prot_Ecto-sp13_S_contig12209.1859.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12209.1859.1
Unique Nameprot_Ecto-sp13_S_contig12209.1859.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length592
Homology
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE)

HSP 1 Score: 1044 bits (2700), Expect = 0.000e+0
Identity = 553/591 (93.57%), Postives = 564/591 (95.43%), Query Frame = 0
Query:    1 MAGRGRGGRFGGWGGNSRGKSVASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGKTKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEPDNSMGVLRRTDEENIEPSGSSSSRGGGPRKSRNISTGTSSVTNAGAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGGGQTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIADNDAARMKRADALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDNVDDEGAGASAGGVGVAGPPTAAGSCGRRGHSSADLLVGGPYCVDGWEVEPMNQDDPY 591
            MAGRGRGGRFGG  GNS GK VASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGK KLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEP+NS GV RRTDEENIEPSGSSSSRGGG RKS N STGTSSVTNA AGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGG +TTPDVTPKRPTSRAR+EEA GET RSSKAPSFFSGQWEAWL+VDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR+RDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCD LRDTV+FLARTHRHIASLLE SCRR AGL PV GSRECS G AMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIA +DAARMKRADALLG LVCSGGAGTNKLPQPLR+LLCRLFLGD+VDDEGAGASAGGVG AGPPTAAG  GRRGHS+ADL VGGPYCVDGW+VEPMNQDDPY
Sbjct:    1 MAGRGRGGRFGGQDGNSHGKIVASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEPENSSGV-RRTDEENIEPSGSSSSRGGGARKSSNKSTGTSSVTNADAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGGEETTPDVTPKRPTSRARKEEASGETARSSKAPSFFSGQWEAWLVVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARKRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDGLRDTVNFLARTHRHIASLLELSCRREAGLSPVRGSRECSGGRAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIAGDDAARMKRADALLGGLVCSGGAGTNKLPQPLRRLLCRLFLGDSVDDEGAGASAGGVGAAGPPTAAGGYGRRGHSNADLSVGGPYCVDGWDVEPMNQDDPY 590          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A836CKB8_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.250e-55
Identity = 127/303 (41.91%), Postives = 164/303 (54.13%), Query Frame = 0
Query:  243 SFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPT----SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGD-------GIADNDAARMKRADALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDN 534
            SF  G W   LI D RE    + Q+++L   + CE R LPLGDMLW+AR  D  +     EVLLGYIVERKTASDL SS++DGR+ EQK R+   GL R IYLVEG + H  +L PA LRTA+  +QA  G+ V+   ++ ++V  L R HRHIA+ LE +CR              S  G  +RP M+  +Y   C K      VR V G  +RQ  GCSAARA AI+  + +PL  MLA+E A   +       GI     ARM  A                KL +PL+  LC+L+  D+
Sbjct:    7 SFAGGIWTPVLIFDTREEHAQASQAAVLNANMLCEVRSLPLGDMLWVARNMDRQSPSYLQEVLLGYIVERKTASDLGSSMVDGRFHEQKHRMARHGLGRVIYLVEGPITHTTRLTPAHLRTAMAHTQAQDGMTVLWTANVTESVAHLQRVHRHIAASLEAACR----------GITASAPGTGVRPIMSMDQYRAQCGKGKDGD-VRYVFGCQLRQVYGCSAARAAAILNEYPTPLDFMLAMEAAGESERCLELLAGIKGEPGARMAEA----------------KLTKPLQAALCKLYADDD 282          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A7S3XK47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK47_HETAK)

HSP 1 Score: 131 bits (330), Expect = 9.970e-31
Identity = 93/245 (37.96%), Postives = 127/245 (51.84%), Query Frame = 0
Query:  265 VQSSLLQKGIRCETRQLPLGDMLWIARRR------DDPTSEVL--------------------------LGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLM 477
            VQ+ LL  G+ CE  QL +GDM+W AR R      D P ++ L                          LG++VERKTA DLA SIIDGRY EQK RLK SGL +  YLVEG+L+ Q+ L   +LRTA+ S+    G +V +C +L ++V +LARTH  +A  L  +        P+   +      A+L P MTY  Y   C K      V+ + G  ++Q PG S  + +AI+  F +P  LM
Sbjct:    2 VQAKLLAVGVACEVGQLAVGDMVWAARWRRPGWHADIPLTQTLNQPQKKKSKSTATILENLHKNEELFVLGFVVERKTAEDLAKSIIDGRYAEQKVRLKKSGLSKVTYLVEGSLSGQDVLPTKSLRTAMASTLIQHGFSVQRCANLDESVRWLARTHHQVARQLGYAVAAAQSGDPLDSFK------AVL-PVMTYRHYHDQCGKLKAQK-VQDIFGMQLKQFPGMSVGKIQAILERFPTPQRLM 238          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A7R9UCP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.900e-27
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 0
Query:  233 GETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR-RRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLL 396
            GE    S+ P          L+ D+RE    +VQS LLQ+G+ CE R L LGDM+WIA+ RR D   E +L +I+ERK+A+DLA SIIDGRY EQK RL+ SG+    YLVEG  + QE+L   ALRTA+  ++   G  V+  +++  + + L R H  I SL+
Sbjct:  418 GERRPDSRCPPVPFEDLSVILVQDHRETRKDAVQSHLLQRGVSCENRALHLGDMIWIAQDRRSDV--EYVLDFIIERKSAADLAESIIDGRYAEQKSRLRASGIGHVTYLVEGAASSQERLPKQALRTAMAETRVLPGFRVLHTNNIAQSAEELRRMHEQIKSLM 580          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A4D9DDT9_9STRA (ERCC4 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDT9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.950e-26
Identity = 104/304 (34.21%), Postives = 145/304 (47.70%), Query Frame = 0
Query:  248 QWEAWLIVDNREHEFM-SVQSSLLQKGIRCETRQLPLGDMLWIARRRDD------------------------------PTSE---VLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSG--LRRRIYLVEGNLNH-QEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHI----ASLLEQSCRRG-----AGLWP-------VGGSRECSE-----GGAMLRPA---MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIA 490
            +WE   ++D  EHE   S++++LLQ GIRCE R L L D+LW+ARRR +                              PT E   ++L Y++ERKT  DLASSI DGRY EQK R+   G  + R  YLVEG L    + + PAALRTAL+S+Q   G+ V+Q  SL  T+  L R H  I    A  L+ +C          L P       +  S   SE       A   PA   +   EY   C K  G+ +VR +  A +      S A+++A+V A+ +P  L  A++     + +A
Sbjct:  350 EWEVVALLDRVEHENNPSIEATLLQAGIRCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAAGIAVDPGDAGGLREGGHPTEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDMIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDLLPATESFDGLAQSERLSEYLQKHSKAFPLPASRIIRLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLARAMQSITEEEAVA 653          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A067BND5_SAPPC (ERCC4 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BND5_SAPPC)

HSP 1 Score: 116 bits (291), Expect = 8.210e-25
Identity = 95/254 (37.40%), Postives = 127/254 (50.00%), Query Frame = 0
Query:  248 QWEAWLIVDNREHEFMSVQS----SLLQKGIRCETRQLPLGDMLWIARRRDDPT-------SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWP----VGGSRECSEGGAMLRPA--MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAA 484
            +WE  L++D+RE    S +S     LL+ G+ CE R L LGDM+WIARR   PT        E +L  IVERK  SDLA SIID RY EQK+RL  +GLR  +YL+EG+L  +  L   AL TAL  +Q      V    S  +TV FL+  H H         +      P    +G    C      L P    ++GE+ +   K+A  TT  ++   M+ Q PG SA RA  +  A  + L L    ++AA
Sbjct:   84 EWEIVLLLDHREMVSRSNKSVFERKLLEAGVTCEVRGLHLGDMMWIARRHR-PTFGGRAIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAGLRYVVYLLEGSLAVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKVRNAAPPTAASIGRLPACLRDFTQLIPTTWQSFGEFNETFRKKAAPTT-GELYQMMLMQVPGISATRARDLGAAHPTFLSLWQETQKAA 335          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: UPI001EB09496 (crossover junction endonuclease MUS81-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB09496)

HSP 1 Score: 120 bits (301), Expect = 9.620e-25
Identity = 100/298 (33.56%), Postives = 150/298 (50.34%), Query Frame = 0
Query:  212 QTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFS---GQWEAWLIVDNREHEFMSVQSS------LLQKGIRCETRQLPLGDMLWIARRRDDPTS---------EVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVE--GNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLE----QSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAAS 485
            +T PD+TP    S A  + +   +  SS  P  FS   G ++  L VDNRE    S   S      L++ G+ C+ R+L +GDMLWIAR R  P           E++L +I+ERK   DL SS+IDGR+ EQK RLK SG+   IYL+E  G+L H   +A   ++ A+V++Q   G  + +   +++TV +L    R++ S       Q+C     L  + GS    E   +L     +  YA   +K     TVR++ G  + Q  G SA +A+AI   + +P  +  A +R  S
Sbjct:  562 ETLPDITPA--FSAAGSQASSVTSAGSSLPPPDFSLTPGSFDVVLCVDNREFYGGSKSQSKTLLPELIKNGVECDLRELQIGDMLWIARERLQPQPGQLQRPKGRELVLDFIIERKRMDDLVSSMIDGRFREQKFRLKRSGIANAIYLIEDYGSLQHFS-IAEDRIKQAIVNTQVIDGFKMKRTSGVKETVAYLTVMTRYLQSFYRTKSLQACTPEM-LRELDGSFHIEESEKLLTTFQHF-NYASVKSK---DLTVRELFGKQLIQLHGMSADKAKAITDRYPTPTSIFRAYDRCIS 851          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A1V9ZBA3_9STRA (Crossover junction endonuclease MUS81-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBA3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.920e-24
Identity = 91/246 (36.99%), Postives = 124/246 (50.41%), Query Frame = 0
Query:  248 QWEAWLIVDNRE----HEFMSVQSSLLQKGIRCETRQLPLGDMLWIARR-RDDP----TSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQS--CRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCA--KRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLAL 480
            +WE  L++D+RE          +  LL+  + CE R L LGDMLWIARR R D       E +L  +VERK  +DLA SIID RY EQK+RL  SGLR  +YLVEG+L+ +  +  A LRTAL  +Q      V    +  +TV FLA  H H+     +S  CR  A     G               M++  YA   A  ++  + +  ++   M+ Q PG SA RA+A+  A  +   L  AL
Sbjct:  264 EWEVVLLLDHREMLSRRNPAVFERKLLEAHVTCEVRALHLGDMLWIARRGRQDQGRTVVEEFVLDVVVERKAVTDLALSIIDKRYTEQKQRLAESGLRYVVYLVEGSLSTETAIGAAGLRTALTRTQVLNNYLVHHAATADETVAFLAALHWHVVGAFRESYRCRNCAPPTSAGPPPPAPLVDFTQLLPMSWQPYADFNATFRKKAAPSAGELYQMMLMQIPGISAGRAQALGTAHPTFASLWAAL 509          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A067CHT1_SAPPC (ERCC4 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CHT1_SAPPC)

HSP 1 Score: 118 bits (295), Expect = 2.120e-24
Identity = 96/254 (37.80%), Postives = 127/254 (50.00%), Query Frame = 0
Query:  248 QWEAWLIVDNREHEFMSVQS----SLLQKGIRCETRQLPLGDMLWIARRRDDPT-------SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGS----RECSEGGAMLRPA--MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAA 484
            +WE  L++D+RE    S +S     LL+ G+ CE R L LGDM+WIARR   PT        E +L  IVERK  SDLA SIID RY EQK+RL  +GLR  +YL+EG+L  +  L   AL TAL  +Q      V    S  +TV FL+  H H         +      PV  S      C      L P    ++GE+ +   K+A  TT  ++   M+ Q PG SA RA  +  A  + L L    ++AA
Sbjct:  275 EWEIVLLLDHREMVSRSSKSVFERKLLEAGVTCEVRGLHLGDMMWIARRHR-PTFGGRPIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAGLRYVVYLLEGSLAVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKVRNAAPPVAASIGRPPACLRDFTQLIPTTWQSFGEFNETFRKKAAPTT-GELYQMMLMQVPGISATRARDLGAAHPTFLSLWQETQKAA 526          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A367J7A8_RHIST (Crossover junction endonuclease mus81 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J7A8_RHIST)

HSP 1 Score: 119 bits (298), Expect = 2.220e-24
Identity = 82/263 (31.18%), Postives = 142/263 (53.99%), Query Frame = 0
Query:  245 FSGQWEAWLIVDNREHEFMS----VQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEG-NLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASL---------------------LEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALE 481
            F  +++  L+VD+RE +        + +L  KGI+C TR + LGD++WIAR+++ P+ E+ L Y+VERK   DL SSI DGR+ EQK RLK SG  + +Y++E  N    E+    A++TA+ ++Q   G+ + + +S+ +T+D+L    + I  +                     L+ +CR+ A        ++ +E  A L   ++Y  Y Q  AK  GST++ ++   M+    G +A RA A+++ + +P  L+ A +
Sbjct:  556 FPHEYDIVLVVDSREIQMKGNRDYFEKNLTAKGIQCITRSMDLGDVIWIARKKESPSEELFLDYVVERKRLDDLVSSIKDGRFTEQKMRLKRSGAEKIMYIIEEYNREEAERFGAQAIQTAMSATQIIEGIFLKRTNSIDETIDYLVSATKLIQKIYQNTTLYSIPGHIITRQNYLELKAACRQKA--------KKSNEKSAYL---VSYSLYNQLNAKN-GSTSLHEIYLKMLMTIRGVNAERALALMKVYPTPKSLLEAFK 806          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7R8_9PHAE0.000e+093.57ERCC4 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CKB8_9STRA1.250e-5541.91Restriction endonuclease type II-like protein n=1 ... [more]
A0A7S3XK47_HETAK9.970e-3137.96Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9UCP7_9STRA6.900e-2744.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9DDT9_9STRA4.950e-2634.21ERCC4 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A067BND5_SAPPC8.210e-2537.40ERCC4 domain-containing protein n=1 Tax=Saprolegni... [more]
UPI001EB094969.620e-2533.56crossover junction endonuclease MUS81-like n=2 Tax... [more]
A0A1V9ZBA3_9STRA1.920e-2436.99Crossover junction endonuclease MUS81-like protein... [more]
A0A067CHT1_SAPPC2.120e-2437.80ERCC4 domain-containing protein n=1 Tax=Saprolegni... [more]
A0A367J7A8_RHIST2.220e-2431.18Crossover junction endonuclease mus81 (Fragment) n... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006166ERCC4 domainSMARTSM00891ERCC4_2coord: 252..346
e-value: 1.0E-23
score: 94.8
IPR006166ERCC4 domainPFAMPF02732ERCC4coord: 255..386
e-value: 5.9E-24
score: 85.0
IPR027421DNA polymerase lambda lyase domain superfamilyGENE3D1.10.150.110coord: 51..113
e-value: 7.2E-7
score: 31.3
IPR027421DNA polymerase lambda lyase domain superfamilySUPERFAMILY47802DNA polymerase beta, N-terminal domain-likecoord: 55..109
NoneNo IPR availableGENE3D3.40.50.10130coord: 278..457
e-value: 7.0E-41
score: 142.1
NoneNo IPR availablePANTHERPTHR13451CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81coord: 67..149
coord: 147..496
IPR011335Restriction endonuclease type II-likeSUPERFAMILY52980Restriction endonuclease-likecoord: 249..391

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12209contigEcto-sp13_S_contig12209:100..4285 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12209.1859.1mRNA_Ecto-sp13_S_contig12209.1859.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12209 100..4699 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12209.1859.1 ID=prot_Ecto-sp13_S_contig12209.1859.1|Name=mRNA_Ecto-sp13_S_contig12209.1859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=592bp
MAGRGRGGRFGGWGGNSRGKSVASGRGGSDASALARVLNTADCCACVSNG
PLLVELKSLDEECLRTGKTKLRHGLMRAMKSLKRYPLPITTEKEACALEG
VGSFTARRMLRGLPPAGPEPDNSMGVLRRTDEENIEPSGSSSSRGGGPRK
SRNISTGTSSVTNAGAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLA
SNFAALRGGGGQTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFSGQWE
AWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEV
LLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQE
QLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSC
RRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGA
MVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIADNDAARMKRA
DALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDNVDDEGAGASAGGVGVA
GPPTAAGSCGRRGHSSADLLVGGPYCVDGWEVEPMNQDDPY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006166ERCC4_domain
IPR027421DNA_pol_lamdba_lyase_dom_sf
IPR011335Restrct_endonuc-II-like