mRNA_Ecto-sp13_S_contig74123.18596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig74123.18596.1
Unique NamemRNA_Ecto-sp13_S_contig74123.18596.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig74123.18596.1 vs. uniprot
Match: A0A6H5J9W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W6_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.810e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   19 SSVFWGGITLGRLLAIPLAVPFSAGVLLTVNLVGGLLSSTLLWFTGR 159
            +S+FWGGITLGRLLAI LAVPFSAGVLLTVNLV GLLSSTLLW  GR
Sbjct:  340 ASLFWGGITLGRLLAIQLAVPFSAGVLLTVNLVLGLLSSTLLWVIGR 386
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BLAST of mRNA_Ecto-sp13_S_contig74123.18596.1 vs. uniprot
Match: A0A535HXZ5_9CHLR (MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535HXZ5_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 2.490e-6
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   13 HRSSVFWGGITLGRLLAIPLAVPFSAGVLLTVNLVGGLLSSTLLWFTGRVSEGGGWVG 186
            + +S FWG +T+GRLL+IPLA  FS  V+L  +L+GG+LS  L+  TG  S    W+G
Sbjct:  251 YLTSTFWGALTVGRLLSIPLAARFSPRVILLADLLGGVLSMLLI-LTGSQSLALTWLG 307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig74123.18596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9W6_9PHAE5.810e-1687.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A535HXZ5_9CHLR2.490e-648.28MFS transporter (Fragment) n=1 Tax=Chloroflexi bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig74123contigEcto-sp13_S_contig74123:285..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size207
Hectar predicted targeting categorysignal peptide
Exons1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464010.6443422-CDS-Ecto-sp13_S_contig74123:284..4911681464010.6443422-CDS-Ecto-sp13_S_contig74123:284..491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig74123 285..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig74123.18596.1prot_Ecto-sp13_S_contig74123.18596.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig74123 285..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig74123.18596.1

>prot_Ecto-sp13_S_contig74123.18596.1 ID=prot_Ecto-sp13_S_contig74123.18596.1|Name=mRNA_Ecto-sp13_S_contig74123.18596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MNKQHRSSVFWGGITLGRLLAIPLAVPFSAGVLLTVNLVGGLLSSTLLWF
TGRVSEGGGWVGVLSCFA*
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mRNA from alignment at Ecto-sp13_S_contig74123:285..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig74123.18596.1 ID=mRNA_Ecto-sp13_S_contig74123.18596.1|Name=mRNA_Ecto-sp13_S_contig74123.18596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74123:285..491- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAAACAACACCGAAGCAGCGTCTTCTGGGGAGGGATCACGCTAGG
GAGGCTTCTCGCCATACCACTCGCCGTTCCGTTTTCGGCCGGTGTTCTTT
TGACGGTGAACCTGGTGGGGGGGTTGCTCTCATCAACATTGCTGTGGTTC
ACTGGAAGGGTGAGCGAGGGGGGTGGGTGGGTGGGTGTACTCTCGTGTTT
TGCATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig74123:285..491-

>mRNA_Ecto-sp13_S_contig74123.18596.1 ID=mRNA_Ecto-sp13_S_contig74123.18596.1|Name=mRNA_Ecto-sp13_S_contig74123.18596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig74123:285..491- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAAACAACACCGAAGCAGCGTCTTCTGGGGAGGGATCACGCTAGG
GAGGCTTCTCGCCATACCACTCGCCGTTCCGTTTTCGGCCGGTGTTCTTT
TGACGGTGAACCTGGTGGGGGGGTTGCTCTCATCAACATTGCTGTGGTTC
ACTGGAAGGGTGAGCGAGGGGGGTGGGTGGGTGGGTGTACTCTCGTGTTT
TGCATGA
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