVENP------------PLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLHDDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSE-MTHPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 808
V ++ A+AG + E EA + R+ E + LY+EG G C+T DIY N E+ P+T T DG+ SD ETG WL T ++++ G L LH + G +R+ S S LRA G ++SLL T+L+SW V + A Y RS+++A+SE + P TC G A +DAGEAR DIINSEV +LG+ E+YGI++KVRG+CVD SN ++FDRVNVRGDIRFSDIHHN+FG
Sbjct: 11 VGLVAAAAAAGLATLGEACDYTLEAKASLRFNIETDRLYLEGGG-CITPSDIYLAKLTNVTEDDGNTLTAEEAAAIPITPITKDGEFSDAETGYWLFTSDVYIYDGVKLELHAESGTTGMRLKSDS-KVIELRAHGGWLSLLNTELSSWDV-DEADYASNYSA--PRSYVTAISEVLDSPPQTCVGHAKNDAGEARFDIINSEVHHLGHYGTEAYGITWKVRGFCVDLSNEDLFDRVNVRGDIRFSDIHHNYFG 259
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 185 bits (469), Expect = 7.580e-52 Identity = 106/220 (48.18%), Postives = 139/220 (63.18%), Query Frame = 2
Query: 188 RWVNEGEYLYVEGA-----GSCVTLPDIYNA-VENPPLTYHTVD---GDESDTETGIWLMTKNIFMESGTTLLLHDDLG---CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 808
R+ E LY+E A G CVTL I+ V+ PL + VD GD S + TG WL+T+ +++E G TL +H DELR++S+S HLRA+G + L TK+ +W APD DG RS+ISAVSE+ T TC+G A ++ GEARMDI NSE+AYLGY E+YG+++KVRG+CVD+ NPE+FD VNV G+I SDIHHN FG
Sbjct: 19 RYNAESARLYIESANGRTRGGCVTLEQIWEQQVDGSPL--YAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNAPDQDESDG---RSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFG 233
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 182 bits (462), Expect = 1.730e-50 Identity = 115/270 (42.59%), Postives = 159/270 (58.89%), Query Frame = 2
Query: 38 MDRRRRAAAGGFGCGGV-LLCFVMVKMMVGTASAGS-IRMTECPPDAPEATFRWVNEGEYLYVEGA-----GSCVTLPDIYN--AVENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLH--DDLG-CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 808
M+ RR++A FG + LL TAS I +C D E + R+ + LY+E A G C TL I+ A + P GD S+TETG WL+T+ +++E G TL ++ D+ G DELR++S+S +LRA G + + TK+ SW +PD DG RS+ISAVSE+ T +TC+G A + GEARMDI NSE+ YLG+Q +ESYG+++KVRG+C D+SNPE+FD VNV G++ SDIHH FG
Sbjct: 1 MEFRRKSATSSFGLALLGLLASTTPAAAADTASPNDPISKPDCDSDI-EVSIRYAGTTKRLYLESADGETRGGCATLGQIWESRAGKAPLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDG---RSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFG 266
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 176 bits (447), Expect = 6.660e-50 Identity = 107/254 (42.13%), Postives = 151/254 (59.45%), Query Frame = 2
Query: 89 LLCFVMVKMMVGTASAGS-IRMTECPPDAPEATFRWVNEGEYLYVEGA-----GSCVTLPDIY-NAVENPPLTYHTVD---GDESDTETGIWLMTKNIFMESGTTLLLH---DDLGCDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 808
LL M TAS I +C D + R+ + + LY+E A G CVTL I+ N PL + VD G+ES+ ETG WL+T+ +++E G TL ++ + DELR++S++ +LRA G + + TK+ SW +PD DG RS+ISA+SE+ T +TC+G A + GEARMDI NSE+ YLG+Q +ESYG+++KVRG+C D+SNP +FD VNV G++ SDIHH FG
Sbjct: 18 LLAATMRAAAADTASPNDPISKPDCDSDIA-VSIRYASSTKRLYLESADGETRGGCVTLGQIWENRAGKAPL--YAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDG---RSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFG 265
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 177 bits (448), Expect = 1.500e-48 Identity = 100/220 (45.45%), Postives = 137/220 (62.27%), Query Frame = 2
Query: 182 TFRWVNEGEYLYVEGA-----GSCVTLPDIYNAV--ENPPLTYHTVDGDESDTETGIWLMTKNIFMESGTTLLLHDDLG---CDELRIISSSTNARHLRAFGAYISLLRTKLTSWSVGNRAPDNGAYDGLNARSFISAVSEM-THPSDTCDGAADDDAGEARMDIINSEVAYLGYQAAESYGISYKVRGYCVDESNPEVFDRVNVRGDIRFSDIHHNWFG 808
+ R+ + E LY+E A G CVTL I+ E P + GD SD+ TG WL+T+ +F+E G TL +H DELR++S+S +LRA G + L TK+ +W PD DG RS++SAVSE+ T S TC+G A ++ GEARMDI +SE+ YLGY +ESYG+++KVRG+CVD+SN ++F+ VNV G+I SDIHHN FG
Sbjct: 43 SIRYSSVYERLYLESADSKTRGGCVTLEQIWEHQRGEAPLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDG---RSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFG 259 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1221.1861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1221.1861.1 >prot_Ecto-sp13_S_contig1221.1861.1 ID=prot_Ecto-sp13_S_contig1221.1861.1|Name=mRNA_Ecto-sp13_S_contig1221.1861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp MRSSKMDRRRRAAAGGFGCGGVLLCFVMVKMMVGTASAGSIRMTECPPDAback to top mRNA from alignment at Ecto-sp13_S_contig1221:892..5341- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1221.1861.1 ID=mRNA_Ecto-sp13_S_contig1221.1861.1|Name=mRNA_Ecto-sp13_S_contig1221.1861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1221:892..5341- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1221:892..5341- >mRNA_Ecto-sp13_S_contig1221.1861.1 ID=mRNA_Ecto-sp13_S_contig1221.1861.1|Name=mRNA_Ecto-sp13_S_contig1221.1861.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1221:892..5341- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |