mRNA_Ecto-sp13_S_contig12209.1859.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12209.1859.1
Unique NamemRNA_Ecto-sp13_S_contig12209.1859.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE)

HSP 1 Score: 1044 bits (2699), Expect = 0.000e+0
Identity = 553/591 (93.57%), Postives = 564/591 (95.43%), Query Frame = 1
Query:    1 MAGRGRGGRFGGWGGNSRGKSVASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGKTKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEPDNSMGVLRRTDEENIEPSGSSSSRGGGPRKSRNISTGTSSVTNAGAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGGGQTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIADNDAARMKRADALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDNVDDEGAGASAGGVGVAGPPTAAGSCGRRGHSSADLLVGGPYCVDGWEVEPMNQDDPY 1773
            MAGRGRGGRFGG  GNS GK VASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGK KLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEP+NS GV RRTDEENIEPSGSSSSRGGG RKS N STGTSSVTNA AGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGG +TTPDVTPKRPTSRAR+EEA GET RSSKAPSFFSGQWEAWL+VDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR+RDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCD LRDTV+FLARTHRHIASLLE SCRR AGL PV GSRECS G AMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIA +DAARMKRADALLG LVCSGGAGTNKLPQPLR+LLCRLFLGD+VDDEGAGASAGGVG AGPPTAAG  GRRGHS+ADL VGGPYCVDGW+VEPMNQDDPY
Sbjct:    1 MAGRGRGGRFGGQDGNSHGKIVASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEPENSSGV-RRTDEENIEPSGSSSSRGGGARKSSNKSTGTSSVTNADAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGGEETTPDVTPKRPTSRARKEEASGETARSSKAPSFFSGQWEAWLVVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARKRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDGLRDTVNFLARTHRHIASLLELSCRREAGLSPVRGSRECSGGRAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIAGDDAARMKRADALLGGLVCSGGAGTNKLPQPLRRLLCRLFLGDSVDDEGAGASAGGVGAAGPPTAAGGYGRRGHSNADLSVGGPYCVDGWDVEPMNQDDPY 590          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A836CKB8_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.150e-54
Identity = 127/303 (41.91%), Postives = 164/303 (54.13%), Query Frame = 1
Query:  727 SFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPT----SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGD-------GIADNDAARMKRADALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDN 1602
            SF  G W   LI D RE    + Q+++L   + CE R LPLGDMLW+AR  D  +     EVLLGYIVERKTASDL SS++DGR+ EQK R+   GL R IYLVEG + H  +L PA LRTA+  +QA  G+ V+   ++ ++V  L R HRHIA+ LE +CR              S  G  +RP M+  +Y   C K      VR V G  +RQ  GCSAARA AI+  + +PL  MLA+E A   +       GI     ARM  A                KL +PL+  LC+L+  D+
Sbjct:    7 SFAGGIWTPVLIFDTREEHAQASQAAVLNANMLCEVRSLPLGDMLWVARNMDRQSPSYLQEVLLGYIVERKTASDLGSSMVDGRFHEQKHRMARHGLGRVIYLVEGPITHTTRLTPAHLRTAMAHTQAQDGMTVLWTANVTESVAHLQRVHRHIAASLEAACR----------GITASAPGTGVRPIMSMDQYRAQCGKGKDGD-VRYVFGCQLRQVYGCSAARAAAILNEYPTPLDFMLAMEAAGESERCLELLAGIKGEPGARMAEA----------------KLTKPLQAALCKLYADDD 282          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A7S3XK47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK47_HETAK)

HSP 1 Score: 131 bits (330), Expect = 2.110e-30
Identity = 93/245 (37.96%), Postives = 127/245 (51.84%), Query Frame = 1
Query:  793 VQSSLLQKGIRCETRQLPLGDMLWIARRR------DDPTSEVL--------------------------LGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLM 1431
            VQ+ LL  G+ CE  QL +GDM+W AR R      D P ++ L                          LG++VERKTA DLA SIIDGRY EQK RLK SGL +  YLVEG+L+ Q+ L   +LRTA+ S+    G +V +C +L ++V +LARTH  +A  L  +        P+   +      A+L P MTY  Y   C K      V+ + G  ++Q PG S  + +AI+  F +P  LM
Sbjct:    2 VQAKLLAVGVACEVGQLAVGDMVWAARWRRPGWHADIPLTQTLNQPQKKKSKSTATILENLHKNEELFVLGFVVERKTAEDLAKSIIDGRYAEQKVRLKKSGLSKVTYLVEGSLSGQDVLPTKSLRTAMASTLIQHGFSVQRCANLDESVRWLARTHHQVARQLGYAVAAAQSGDPLDSFK------AVL-PVMTYRHYHDQCGKLKAQK-VQDIFGMQLKQFPGMSVGKIQAILERFPTPQRLM 238          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A7R9UCP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP7_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.620e-26
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 1
Query:  697 GETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR-RRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLL 1188
            GE    S+ P          L+ D+RE    +VQS LLQ+G+ CE R L LGDM+WIA+ RR D   E +L +I+ERK+A+DLA SIIDGRY EQK RL+ SG+    YLVEG  + QE+L   ALRTA+  ++   G  V+  +++  + + L R H  I SL+
Sbjct:  418 GERRPDSRCPPVPFEDLSVILVQDHRETRKDAVQSHLLQRGVSCENRALHLGDMIWIAQDRRSDV--EYVLDFIIERKSAADLAESIIDGRYAEQKSRLRASGIGHVTYLVEGAASSQERLPKQALRTAMAETRVLPGFRVLHTNNIAQSAEELRRMHEQIKSLM 580          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A4D9DDT9_9STRA (ERCC4 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDT9_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.100e-25
Identity = 104/304 (34.21%), Postives = 145/304 (47.70%), Query Frame = 1
Query:  742 QWEAWLIVDNREHEFM-SVQSSLLQKGIRCETRQLPLGDMLWIARRRDD------------------------------PTSE---VLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSG--LRRRIYLVEGNLNH-QEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHI----ASLLEQSCRRG-----AGLWP-------VGGSRECSE-----GGAMLRPA---MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIA 1470
            +WE   ++D  EHE   S++++LLQ GIRCE R L L D+LW+ARRR +                              PT E   ++L Y++ERKT  DLASSI DGRY EQK R+   G  + R  YLVEG L    + + PAALRTAL+S+Q   G+ V+Q  SL  T+  L R H  I    A  L+ +C          L P       +  S   SE       A   PA   +   EY   C K  G+ +VR +  A +      S A+++A+V A+ +P  L  A++     + +A
Sbjct:  350 EWEVVALLDRVEHENNPSIEATLLQAGIRCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAAGIAVDPGDAGGLREGGHPTEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDMIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDLLPATESFDGLAQSERLSEYLQKHSKAFPLPASRIIRLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLARAMQSITEEEAVA 653          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A067BND5_SAPPC (ERCC4 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BND5_SAPPC)

HSP 1 Score: 116 bits (291), Expect = 1.380e-24
Identity = 95/254 (37.40%), Postives = 127/254 (50.00%), Query Frame = 1
Query:  742 QWEAWLIVDNREHEFMSVQS----SLLQKGIRCETRQLPLGDMLWIARRRDDPT-------SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWP----VGGSRECSEGGAMLRPA--MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAA 1452
            +WE  L++D+RE    S +S     LL+ G+ CE R L LGDM+WIARR   PT        E +L  IVERK  SDLA SIID RY EQK+RL  +GLR  +YL+EG+L  +  L   AL TAL  +Q      V    S  +TV FL+  H H         +      P    +G    C      L P    ++GE+ +   K+A  TT  ++   M+ Q PG SA RA  +  A  + L L    ++AA
Sbjct:   84 EWEIVLLLDHREMVSRSNKSVFERKLLEAGVTCEVRGLHLGDMMWIARRHR-PTFGGRAIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAGLRYVVYLLEGSLAVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKVRNAAPPTAASIGRLPACLRDFTQLIPTTWQSFGEFNETFRKKAAPTT-GELYQMMLMQVPGISATRARDLGAAHPTFLSLWQETQKAA 335          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: UPI001EB09496 (crossover junction endonuclease MUS81-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB09496)

HSP 1 Score: 120 bits (301), Expect = 2.250e-24
Identity = 100/298 (33.56%), Postives = 150/298 (50.34%), Query Frame = 1
Query:  634 QTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFS---GQWEAWLIVDNREHEFMSVQSS------LLQKGIRCETRQLPLGDMLWIARRRDDPTS---------EVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVE--GNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLE----QSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAAS 1455
            +T PD+TP    S A  + +   +  SS  P  FS   G ++  L VDNRE    S   S      L++ G+ C+ R+L +GDMLWIAR R  P           E++L +I+ERK   DL SS+IDGR+ EQK RLK SG+   IYL+E  G+L H   +A   ++ A+V++Q   G  + +   +++TV +L    R++ S       Q+C     L  + GS    E   +L     +  YA   +K     TVR++ G  + Q  G SA +A+AI   + +P  +  A +R  S
Sbjct:  562 ETLPDITPA--FSAAGSQASSVTSAGSSLPPPDFSLTPGSFDVVLCVDNREFYGGSKSQSKTLLPELIKNGVECDLRELQIGDMLWIARERLQPQPGQLQRPKGRELVLDFIIERKRMDDLVSSMIDGRFREQKFRLKRSGIANAIYLIEDYGSLQHFS-IAEDRIKQAIVNTQVIDGFKMKRTSGVKETVAYLTVMTRYLQSFYRTKSLQACTPEM-LRELDGSFHIEESEKLLTTFQHF-NYASVKSK---DLTVRELFGKQLIQLHGMSADKAKAITDRYPTPTSIFRAYDRCIS 851          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A1V9ZBA3_9STRA (Crossover junction endonuclease MUS81-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBA3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.640e-24
Identity = 91/246 (36.99%), Postives = 124/246 (50.41%), Query Frame = 1
Query:  742 QWEAWLIVDNRE----HEFMSVQSSLLQKGIRCETRQLPLGDMLWIARR-RDDP----TSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQS--CRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCA--KRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLAL 1440
            +WE  L++D+RE          +  LL+  + CE R L LGDMLWIARR R D       E +L  +VERK  +DLA SIID RY EQK+RL  SGLR  +YLVEG+L+ +  +  A LRTAL  +Q      V    +  +TV FLA  H H+     +S  CR  A     G               M++  YA   A  ++  + +  ++   M+ Q PG SA RA+A+  A  +   L  AL
Sbjct:  264 EWEVVLLLDHREMLSRRNPAVFERKLLEAHVTCEVRALHLGDMLWIARRGRQDQGRTVVEEFVLDVVVERKAVTDLALSIIDKRYTEQKQRLAESGLRYVVYLVEGSLSTETAIGAAGLRTALTRTQVLNNYLVHHAATADETVAFLAALHWHVVGAFRESYRCRNCAPPTSAGPPPPAPLVDFTQLLPMSWQPYADFNATFRKKAAPSAGELYQMMLMQIPGISAGRAQALGTAHPTFASLWAAL 509          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A067CHT1_SAPPC (ERCC4 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CHT1_SAPPC)

HSP 1 Score: 118 bits (295), Expect = 4.040e-24
Identity = 96/254 (37.80%), Postives = 127/254 (50.00%), Query Frame = 1
Query:  742 QWEAWLIVDNREHEFMSVQS----SLLQKGIRCETRQLPLGDMLWIARRRDDPT-------SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGS----RECSEGGAMLRPA--MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAA 1452
            +WE  L++D+RE    S +S     LL+ G+ CE R L LGDM+WIARR   PT        E +L  IVERK  SDLA SIID RY EQK+RL  +GLR  +YL+EG+L  +  L   AL TAL  +Q      V    S  +TV FL+  H H         +      PV  S      C      L P    ++GE+ +   K+A  TT  ++   M+ Q PG SA RA  +  A  + L L    ++AA
Sbjct:  275 EWEIVLLLDHREMVSRSSKSVFERKLLEAGVTCEVRGLHLGDMMWIARRHR-PTFGGRPIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAGLRYVVYLLEGSLAVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKVRNAAPPVAASIGRPPACLRDFTQLIPTTWQSFGEFNETFRKKAAPTT-GELYQMMLMQVPGISATRARDLGAAHPTFLSLWQETQKAA 526          
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A367J7A8_RHIST (Crossover junction endonuclease mus81 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J7A8_RHIST)

HSP 1 Score: 119 bits (298), Expect = 5.090e-24
Identity = 82/263 (31.18%), Postives = 142/263 (53.99%), Query Frame = 1
Query:  733 FSGQWEAWLIVDNREHEFMS----VQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEG-NLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASL---------------------LEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALE 1443
            F  +++  L+VD+RE +        + +L  KGI+C TR + LGD++WIAR+++ P+ E+ L Y+VERK   DL SSI DGR+ EQK RLK SG  + +Y++E  N    E+    A++TA+ ++Q   G+ + + +S+ +T+D+L    + I  +                     L+ +CR+ A        ++ +E  A L   ++Y  Y Q  AK  GST++ ++   M+    G +A RA A+++ + +P  L+ A +
Sbjct:  556 FPHEYDIVLVVDSREIQMKGNRDYFEKNLTAKGIQCITRSMDLGDVIWIARKKESPSEELFLDYVVERKRLDDLVSSIKDGRFTEQKMRLKRSGAEKIMYIIEEYNREEAERFGAQAIQTAMSATQIIEGIFLKRTNSIDETIDYLVSATKLIQKIYQNTTLYSIPGHIITRQNYLELKAACRQKA--------KKSNEKSAYL---VSYSLYNQLNAKN-GSTSLHEIYLKMLMTIRGVNAERALALMKVYPTPKSLLEAFK 806          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7R8_9PHAE0.000e+093.57ERCC4 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CKB8_9STRA1.150e-5441.91Restriction endonuclease type II-like protein n=1 ... [more]
A0A7S3XK47_HETAK2.110e-3037.96Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9UCP7_9STRA1.620e-2644.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9DDT9_9STRA1.100e-2534.21ERCC4 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A067BND5_SAPPC1.380e-2437.40ERCC4 domain-containing protein n=1 Tax=Saprolegni... [more]
UPI001EB094962.250e-2433.56crossover junction endonuclease MUS81-like n=2 Tax... [more]
A0A1V9ZBA3_9STRA3.640e-2436.99Crossover junction endonuclease MUS81-like protein... [more]
A0A067CHT1_SAPPC4.040e-2437.80ERCC4 domain-containing protein n=1 Tax=Saprolegni... [more]
A0A367J7A8_RHIST5.090e-2431.18Crossover junction endonuclease mus81 (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12209contigEcto-sp13_S_contig12209:100..4699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score988.0
Seed ortholog evalue1.9e-285
Seed eggNOG ortholog2880.D8LQM7
Preferred nameMus81
Model size2190
KEGG koko:K08991
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000793,GO:0000794,GO:0002164,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007095,GO:0007127,GO:0007129,GO:0007131,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009791,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0031297,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0040019,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045132,GO:0045143,GO:0045786,GO:0045930,GO:0045995,GO:0046483,GO:0048256,GO:0048257,GO:0048285,GO:0048476,GO:0048518,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051026,GO:0051094,GO:0051239,GO:0051240,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047,GO:2000026
Exons4
EggNOG free text desc.resolution of meiotic recombination intermediates
EggNOG OGsCOG1948@1,KOG2379@2759
Ec32 ortholog descriptionERCC4 domain containing protein
Ec32 orthologEc-10_006250.1
Cds size1776
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.9746535-CDS-Ecto-sp13_S_contig12209:99..3141681462648.9746535-CDS-Ecto-sp13_S_contig12209:99..314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12209 100..314 +
1681462648.9871736-CDS-Ecto-sp13_S_contig12209:1789..23721681462648.9871736-CDS-Ecto-sp13_S_contig12209:1789..2372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12209 1790..2372 +
1681462648.9986413-CDS-Ecto-sp13_S_contig12209:2669..28361681462648.9986413-CDS-Ecto-sp13_S_contig12209:2669..2836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12209 2670..2836 +
1681462649.0068064-CDS-Ecto-sp13_S_contig12209:3474..42851681462649.0068064-CDS-Ecto-sp13_S_contig12209:3474..4285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12209 3475..4285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.0241857-UTR-Ecto-sp13_S_contig12209:4285..46991681462649.0241857-UTR-Ecto-sp13_S_contig12209:4285..4699Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12209 4286..4699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12209.1859.1prot_Ecto-sp13_S_contig12209.1859.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12209 100..4285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12209.1859.1

>prot_Ecto-sp13_S_contig12209.1859.1 ID=prot_Ecto-sp13_S_contig12209.1859.1|Name=mRNA_Ecto-sp13_S_contig12209.1859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=592bp
MAGRGRGGRFGGWGGNSRGKSVASGRGGSDASALARVLNTADCCACVSNG
PLLVELKSLDEECLRTGKTKLRHGLMRAMKSLKRYPLPITTEKEACALEG
VGSFTARRMLRGLPPAGPEPDNSMGVLRRTDEENIEPSGSSSSRGGGPRK
SRNISTGTSSVTNAGAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLA
SNFAALRGGGGQTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFSGQWE
AWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEV
LLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQE
QLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSC
RRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGA
MVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIADNDAARMKRA
DALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDNVDDEGAGASAGGVGVA
GPPTAAGSCGRRGHSSADLLVGGPYCVDGWEVEPMNQDDPY*
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mRNA from alignment at Ecto-sp13_S_contig12209:100..4699+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12209.1859.1 ID=mRNA_Ecto-sp13_S_contig12209.1859.1|Name=mRNA_Ecto-sp13_S_contig12209.1859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12209:100..4699+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGAAGAGGACGAGGGGGGAGGTTCGGGGGTTGGGGTGGGAACTC CCGTGGAAAGAGTGTGGCCAGCGGTCGTGGCGGTAGCGATGCTTCTGCGC TAGCACGAGTGCTCAACACGGCGGACTGCTGTGCGTGTGTGTCGAACGGT CCTCTCCTGGTTGAGCTCAAGAGCCTCGATGAGGAGTGCTTGAGGACCGG CAAGACGAAGCTCAGGTACGTCCTTCCTTGGCACCTACACACTTAAGAAG CTGCTGCTTTGTGGGGTAGATTGCTGGTCTTTCGGAGGTTCACATTGTGG TTTGCACAACGTGTTCGTTGTTCTGTCTGACTGCTGTTGCTGTAAACCGC CGTTGGTCCATTTCAAGCACAGCAGGTGAACTGGCATGTAGAGATGAACA CCGCAGGCCAGCGGTCACAAGGTGGGCTATGCTGTGCGATGCTGTTCCTG TGTGTGTTTGTGCTGCAACAAAGATAACTTGGTCGTGAAGCCCCCACGCC ATGCTGATCACATCGATTGTTCCATGATACACGAGTCCTGATAGGCTGCT GTAGTGTGTAAATCACGATCGTTGTTCTTGTCTCAACAAGTTCAACCCGA CAAAGCCTGCCCTCGCTGTCGAACTGACGGGTACCTTACAAATGGTGAAA CGGAACGGTTTCCCTGACCTGGGGTAGTAGAGCAATGCCCATGTGGTTTC GGCGCGTCATTTGAGATGATATTGATGGCAATTTTTTTCGCGCAAATTTT GCAAATTTGCAAAGTTGCCCATGTCCACACGGCCTCAGCGGGAAACACGT GCATACCATACTCGAGAACTGCAAAACTACGTGTAGTCTACACCGGTACC ATGCAATACCGAAAGATTTTACTATGTAGAATAAACATTGTCAGCGCTTC GTTTTTCCGCCCGAAATCTAGCGATTCCAAGGCGAAGGTCATTGCTGGTG TGCTGGCCGTGTGTACGTGTGCAAGACAGACAGGCAGACAAATGCATTCC AAGCTGCGCTATCGGGGCTCGAGATATGTATGGTAGCAGTTGAGAGGTCG AGAATCAAGGAGAATGAAGAAGGACTTCTTCGTACTCCGTGCTAACACCC AGATCTACCAATCGAATTGAAAATTGAGAGCTAACTTCTGTTTGGTGAGT CGGCGCGTATGGTTCGTTTGTCACGCTCGCTGGCTCTTGTCGAGAGCTTT TCTGCTCAAAGGAGTAACTCAAGTTCCTTATGTTGATACGGGGAGAGAGA CGCGCAAGGCAGAGAGCCTCGCACGTCAAGACCATCACACTCATCGCATC CACCCCACGTAGCCCCCGGAGATCTCGAAGATCCATGTTTGCCGAGTACA CACAAAGAGCAACATTTTCCGAACAGCGAGAGGAGGCAGTGCGGCGTGGC GAGTTTTCGAGATAAATATATGAATCTGAATTCCGGAAAGAAATGATGTT CTCGCAGAGCTAGCTCGCGCGAAGGACTGGGAGTACGGTAGCTGAGAGGC CGAGAAAGGATTTGAGGCTTGCTGGACAGAGAGCGGGAGAAGACATCAAA AGAAGGTTGCGTACCGTGGTTTTCCTTTGCGCGTAAGGAGTTGCTGCCCG ACGTACAGAGCATCCACCGAGACTCATTGGCGGTGACATCCAACCCTCTC GTACGACGCGTCGATTCGCCTGCTTACGCATTCCCTGCAGGCACGGGCTG ATGCGGGCCATGAAGTCTCTGAAGCGTTACCCCCTCCCGATCACCACAGA GAAGGAGGCGTGCGCGCTGGAAGGGGTAGGGAGCTTCACCGCCCGCCGAA TGCTGCGTGGCTTGCCGCCGGCCGGACCGGAACCCGACAACAGCATGGGT GTCCTACGTAGGACCGACGAAGAAAATATCGAACCCTCCGGAAGCTCGTC TTCCCGGGGAGGAGGTCCTAGAAAATCCAGGAACATTAGTACCGGAACCT CGTCTGTGACGAATGCTGGTGCTGGTAGCCGTCTTCCTTCCGACACCAAC TCGCTGCTCCGCATGAACCTCCGCGTGGGCAGCAGCGCGACGACGACCAC CGGCGGTCGGCCCCTGTCGCTGGCTTCTAATTTCGCCGCGCTTCGCGGTG GCGGCGGACAGACAACGCCTGACGTTACGCCGAAGCGGCCGACCTCGCGC GCGAGGAGGGAAGAGGCGGGTGGCGAGACCGTGCGCTCGTCGAAGGCGCC TAGTTTTTTCAGCGGGCAGTGGGAGGCGTGGCTTATCGTTGACAATCGCG AGCACGAGTTCATGTCTGTTCAGGTACGGGCATGGGAGGGTGGGGCGCGG AGGGGGGGGGGCGTACTCTTATGTTTTGCATGACTTCGCGGGTAGACCAT TGGCCACGCGTACTCGAGAGGACGAATCATTTTTCCTGTCTCAATGTTCT CTTGAGGGATGCGTAGAAGTAGACCTTTTGACGCGGTTCTATTATTGTGC TCGCGGGTAAATGTAAACATGTTGTACTCCGCTGCTGTCCCATCTCCCAA GGGTGGGAGCGAACACCAGCAAAATGATCGAAACCTGATTGTCCCGCTTT GCCTGCCGCGTCGATCTCAGTCTTCGCTTCTGCAGAAGGGAATACGCTGC GAAACCAGACAGCTACCGCTCGGCGACATGCTCTGGATAGCTAGAAGGAG GGACGACCCGACGTCGGAGGTGCTGCTGGGCTACATCGTGGAGCGGAAAA CGGCCTCGGATCTGGCCAGCAGCATCATCGACGGCCGGTAAGCCAAGGCT TGGTGGCGTCCACCCTTCCCTCCTCCCAACGTTTCGCCGTTTCAATGCCC GAATGTGTTTTTGTGTGTGTTTCTGGGTGCAGTTTACTCTTTTACGTACT TTCCCTTGTTTTTAGGTACTTGACCTGTTTCGTCGTTTCGTGACCCGCTT GGATTGTGACGTTATTTAATTGATAGTTCTCAGGGCGAGGCGTGCGTGTG ACTGTTGCGTCGTTGCAGAACATAGACGAGTTCTGGACCCCGATACTGAC CCCCCCCCCCCAAGCTTTTGCTATGGCGCCCTCTACACTCGTCAACACAC AAACCTCCTACTTATGAACCAATGATAGGGCATCATTCCCCGCACCACCC CCACATGGGTTCTTGGCCGAAATGATGACGATCCGCGTGCTTTTGCGCAC CGACACTCTTCTCTTCTGTATTTGCCCCCATCCCACCCGTAACTGTCCTA CATGTCTACATTTACATATGCTTCCTCTTGGCCTGCCGGCTCTCCCCCTC GCCCTCCCTCACGCTTTCTCTCTCTCCCTATGCCATGCCTTCTTGTCTCT CTCTTACTCTCGTTCTTTTCTTTTGGGGTGGGTTGAATCGTATCCATTCC ATCTCGGGTCCGCCTGTCGGATCAGCTACGAAGAGCAGAAGCGGCGCCTC AAGCTGAGCGGCCTCCGGCGGCGCATCTACCTGGTGGAAGGGAACCTGAA CCACCAGGAGCAGCTTGCCCCCGCCGCCCTTAGGACAGCCCTGGTCTCGT CGCAGGCCTGTGGGGGCCTTGCCGTGGTGCAGTGCGACAGCCTGCGCGAC ACCGTAGACTTCCTCGCGCGGACTCACCGCCACATCGCGTCCCTCCTAGA ACAATCCTGCCGACGCGGGGCAGGGCTTTGGCCCGTCGGGGGGTCCCGCG AGTGCTCGGAGGGGGGGGCGATGCTGAGGCCGGCGATGACCTACGGGGAG TACGCCCAGGGCTGCGCGAAGCGTGCGGGCTCCACGACGGTGAGGCAGGT GCTGGGAGCCATGGTGCGGCAGGCTCCCGGGTGCAGCGCGGCGAGGGCGG AGGCTATCGTCCGAGCCTTCGATTCGCCGCTGGGGCTGATGCTGGCCCTC GAGCGCGCGGCTAGCGGGGACGGTATAGCTGACAATGATGCCGCCAGGAT GAAGAGGGCGGATGCCTTGTTGGGCGATTTGGTGTGCAGCGGAGGGGCCG GTACGAACAAACTCCCTCAACCGTTACGACAATTGCTGTGCCGGTTGTTC CTCGGGGATAATGTGGACGACGAGGGGGCCGGGGCAAGCGCTGGTGGGGT GGGGGTGGCGGGGCCGCCAACAGCGGCGGGTAGTTGTGGTCGTCGGGGGC ACAGCAGTGCCGACTTGTTGGTGGGGGGTCCCTACTGTGTTGATGGCTGG GAAGTAGAGCCCATGAATCAAGATGACCCGTATTAGACACTAAGAAGCGC GTGGAGTTGTGCATCATTTTCGGTCATCCAGTCATCCCGCTAAATAACCC GAAGCACGGCACTCACTTGCTTTGCTCCCTGACTGTATTTACTCGTGTGC CTGTGCATACATACCTTCGCCTTTTCACGACGGTTTTCTGACCTAATTGT GGTGCGATGTGTACGTGCCGTGTGGTGGTGTGTCCTGCTCTAGATGTAAG CGTATCGCACGAGGCTACTGCGAAGTATTCAGCAAGCATGCTTCCCGCAA GCATTCCGCGGCTGCATAACAGGATTAGGCACGTCAGCGATACAACGAAA AGTTTTCCGCCTGGAGGAAGTGGTGGGAACATCGGCGAGAAGTAGACAGT CATGTGTTGAGCTCAATGCCACCCACCTGCCCAGCAATATTAATTTTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12209:100..4699+

>mRNA_Ecto-sp13_S_contig12209.1859.1 ID=mRNA_Ecto-sp13_S_contig12209.1859.1|Name=mRNA_Ecto-sp13_S_contig12209.1859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12209:100..4699+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGGAAGAGGACGAGGGGGGAGGTTCGGGGGTTGGGGTGGGAACTC
CCGTGGAAAGAGTGTGGCCAGCGGTCGTGGCGGTAGCGATGCTTCTGCGC
TAGCACGAGTGCTCAACACGGCGGACTGCTGTGCGTGTGTGTCGAACGGT
CCTCTCCTGGTTGAGCTCAAGAGCCTCGATGAGGAGTGCTTGAGGACCGG
CAAGACGAAGCTCAGGCACGGGCTGATGCGGGCCATGAAGTCTCTGAAGC
GTTACCCCCTCCCGATCACCACAGAGAAGGAGGCGTGCGCGCTGGAAGGG
GTAGGGAGCTTCACCGCCCGCCGAATGCTGCGTGGCTTGCCGCCGGCCGG
ACCGGAACCCGACAACAGCATGGGTGTCCTACGTAGGACCGACGAAGAAA
ATATCGAACCCTCCGGAAGCTCGTCTTCCCGGGGAGGAGGTCCTAGAAAA
TCCAGGAACATTAGTACCGGAACCTCGTCTGTGACGAATGCTGGTGCTGG
TAGCCGTCTTCCTTCCGACACCAACTCGCTGCTCCGCATGAACCTCCGCG
TGGGCAGCAGCGCGACGACGACCACCGGCGGTCGGCCCCTGTCGCTGGCT
TCTAATTTCGCCGCGCTTCGCGGTGGCGGCGGACAGACAACGCCTGACGT
TACGCCGAAGCGGCCGACCTCGCGCGCGAGGAGGGAAGAGGCGGGTGGCG
AGACCGTGCGCTCGTCGAAGGCGCCTAGTTTTTTCAGCGGGCAGTGGGAG
GCGTGGCTTATCGTTGACAATCGCGAGCACGAGTTCATGTCTGTTCAGTC
TTCGCTTCTGCAGAAGGGAATACGCTGCGAAACCAGACAGCTACCGCTCG
GCGACATGCTCTGGATAGCTAGAAGGAGGGACGACCCGACGTCGGAGGTG
CTGCTGGGCTACATCGTGGAGCGGAAAACGGCCTCGGATCTGGCCAGCAG
CATCATCGACGGCCGCTACGAAGAGCAGAAGCGGCGCCTCAAGCTGAGCG
GCCTCCGGCGGCGCATCTACCTGGTGGAAGGGAACCTGAACCACCAGGAG
CAGCTTGCCCCCGCCGCCCTTAGGACAGCCCTGGTCTCGTCGCAGGCCTG
TGGGGGCCTTGCCGTGGTGCAGTGCGACAGCCTGCGCGACACCGTAGACT
TCCTCGCGCGGACTCACCGCCACATCGCGTCCCTCCTAGAACAATCCTGC
CGACGCGGGGCAGGGCTTTGGCCCGTCGGGGGGTCCCGCGAGTGCTCGGA
GGGGGGGGCGATGCTGAGGCCGGCGATGACCTACGGGGAGTACGCCCAGG
GCTGCGCGAAGCGTGCGGGCTCCACGACGGTGAGGCAGGTGCTGGGAGCC
ATGGTGCGGCAGGCTCCCGGGTGCAGCGCGGCGAGGGCGGAGGCTATCGT
CCGAGCCTTCGATTCGCCGCTGGGGCTGATGCTGGCCCTCGAGCGCGCGG
CTAGCGGGGACGGTATAGCTGACAATGATGCCGCCAGGATGAAGAGGGCG
GATGCCTTGTTGGGCGATTTGGTGTGCAGCGGAGGGGCCGGTACGAACAA
ACTCCCTCAACCGTTACGACAATTGCTGTGCCGGTTGTTCCTCGGGGATA
ATGTGGACGACGAGGGGGCCGGGGCAAGCGCTGGTGGGGTGGGGGTGGCG
GGGCCGCCAACAGCGGCGGGTAGTTGTGGTCGTCGGGGGCACAGCAGTGC
CGACTTGTTGGTGGGGGGTCCCTACTGTGTTGATGGCTGGGAAGTAGAGC
CCATGAATCAAGATGACCCGTATTAG
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