mRNA_Ecto-sp13_S_contig7427.18608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI) HSP 1 Score: 560 bits (1442), Expect = 6.870e-188 Identity = 275/285 (96.49%), Postives = 282/285 (98.95%), Query Frame = 1
Query: 22 RKPVSPSKHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVSQKGQAKKKGDQTEGAA 876
RKP PS+HITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQ+GYSPADLTSPLIEYLDQEGFEMDTL+DAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIP+VS+KG+AKKKG+QTE AA
Sbjct: 174 RKPFGPSRHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQLGYSPADLTSPLIEYLDQEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPDVSKKGKAKKKGEQTEAAA 458
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE) HSP 1 Score: 509 bits (1311), Expect = 5.690e-168 Identity = 251/257 (97.67%), Postives = 255/257 (99.22%), Query Frame = 1
Query: 121 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVSQKGQAKKKGDQTEGAAAATGG 891
MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQ+GYSPADLTSPLIEYLDQEGFEMDTL+DAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVS KG+AKKKG+QTE AAAATGG
Sbjct: 1 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQLGYSPADLTSPLIEYLDQEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQAQGSVGSGFVIPEVSNKGKAKKKGEQTEAAAAATGG 257
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A835YIS2_9STRA (Toprim domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS2_9STRA) HSP 1 Score: 191 bits (485), Expect = 1.550e-53 Identity = 107/251 (42.63%), Postives = 146/251 (58.17%), Query Frame = 1
Query: 49 ITDETLDLIRASTSITEVIGQHVEMKPAGR-GMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADE-KARREA----RERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGR----VDRFRGRLVVPIRDHRGLVIGFGARDL 771
I+D +L+ +R + ++ VIG+HV++ +G M GCCPFH+D+TPS SVDD++G YHCFGCGA GDVI F+M+ + L F LA + G+ L +E G GG D ++ +A R+A R+RL LQ+AA+FY R L AG ARAH+ RG+SP T + FQ+GYSPA + AGL Y + + G +DRFRGRL+VPIRD RG V+ FG R+L
Sbjct: 5 ISDHSLEALRRTARLSHVIGEHVKLTSSGHTSMKGCCPFHDDKTPSLSVDDAKGLYHCFGCGAGGDVIKFVMETERLSFAAAAKTLAEQHGVQLTYEG---GGGGYSADMSEAAQAARDAKLAQRDRLLRALQLAAEFYARSLSTARTAGAARAHLASRGVSPATALRFQLGYSPAXXXXXXXXXXXXXXXXXXXXVQAGLA-------YNNTASGGGGGGAPLLDRFRGRLIVPIRDARGAVVAFGGREL 245
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A2T0AW07_9THEO (DNA primase n=1 Tax=Moorella humiferrea TaxID=676965 RepID=A0A2T0AW07_9THEO) HSP 1 Score: 188 bits (478), Expect = 1.060e-51 Identity = 106/244 (43.44%), Postives = 146/244 (59.84%), Query Frame = 1
Query: 52 TDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
+ E ++ ++ I EVI +V +K +GR VG CPFH+++TPSF+V + ++CFGCG GDVI FLM+ DGL F E V LA AGI L G +T + +RE +ERL + +AA FY R L+ PAA AR +++ RG+ T F++GY+P T+ LI+YL ++GF +D ++ AGL RPS G VDRFRGRL+ PI+D RG VIGFG R L+D Q
Sbjct: 6 SQEVIEEVKERVDIVEVIAGYVRLKKSGRNYVGLCPFHKEKTPSFTVSPDKQMFYCFGCGVGGDVIAFLMKQDGLSFPEAVKTLAARAGIDLA----------GVLETPAARRQREWKERLYQLGAVAASFYYRLLMRHPAAAPARRYLMMRGVKGETARLFELGYAPETGTA-LIDYLRRQGFTLDDIVHAGLC------LSRPSG----GAVDRFRGRLMFPIKDARGRVIGFGGRTLNDGQ 228
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: UPI00137B53E7 (DNA primase n=1 Tax=Moorella sp. Hama-1 TaxID=2138101 RepID=UPI00137B53E7) HSP 1 Score: 182 bits (461), Expect = 3.410e-49 Identity = 102/251 (40.64%), Postives = 142/251 (56.57%), Query Frame = 1
Query: 31 VSPSKHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
VS + + + ++ I E+IG +V++K G VG CPFH ++TPSF+V + ++CFGCGA GDV+TFLM+ +GL F E + LA AG+ L GK +T + +RE RERL + +AA FY R L PA AR+++ RGI T F++GY+P D T L+ YL ++GF + + AGL RP RG +DRFRGRL+ PI+D R VIGFG R L + Q
Sbjct: 10 VSVTTACNQDVIHEVKERVDIVEIIGGYVQLKKRGHSYVGLCPFHNEKTPSFTVSPEKQVFYCFGCGAGGDVLTFLMKREGLSFPEALAALAARAGVELA----------GKEETPAARRQREQRERLYRLGAVAASFYYRILARHPAGAAARSYLQGRGIKGATARQFELGYAP-DATGALVTYLQRQGFTPEEITQAGLS------LSRPP----RGLMDRFRGRLMFPIKDSRSRVIGFGGRVLGEGQ 239
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A4P6B3J5_9THEO (DNA primase n=5 Tax=Moorella TaxID=44260 RepID=A0A4P6B3J5_9THEO) HSP 1 Score: 177 bits (449), Expect = 1.550e-47 Identity = 100/244 (40.98%), Postives = 139/244 (56.97%), Query Frame = 1
Query: 52 TDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
+ E +D ++ I E+IG +V +K +GR VG CPFH+++TPSF+V + ++CFGCGA GDV+ FLM+ DGL F E V LA GI L G ++ K +RE +ERL + +AA FY R L+ P AR ++ +RG+ T F++GY+P D + L++YL ++GF + AGL RP G DRFRGRL+ PI+D RG VIGFG R LS Q
Sbjct: 6 SQEVIDEVKDRVDIVEIIGSYVRLKKSGRNYVGLCPFHKEKTPSFTVSPDKQMFYCFGCGAGGDVLAFLMKQDGLSFPEAVKTLAARVGIDLT----------GAEESPAAKRQREWKERLYQLGAIAASFYYRLLMRHPVGAAARLYLQQRGVKGETARLFELGYAP-DTGTALVDYLRRQGFTPRDIDQAGLSAS------RPPL----GTADRFRGRLMFPIKDSRGRVIGFGGRTLSGGQ 228
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A3M1ZJ48_9BACT (DNA primase n=1 Tax=Candidatus Dadabacteria bacterium TaxID=2080303 RepID=A0A3M1ZJ48_9BACT) HSP 1 Score: 176 bits (447), Expect = 2.330e-47 Identity = 101/243 (41.56%), Postives = 137/243 (56.38%), Query Frame = 1
Query: 55 DETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
DETL IR SI +++G++VE++ +G+ G CPFH++RTPSF V D RG YHCFGCGA GD+ F+M+++GL F E V LA EAG+PL + A G DEKA RL VL++AA+++ L A ARA++ RGI P F +GY+P PL +L G+++ AGLV D G DRFR RL+ PI+D G V+GFG R L + +
Sbjct: 22 DETLQAIRDRVSIVDLVGRYVELRRSGKNWKGLCPFHDERTPSFVVSDERGFYHCFGCGAGGDLFRFVMEMEGLRFPEAVERLAREAGVPLARDPA------GPRPDRDEKA------RLLAVLELAARYFRHQLTAGRAGEPARAYLERRGIGPELAERFGLGYAPKGW-DPLARFLKSRGWDLGVAEQAGLV----------RARDGGGVYDRFRDRLMFPIQDAAGRVVGFGGRVLGEGE 241
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: UPI000832D242 (DNA primase n=2 Tax=Alicyclobacillus TaxID=29330 RepID=UPI000832D242) HSP 1 Score: 176 bits (447), Expect = 2.960e-47 Identity = 103/243 (42.39%), Postives = 138/243 (56.79%), Query Frame = 1
Query: 49 ITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGR-VDRFRGRLVVPIRDHRGLVIGFGARDLS 774
I D ++ +R I +VI +HV+++ +GR VG CPFH +RTPSFSV R YHCFGCGA G VI F+M ++GL F+E V LA A +PL FE + T RR RE + ++AA+ Y L+ A A A++ R IS T M+F++G++PAD S L +L + GF D LIDAGLV GR VDRFRGRL++PI D +G V+ FG R L+
Sbjct: 4 IPDSFVEEVRRRVDIVDVISEHVQLRRSGRSFVGLCPFHNERTPSFSVSPDRQLYHCFGCGAGGTVIRFVMDLEGLDFQEAVVALARRANLPLPFEPDS--------STTVSSHRRNRREAMQQAHELAAKLYNYILMNTSAGVQALAYLEGRKISRKTAMEFRLGFAPAD-GSTLYAFLRRRGFADDVLIDAGLVVPLG------------GRIVDRFRGRLMIPIEDAQGRVVAFGGRILA 225
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A5D3I2J0_MOOTH (DNA primase n=6 Tax=Moorella thermoacetica TaxID=1525 RepID=A0A5D3I2J0_MOOTH) HSP 1 Score: 175 bits (444), Expect = 7.940e-47 Identity = 98/237 (41.35%), Postives = 138/237 (58.23%), Query Frame = 1
Query: 73 IRASTSITEVIGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSDSQ 783
++ I E+IG +V++K GR VG CPFH ++TPSF+V + ++CFGCGA GDV+TFLM+ +GL F E + LA AG+ L E +T + +RE +ERL + +AA FY R L PA AR+++ RGI +T F++G++P D + L+ YL ++GF + + AGL RP RG VDRFRGRL+ PI+D R VIGFG R L + Q
Sbjct: 13 VKDRIDIVEIIGGYVQLKKRGRSYVGLCPFHNEKTPSFTVSPDKQVFYCFGCGAGGDVLTFLMKREGLSFPEALAALAARAGVELVGEE----------ETPAARRQRELKERLYRLGAIAASFYYRILARHPAGAPARSYLQRRGIKGVTARQFELGFAP-DAGAVLVNYLQRQGFTPEEIEQAGLS------LSRPP----RGLVDRFRGRLMFPIKDSRSRVIGFGGRVLGEGQ 228
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Match: A0A3D9V7Q5_THECX (DNA primase n=1 Tax=Thermasporomyces composti TaxID=696763 RepID=A0A3D9V7Q5_THECX) HSP 1 Score: 174 bits (441), Expect = 3.160e-46 Identity = 105/244 (43.03%), Postives = 138/244 (56.56%), Query Frame = 1
Query: 49 ITDETLDLIRASTSITEVIGQHVEMKPAGRGMV-GCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKARREARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQMGYSPADLTSPLIEYLDQEGFEMDTLIDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIGFGARDLSD 777
I DE + L+R T I EV+ Q+V ++PAG G + G CPFHE++TPSF+V G++HCFGC GDVI+FL +I+GL F E V LA AGI L + + GG+ E+ +R RL + AA+FY L P A RA + +RG F +GY+P + T+ L+ +L GF + LI GLV + RGR DRFRGRLV PIRD G V+GFGAR L D
Sbjct: 5 IRDEDIALVRERTRIDEVVSQYVTLRPAGGGSLKGLCPFHEEKTPSFNVRPHVGAFHCFGCAEGGDVISFLRKIEGLSFVEAVERLAARAGITLRYVD------GGR----SERREHGSRARLLEAHKAAAEFYAEQLHTSPEAAPGRAFLADRGFDRAAAEMFGVGYAPRESTA-LLRHLRGRGFSDEELITGGLVS-----------SGVRGRYDRFRGRLVWPIRDLSGAVVGFGARRLFD 226 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7427.18608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7427.18608.1 >prot_Ecto-sp13_S_contig7427.18608.1 ID=prot_Ecto-sp13_S_contig7427.18608.1|Name=mRNA_Ecto-sp13_S_contig7427.18608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=301bp GGGGGGGRKPVSPSKHITDETLDLIRASTSITEVIGQHVEMKPAGRGMVGback to top mRNA from alignment at Ecto-sp13_S_contig7427:2370..6083+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7427.18608.1 ID=mRNA_Ecto-sp13_S_contig7427.18608.1|Name=mRNA_Ecto-sp13_S_contig7427.18608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7427:2370..6083+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7427:2370..6083+ >mRNA_Ecto-sp13_S_contig7427.18608.1 ID=mRNA_Ecto-sp13_S_contig7427.18608.1|Name=mRNA_Ecto-sp13_S_contig7427.18608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7427:2370..6083+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |