prot_Ecto-sp13_S_contig74123.18596.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig74123.18596.1
Unique Nameprot_Ecto-sp13_S_contig74123.18596.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length69
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74123.18596.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.810e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:    7 SSVFWGGITLGRLLAIPLAVPFSAGVLLTVNLVGGLLSSTLLWFTGR 53
            +S+FWGGITLGRLLAI LAVPFSAGVLLTVNLV GLLSSTLLW  GR
Sbjct:  340 ASLFWGGITLGRLLAIQLAVPFSAGVLLTVNLVLGLLSSTLLWVIGR 386
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BLAST of mRNA_Ecto-sp13_S_contig74123.18596.1 vs. uniprot
Match: A0A535HXZ5_9CHLR (MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535HXZ5_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 2.490e-6
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0 
Query:    5 HRSSVFWGGITLGRLLAIPLAVPFSAGVLLTVNLVGGLLSSTLLWFTGRVSEGGGWVG 62
            + +S FWG +T+GRLL+IPLA  FS  V+L  +L+GG+LS  L+  TG  S    W+G
Sbjct:  251 YLTSTFWGALTVGRLLSIPLAARFSPRVILLADLLGGVLSMLLI-LTGSQSLALTWLG 307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74123.18596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9W6_9PHAE5.810e-1687.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A535HXZ5_9CHLR2.490e-648.28MFS transporter (Fragment) n=1 Tax=Chloroflexi bac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 4..68
e-value: 3.6E-7
score: 31.6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..68
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableTMHMMTMhelixcoord: 20..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74123contigEcto-sp13_S_contig74123:285..491 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74123.18596.1mRNA_Ecto-sp13_S_contig74123.18596.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig74123 285..491 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig74123.18596.1 ID=prot_Ecto-sp13_S_contig74123.18596.1|Name=mRNA_Ecto-sp13_S_contig74123.18596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MNKQHRSSVFWGGITLGRLLAIPLAVPFSAGVLLTVNLVGGLLSSTLLWF
TGRVSEGGGWVGVLSCFA*
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