mRNA_Ecto-sp13_S_contig7427.18608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7427.18608.1
Unique NamemRNA_Ecto-sp13_S_contig7427.18608.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI)

HSP 1 Score: 560 bits (1442), Expect = 6.870e-188
Identity = 275/285 (96.49%), Postives = 282/285 (98.95%), Query Frame = 1
Query:   22 RKPVSPSKHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVSQKGQAKKKGDQTEGAA 876
            RKP  PS+HITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQ+GYSPADLTSPLIEYLDQEGFEMDTL+DAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIP+VS+KG+AKKKG+QTE AA
Sbjct:  174 RKPFGPSRHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQLGYSPADLTSPLIEYLDQEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPDVSKKGKAKKKGEQTEAAA 458          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE)

HSP 1 Score: 509 bits (1311), Expect = 5.690e-168
Identity = 251/257 (97.67%), Postives = 255/257 (99.22%), Query Frame = 1
Query:  121 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVSQKGQAKKKGDQTEGAAAATGG 891
            MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQ+GYSPADLTSPLIEYLDQEGFEMDTL+DAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVS KG+AKKKG+QTE AAAATGG
Sbjct:    1 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQLGYSPADLTSPLIEYLDQEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVSNKGKAKKKGEQTEAAAAATGG 257          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A835YIS2_9STRA (Toprim domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS2_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.550e-53
Identity = 107/251 (42.63%), Postives = 146/251 (58.17%), Query Frame = 1
Query:   49 ITDETLDLIRASTSITEVIGQHVEMKPAGR-GMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADE-KARREA----RERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGR----VDRFRGRLVVPIRDHRGLVIGFGARDL 771
            I+D +L+ +R +  ++ VIG+HV++  +G   M GCCPFH+D+TPS SVDD++G YHCFGCGA GDVI F+M+ + L F      LA + G+ L +E    G GG   D ++  +A R+A    R+RL   LQ+AA+FY R L     AG ARAH+  RG+SP T + FQ+GYSPA                    + AGL        Y  + +   G     +DRFRGRL+VPIRD RG V+ FG R+L
Sbjct:    5 ISDHSLEALRRTARLSHVIGEHVKLTSSGHTSMKGCCPFHDDKTPSLSVDDAKGLYHCFGCGAGGDVIKFVMETERLSFAAAAKTLAEQHGVQLTYEG---GGGGYSADMSEAAQAARDAKLAQRDRLLRALQLAAEFYARSLSTARTAGAARAHLASRGVSPATALRFQLGYSPAXXXXXXXXXXXXXXXXXXXXVQAGLA-------YNNTASGGGGGGAPLLDRFRGRLIVPIRDARGAVVAFGGREL 245          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A2T0AW07_9THEO (DNA primase n=1 Tax=Moorella humiferrea TaxID=676965 RepID=A0A2T0AW07_9THEO)

HSP 1 Score: 188 bits (478), Expect = 1.060e-51
Identity = 106/244 (43.44%), Postives = 146/244 (59.84%), Query Frame = 1
Query:   52 TDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
            + E ++ ++    I EVI  +V +K +GR  VG CPFH+++TPSF+V   +  ++CFGCG  GDVI FLM+ DGL F E V  LA  AGI L           G  +T   + +RE +ERL  +  +AA FY R L+  PAA  AR +++ RG+   T   F++GY+P   T+ LI+YL ++GF +D ++ AGL         RPS     G VDRFRGRL+ PI+D RG VIGFG R L+D Q
Sbjct:    6 SQEVIEEVKERVDIVEVIAGYVRLKKSGRNYVGLCPFHKEKTPSFTVSPDKQMFYCFGCGVGGDVIAFLMKQDGLSFPEAVKTLAARAGIDLA----------GVLETPAARRQREWKERLYQLGAVAASFYYRLLMRHPAAAPARRYLMMRGVKGETARLFELGYAPETGTA-LIDYLRRQGFTLDDIVHAGLC------LSRPSG----GAVDRFRGRLMFPIKDARGRVIGFGGRTLNDGQ 228          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: UPI00137B53E7 (DNA primase n=1 Tax=Moorella sp. Hama-1 TaxID=2138101 RepID=UPI00137B53E7)

HSP 1 Score: 182 bits (461), Expect = 3.410e-49
Identity = 102/251 (40.64%), Postives = 142/251 (56.57%), Query Frame = 1
Query:   31 VSPSKHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
            VS +     + +  ++    I E+IG +V++K  G   VG CPFH ++TPSF+V   +  ++CFGCGA GDV+TFLM+ +GL F E +  LA  AG+ L           GK +T   + +RE RERL  +  +AA FY R L   PA   AR+++  RGI   T   F++GY+P D T  L+ YL ++GF  + +  AGL         RP     RG +DRFRGRL+ PI+D R  VIGFG R L + Q
Sbjct:   10 VSVTTACNQDVIHEVKERVDIVEIIGGYVQLKKRGHSYVGLCPFHNEKTPSFTVSPEKQVFYCFGCGAGGDVLTFLMKREGLSFPEALAALAARAGVELA----------GKEETPAARRQREQRERLYRLGAVAASFYYRILARHPAGAAARSYLQGRGIKGATARQFELGYAP-DATGALVTYLQRQGFTPEEITQAGLS------LSRPP----RGLMDRFRGRLMFPIKDSRSRVIGFGGRVLGEGQ 239          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A4P6B3J5_9THEO (DNA primase n=5 Tax=Moorella TaxID=44260 RepID=A0A4P6B3J5_9THEO)

HSP 1 Score: 177 bits (449), Expect = 1.550e-47
Identity = 100/244 (40.98%), Postives = 139/244 (56.97%), Query Frame = 1
Query:   52 TDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
            + E +D ++    I E+IG +V +K +GR  VG CPFH+++TPSF+V   +  ++CFGCGA GDV+ FLM+ DGL F E V  LA   GI L           G  ++   K +RE +ERL  +  +AA FY R L+  P    AR ++ +RG+   T   F++GY+P D  + L++YL ++GF    +  AGL         RP      G  DRFRGRL+ PI+D RG VIGFG R LS  Q
Sbjct:    6 SQEVIDEVKDRVDIVEIIGSYVRLKKSGRNYVGLCPFHKEKTPSFTVSPDKQMFYCFGCGAGGDVLAFLMKQDGLSFPEAVKTLAARVGIDLT----------GAEESPAAKRQREWKERLYQLGAIAASFYYRLLMRHPVGAAARLYLQQRGVKGETARLFELGYAP-DTGTALVDYLRRQGFTPRDIDQAGLSAS------RPPL----GTADRFRGRLMFPIKDSRGRVIGFGGRTLSGGQ 228          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A3M1ZJ48_9BACT (DNA primase n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M1ZJ48_9BACT)

HSP 1 Score: 176 bits (447), Expect = 2.330e-47
Identity = 101/243 (41.56%), Postives = 137/243 (56.38%), Query Frame = 1
Query:   55 DETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
            DETL  IR   SI +++G++VE++ +G+   G CPFH++RTPSF V D RG YHCFGCGA GD+  F+M+++GL F E V  LA EAG+PL  + A      G     DEKA      RL  VL++AA+++   L    A   ARA++  RGI P     F +GY+P     PL  +L   G+++     AGLV             D  G  DRFR RL+ PI+D  G V+GFG R L + +
Sbjct:   22 DETLQAIRDRVSIVDLVGRYVELRRSGKNWKGLCPFHDERTPSFVVSDERGFYHCFGCGAGGDLFRFVMEMEGLRFPEAVERLAREAGVPLARDPA------GPRPDRDEKA------RLLAVLELAARYFRHQLTAGRAGEPARAYLERRGIGPELAERFGLGYAPKGW-DPLARFLKSRGWDLGVAEQAGLV----------RARDGGGVYDRFRDRLMFPIQDAAGRVVGFGGRVLGEGE 241          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: UPI000832D242 (DNA primase n=2 Tax=Alicyclobacillus TaxID=29330 RepID=UPI000832D242)

HSP 1 Score: 176 bits (447), Expect = 2.960e-47
Identity = 103/243 (42.39%), Postives = 138/243 (56.79%), Query Frame = 1
Query:   49 ITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGR-VDRFRGRLVVPIRDHRGLVIGFGARDLS 774
            I D  ++ +R    I +VI +HV+++ +GR  VG CPFH +RTPSFSV   R  YHCFGCGA G VI F+M ++GL F+E V  LA  A +PL FE  +         T     RR  RE +    ++AA+ Y   L+   A   A A++  R IS  T M+F++G++PAD  S L  +L + GF  D LIDAGLV                GR VDRFRGRL++PI D +G V+ FG R L+
Sbjct:    4 IPDSFVEEVRRRVDIVDVISEHVQLRRSGRSFVGLCPFHNERTPSFSVSPDRQLYHCFGCGAGGTVIRFVMDLEGLDFQEAVVALARRANLPLPFEPDS--------STTVSSHRRNRREAMQQAHELAAKLYNYILMNTSAGVQALAYLEGRKISRKTAMEFRLGFAPAD-GSTLYAFLRRRGFADDVLIDAGLVVPLG------------GRIVDRFRGRLMIPIEDAQGRVVAFGGRILA 225          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A5D3I2J0_MOOTH (DNA primase n=6 Tax=Moorella thermoacetica TaxID=1525 RepID=A0A5D3I2J0_MOOTH)

HSP 1 Score: 175 bits (444), Expect = 7.940e-47
Identity = 98/237 (41.35%), Postives = 138/237 (58.23%), Query Frame = 1
Query:   73 IRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
            ++    I E+IG +V++K  GR  VG CPFH ++TPSF+V   +  ++CFGCGA GDV+TFLM+ +GL F E +  LA  AG+ L  E           +T   + +RE +ERL  +  +AA FY R L   PA   AR+++  RGI  +T   F++G++P D  + L+ YL ++GF  + +  AGL         RP     RG VDRFRGRL+ PI+D R  VIGFG R L + Q
Sbjct:   13 VKDRIDIVEIIGGYVQLKKRGRSYVGLCPFHNEKTPSFTVSPDKQVFYCFGCGAGGDVLTFLMKREGLSFPEALAALAARAGVELVGEE----------ETPAARRQRELKERLYRLGAIAASFYYRILARHPAGAPARSYLQRRGIKGVTARQFELGFAP-DAGAVLVNYLQRQGFTPEEIEQAGLS------LSRPP----RGLVDRFRGRLMFPIKDSRSRVIGFGGRVLGEGQ 228          
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A3D9V7Q5_THECX (DNA primase n=1 Tax=Thermasporomyces composti TaxID=696763 RepID=A0A3D9V7Q5_THECX)

HSP 1 Score: 174 bits (441), Expect = 3.160e-46
Identity = 105/244 (43.03%), Postives = 138/244 (56.56%), Query Frame = 1
Query:   49 ITDETLDLIRASTSITEVIGQHVEMKPAGRGMV-GCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSD 777
            I DE + L+R  T I EV+ Q+V ++PAG G + G CPFHE++TPSF+V    G++HCFGC   GDVI+FL +I+GL F E V  LA  AGI L + +      GG+     E+    +R RL    + AA+FY   L   P A   RA + +RG        F +GY+P + T+ L+ +L   GF  + LI  GLV            +  RGR DRFRGRLV PIRD  G V+GFGAR L D
Sbjct:    5 IRDEDIALVRERTRIDEVVSQYVTLRPAGGGSLKGLCPFHEEKTPSFNVRPHVGAFHCFGCAEGGDVISFLRKIEGLSFVEAVERLAARAGITLRYVD------GGR----SERREHGSRARLLEAHKAAAEFYAEQLHTSPEAAPGRAFLADRGFDRAAAEMFGVGYAPRESTA-LLRHLRGRGFSDEELITGGLVS-----------SGVRGRYDRFRGRLVWPIRDLSGAVVGFGARRLFD 226          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3B8_ECTSI6.870e-18896.49DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K157_9PHAE5.690e-16897.67Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YIS2_9STRA1.550e-5342.63Toprim domain-containing protein (Fragment) n=1 Ta... [more]
A0A2T0AW07_9THEO1.060e-5143.44DNA primase n=1 Tax=Moorella humiferrea TaxID=6769... [more]
UPI00137B53E73.410e-4940.64DNA primase n=1 Tax=Moorella sp. Hama-1 TaxID=2138... [more]
A0A4P6B3J5_9THEO1.550e-4740.98DNA primase n=5 Tax=Moorella TaxID=44260 RepID=A0A... [more]
A0A3M1ZJ48_9BACT2.330e-4741.56DNA primase n=1 Tax=Candidatus Dadabacteria bacter... [more]
UPI000832D2422.960e-4742.39DNA primase n=2 Tax=Alicyclobacillus TaxID=29330 R... [more]
A0A5D3I2J0_MOOTH7.940e-4741.35DNA primase n=6 Tax=Moorella thermoacetica TaxID=1... [more]
A0A3D9V7Q5_THECX3.160e-4643.03DNA primase n=1 Tax=Thermasporomyces composti TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7427contigEcto-sp13_S_contig7427:2370..6083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score559.7
Seed ortholog evalue8.4e-157
Seed eggNOG ortholog2880.D7G3B8
Model size905
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.DNA primase catalytic core, N-terminal domain
EggNOG OGs2S0EV@2759,COG0358@1
Ec32 ortholog descriptionDNA primase
Ec32 orthologEc-06_002280.1
Cds size903
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7427.18608.1prot_Ecto-sp13_S_contig7427.18608.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7427 2370..6081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464011.577649-CDS-Ecto-sp13_S_contig7427:2369..24791681464011.577649-CDS-Ecto-sp13_S_contig7427:2369..2479Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7427 2370..2479 +
1681464011.5905447-CDS-Ecto-sp13_S_contig7427:3656..38101681464011.5905447-CDS-Ecto-sp13_S_contig7427:3656..3810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7427 3657..3810 +
1681464011.6014366-CDS-Ecto-sp13_S_contig7427:4252..44761681464011.6014366-CDS-Ecto-sp13_S_contig7427:4252..4476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7427 4253..4476 +
1681464011.6123207-CDS-Ecto-sp13_S_contig7427:4869..49751681464011.6123207-CDS-Ecto-sp13_S_contig7427:4869..4975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7427 4870..4975 +
1681464011.6304636-CDS-Ecto-sp13_S_contig7427:5319..54001681464011.6304636-CDS-Ecto-sp13_S_contig7427:5319..5400Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7427 5320..5400 +
1681464011.641485-CDS-Ecto-sp13_S_contig7427:5629..57371681464011.641485-CDS-Ecto-sp13_S_contig7427:5629..5737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7427 5630..5737 +
1681464011.6504445-CDS-Ecto-sp13_S_contig7427:5961..60811681464011.6504445-CDS-Ecto-sp13_S_contig7427:5961..6081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7427 5962..6081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7427.18608.1

>prot_Ecto-sp13_S_contig7427.18608.1 ID=prot_Ecto-sp13_S_contig7427.18608.1|Name=mRNA_Ecto-sp13_S_contig7427.18608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp
GGGGGGGRKPVSPSKHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVG
CCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHD
LAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYT
RCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEG
FEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVI
GFGARDLSDSQAQGSVGSGFVIPEVSQKGQAKKKGDQTEGAAAATGGSSK
A
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mRNA from alignment at Ecto-sp13_S_contig7427:2370..6083+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7427.18608.1 ID=mRNA_Ecto-sp13_S_contig7427.18608.1|Name=mRNA_Ecto-sp13_S_contig7427.18608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7427:2370..6083+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGGAGGAGGAGGAGGGCGGAAACCGGTTAGTCCTAGCAAACACAT CACCGACGAGACCCTGGATCTTATCCGGGCGTCCACCAGCATCACCGAAG TCATCGGCCAGTGAGTCGTGTGGTGTGGCTTTGGTGTAGTTGGTGCTTGC GTGTGGGGATGGTGCACGCAGCGGTGCAGAGATTAGCGTCGTTGCGCTTC AAACGCAAACCACTAGTTGGTACAAGTCGCACCCATATGTATGTACCGTG TTGTTCTCACGCCATTGGGTGGGAACGCACACCATCCCACGATAACGCTT CTTTCCCCCTGGGCCCACCTCACCCCCCTCATGCTCACCAGGTTTTAGGG ATAGGCCTGACGGCACCCGCGGAAAAGGTTGCGCTGAACTATGTAGCAAG GTAGAGATTTTAGTACCTCTGTGCATGACAATCCATCCAGGCCGCGACTG GAGACGATCCTCGATTCATCCCCGACTTGTTTAAAAAACATGTGTCGATG ACATGTTTGTTTGGACGGTGTGCCGCTGGTACATGCGTAGCGGTGTCGGG TGGCGACACTACTGCCGTGGTGCGTATGTTGGCGTGCGGGACCTTTCTGA GTCCCCCAAGGACCATGAACGAGCTTGCTAATTGCAGGTTTAGCTGCTTT GGTCGTGGGCTGCTGCCCAAAAATGGGCAAACGTTCGTCGCAAGCAGAAA ATGGGGCGCTGGTGCTACTGCTGCCTGCTTGTTGGTCAGTTACCTCGAAC CCCTGCCGTGCTGCCGTGTGACGCTCGCACCGCGAGGCGACTGACTTCAT TGTTAGACTGGTGGTCACTCAACAACACACGACGACAACGCCCAAAGCTT GTAGTGTACGTGGCTGCTGTTGTGTCGTGTAGTCTGCTACCGTTCGCCGG CTTATGGTGCTACATACACGGCCATGGTATTTCAGTGTTCACCAGCACAC AGCGAACAACTTCAGTTTGACTTTAAAAGAGGCGTGTAGCTTGCGTGTGC TGATGCTGCTTCATTTCCCTGTTGCGTCTGCAGTTGCCCCGCCGGTTGCA AGGGGAGAAAACCTCTTTTGCCGCTGGTTATGCATACGTCGACGCAAGCA TGCCGCCGCCGCGTCCCAAAAGTTCCTCGGCGGCACCTCTGGTTGGCGTT GTTGTCTATGTACTCTGGCGGCCATCGCCCAGCAGGCGGTACACGTTCAC GCGTACCCAGCAGCCCCGAATCCCGGTTCAAGCGCGGTGTGTTATTCTCC TGCTTGTTACCTCCCTCCCCGTTTTGCATCCGTGAAGGCACGTGGAGATG AAGCCGGCGGGACGGGGGATGGTGGGGTGCTGCCCCTTTCACGAGGACCG GACGCCCTCCTTCTCCGTGGACGACTCCAGGGGGTCCTATCACTGCTTCG GCTGCGGCGCGAGCGGCGATGTGATCACGTTCTTGATGCAGGTGACCCCC CCCCCCCGAGGAGAGAAATAGCGGCGGTAGGATGCATGATGAAGGAGTAG TAGGTGAAGCTTTCTTCTGCGAAGCGCAGGAAAGCACGTTTCTCGCTCGA AGCGGGTGGGCCTCTCTCCCGCTGTCAGTGGATGGTCCGGCAAACGGCGG TATGTCTCGCGCGTTCGCCCTCTGGTATCGTACGGTGGTGCAACACACTG TTGTTGATGTCCAACTGCTGTCTCCTCGACCGTACCTTGTCTAATTTTGC TGTAAACGTTTTCCGAGGGCCACGGCGTTACTCCCTGCTGTGTCATACTG TCATACTGTCAAAAGACATTCCTCTCTGTCATCCCTCCCCTCTCATATGA TTTAAAGTATCAAGGAAGAGACGTGACGCGGAACTGACTCTCTATGGTCA CATGTGCTACAATCTCGTCTAATGTTGTTCCAGATCGATGGCCTTGGGTT CCGAGAGGTGGTGCACGACCTAGCCGTCGAGGCGGGCATCCCCCTCGGCT TCGAGAACGCGGCCGACGGCAGCGGCGGCGGCAAGTGGGACACCGCGGAC GAGAAAGCCCGGCGGGAGGCCCGGGAGAGGCTCAGCCTCGTGCTGCAGAT GGCGGCGCAGTTTTACACCCGGTGTCTCGTGGAGATGCCGGCGGCGGGTG GCGCCAGGTGAGCGGGAGTGCGAGAGCCGCCCCGCTCTCTCTCCCTCTTT AGAAACCAATACGACGGCGGTTGTCTCGGGTTTGCAGTTGTCGATCGTCC TGTAAAAGAAAATGCATCATGTGCTAGCTTCCATCAGCAAGAAACTGTGT CGTGATCGCGTTCATCAGTCGGAAGCGCCGAATCACGCACTCTATTTATT TCCGAATCCTCTTCCAAGGGGGCGAGGAATCATCATCCCATCGTCTGTGC ATGCCGTCAGCAAAGTCTCAACGATATTAGGCATGGGCTAAGATGGCCAG GGGGAACTACTGCTGTGACGGAAGTCGTTCGCTTGTTGCTATGGTTGTTG AGGCGCCTCCCTCTCTTGCTCCCCCGCGCGGTCTCTTGACTGGTTGACAG GGCGCACATTATAGAGCGGGGCATCTCCCCCATGACGGTGATGGACTTCC AGATGGGGTACAGCCCCGCGGACCTGACGAGTCCGCTCATTGAGTACCTC GATCAGGTGCTTCTTGTGTGGGTCGTGGTTGCTGTTGCTGTCGACGTTGC CGCGTGGCCGTTGTTCTGGTATTGTTTGGTTCTTGGGTGTACAGCAGTGC TACCGTAATATAGTTGGTGTTGTTGTTGTTGACACTGCCGCGTTGTCATT GTTGTGGTCGCTGATGCGGCCGTCGTCGTTCCTGTTGCTGGTTTGGGGTT CGGTTGGTGCTGTCGTAATATTGTTGTTGTTGTTGTGGTTGTTGTTGTTG TTGGTGGTGGTGGTGGTGGTGTTGTTGGTGTTGTTGTTATTGTTGTTGTC GCTGCTGCTCCTGCTCAACACCAATCGCCTTCGTCCGTGCGGTTCCACAG GAGGGCTTCGAGATGGACACCCTCATTGATGCCGGGCTTGTGCCGGATAC GTCCAAGTGGAAGTACCGCCCATCGCCGAACGTAAGCATGGCTTTTCCAC GCCTCTGCGTCTGTTGAGTATTCTTCAAACGTGGCAAGGAGGGGGGGGTA CTCATGGTTTGCATACCTTAGTTGTCGGGGGGGGGCGTGGATACCTTGTT GAGCAAACAAGTCACGATTTCTACCACCAGCAACACCACAAACGCGCACC AATTCTCCCACTACGATCCCTCTGTCTCTCGTGTTTGATGACGCGCGTTC TCAACATCAGGACGCGCGGGGCCGGGTGGACCGCTTTCGGGGTCGACTAG TGGTGCCGATCCGGGATCACCGTGGGCTTGTGATTGGCTTTGGGGCGAGG GATCTTTCGGATTCTCAGGTAACGAGATGCCATGAGCGGAATGGGGCGGA GCGATGAGGGGGAGGGGTGGTGGCGAGGGATGTGTGTGTTTTGTGTGCTC TTGCCTTCGCGTTGTGGGGGGGGTCGCACGCGAGGGATGTGCGTTTTTTC TGCCGTTGCGTGCCAGCTAGTTTTTATGATTTTATTGTCGGCTTGAAGTG GTTGCTCTTCTCCTCCGCATATGGCGTTGCGCGCTTTCTCAGGCGCAGGG AAGCGTCGGCAGCGGCTTCGTGATTCCTGAGGTTTCTCAAAAGGGACAGG CCAAGAAAAAGGGAGATCAGACCGAGGGGGCGGCGGCCGCCACGGGAGGT TCCAGCAAAGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7427:2370..6083+

>mRNA_Ecto-sp13_S_contig7427.18608.1 ID=mRNA_Ecto-sp13_S_contig7427.18608.1|Name=mRNA_Ecto-sp13_S_contig7427.18608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7427:2370..6083+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGGAGGAGGAGGAGGAGGGCGGAAACCGGTTAGTCCTAGCAAACACAT
CACCGACGAGACCCTGGATCTTATCCGGGCGTCCACCAGCATCACCGAAG
TCATCGGCCAGCACGTGGAGATGAAGCCGGCGGGACGGGGGATGGTGGGG
TGCTGCCCCTTTCACGAGGACCGGACGCCCTCCTTCTCCGTGGACGACTC
CAGGGGGTCCTATCACTGCTTCGGCTGCGGCGCGAGCGGCGATGTGATCA
CGTTCTTGATGCAGATCGATGGCCTTGGGTTCCGAGAGGTGGTGCACGAC
CTAGCCGTCGAGGCGGGCATCCCCCTCGGCTTCGAGAACGCGGCCGACGG
CAGCGGCGGCGGCAAGTGGGACACCGCGGACGAGAAAGCCCGGCGGGAGG
CCCGGGAGAGGCTCAGCCTCGTGCTGCAGATGGCGGCGCAGTTTTACACC
CGGTGTCTCGTGGAGATGCCGGCGGCGGGTGGCGCCAGGGCGCACATTAT
AGAGCGGGGCATCTCCCCCATGACGGTGATGGACTTCCAGATGGGGTACA
GCCCCGCGGACCTGACGAGTCCGCTCATTGAGTACCTCGATCAGGAGGGC
TTCGAGATGGACACCCTCATTGATGCCGGGCTTGTGCCGGATACGTCCAA
GTGGAAGTACCGCCCATCGCCGAACGACGCGCGGGGCCGGGTGGACCGCT
TTCGGGGTCGACTAGTGGTGCCGATCCGGGATCACCGTGGGCTTGTGATT
GGCTTTGGGGCGAGGGATCTTTCGGATTCTCAGGCGCAGGGAAGCGTCGG
CAGCGGCTTCGTGATTCCTGAGGTTTCTCAAAAGGGACAGGCCAAGAAAA
AGGGAGATCAGACCGAGGGGGCGGCGGCCGCCACGGGAGGTTCCAGCAAA
GCG
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