mRNA_Ecto-sp13_S_contig12209.1859.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A6H5L7R8_9PHAE (ERCC4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7R8_9PHAE) HSP 1 Score: 1044 bits (2699), Expect = 0.000e+0 Identity = 553/591 (93.57%), Postives = 564/591 (95.43%), Query Frame = 1
Query: 1 MAGRGRGGRFGGWGGNSRGKSVASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGKTKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEPDNSMGVLRRTDEENIEPSGSSSSRGGGPRKSRNISTGTSSVTNAGAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGGGQTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIADNDAARMKRADALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDNVDDEGAGASAGGVGVAGPPTAAGSCGRRGHSSADLLVGGPYCVDGWEVEPMNQDDPY 1773
MAGRGRGGRFGG GNS GK VASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGK KLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEP+NS GV RRTDEENIEPSGSSSSRGGG RKS N STGTSSVTNA AGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGG +TTPDVTPKRPTSRAR+EEA GET RSSKAPSFFSGQWEAWL+VDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR+RDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCD LRDTV+FLARTHRHIASLLE SCRR AGL PV GSRECS G AMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIA +DAARMKRADALLG LVCSGGAGTNKLPQPLR+LLCRLFLGD+VDDEGAGASAGGVG AGPPTAAG GRRGHS+ADL VGGPYCVDGW+VEPMNQDDPY
Sbjct: 1 MAGRGRGGRFGGQDGNSHGKIVASGRGGSDASALARVLNTADCCACVSNGPLLVELKSLDEECLRTGKVKLRHGLMRAMKSLKRYPLPITTEKEACALEGVGSFTARRMLRGLPPAGPEPENSSGV-RRTDEENIEPSGSSSSRGGGARKSSNKSTGTSSVTNADAGSRLPSDTNSLLRMNLRVGSSATTTTGGRPLSLASNFAALRGGGEETTPDVTPKRPTSRARKEEASGETARSSKAPSFFSGQWEAWLVVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARKRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDGLRDTVNFLARTHRHIASLLELSCRREAGLSPVRGSRECSGGRAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIAGDDAARMKRADALLGGLVCSGGAGTNKLPQPLRRLLCRLFLGDSVDDEGAGASAGGVGAAGPPTAAGGYGRRGHSNADLSVGGPYCVDGWDVEPMNQDDPY 590
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A836CKB8_9STRA (Restriction endonuclease type II-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKB8_9STRA) HSP 1 Score: 199 bits (505), Expect = 1.150e-54 Identity = 127/303 (41.91%), Postives = 164/303 (54.13%), Query Frame = 1
Query: 727 SFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIARRRDDPT----SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGD-------GIADNDAARMKRADALLGDLVCSGGAGTNKLPQPLRQLLCRLFLGDN 1602
SF G W LI D RE + Q+++L + CE R LPLGDMLW+AR D + EVLLGYIVERKTASDL SS++DGR+ EQK R+ GL R IYLVEG + H +L PA LRTA+ +QA G+ V+ ++ ++V L R HRHIA+ LE +CR S G +RP M+ +Y C K VR V G +RQ GCSAARA AI+ + +PL MLA+E A + GI ARM A KL +PL+ LC+L+ D+
Sbjct: 7 SFAGGIWTPVLIFDTREEHAQASQAAVLNANMLCEVRSLPLGDMLWVARNMDRQSPSYLQEVLLGYIVERKTASDLGSSMVDGRFHEQKHRMARHGLGRVIYLVEGPITHTTRLTPAHLRTAMAHTQAQDGMTVLWTANVTESVAHLQRVHRHIAASLEAACR----------GITASAPGTGVRPIMSMDQYRAQCGKGKDGD-VRYVFGCQLRQVYGCSAARAAAILNEYPTPLDFMLAMEAAGESERCLELLAGIKGEPGARMAEA----------------KLTKPLQAALCKLYADDD 282
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A7S3XK47_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK47_HETAK) HSP 1 Score: 131 bits (330), Expect = 2.110e-30 Identity = 93/245 (37.96%), Postives = 127/245 (51.84%), Query Frame = 1
Query: 793 VQSSLLQKGIRCETRQLPLGDMLWIARRR------DDPTSEVL--------------------------LGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLM 1431
VQ+ LL G+ CE QL +GDM+W AR R D P ++ L LG++VERKTA DLA SIIDGRY EQK RLK SGL + YLVEG+L+ Q+ L +LRTA+ S+ G +V +C +L ++V +LARTH +A L + P+ + A+L P MTY Y C K V+ + G ++Q PG S + +AI+ F +P LM
Sbjct: 2 VQAKLLAVGVACEVGQLAVGDMVWAARWRRPGWHADIPLTQTLNQPQKKKSKSTATILENLHKNEELFVLGFVVERKTAEDLAKSIIDGRYAEQKVRLKKSGLSKVTYLVEGSLSGQDVLPTKSLRTAMASTLIQHGFSVQRCANLDESVRWLARTHHQVARQLGYAVAAAQSGDPLDSFK------AVL-PVMTYRHYHDQCGKLKAQK-VQDIFGMQLKQFPGMSVGKIQAILERFPTPQRLM 238
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A7R9UCP7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCP7_9STRA) HSP 1 Score: 126 bits (317), Expect = 1.620e-26 Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 1
Query: 697 GETVRSSKAPSFFSGQWEAWLIVDNREHEFMSVQSSLLQKGIRCETRQLPLGDMLWIAR-RRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLL 1188
GE S+ P L+ D+RE +VQS LLQ+G+ CE R L LGDM+WIA+ RR D E +L +I+ERK+A+DLA SIIDGRY EQK RL+ SG+ YLVEG + QE+L ALRTA+ ++ G V+ +++ + + L R H I SL+
Sbjct: 418 GERRPDSRCPPVPFEDLSVILVQDHRETRKDAVQSHLLQRGVSCENRALHLGDMIWIAQDRRSDV--EYVLDFIIERKSAADLAESIIDGRYAEQKSRLRASGIGHVTYLVEGAASSQERLPKQALRTAMAETRVLPGFRVLHTNNIAQSAEELRRMHEQIKSLM 580
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A4D9DDT9_9STRA (ERCC4 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDT9_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.100e-25 Identity = 104/304 (34.21%), Postives = 145/304 (47.70%), Query Frame = 1
Query: 742 QWEAWLIVDNREHEFM-SVQSSLLQKGIRCETRQLPLGDMLWIARRRDD------------------------------PTSE---VLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSG--LRRRIYLVEGNLNH-QEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHI----ASLLEQSCRRG-----AGLWP-------VGGSRECSE-----GGAMLRPA---MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAASGDGIA 1470
+WE ++D EHE S++++LLQ GIRCE R L L D+LW+ARRR + PT E ++L Y++ERKT DLASSI DGRY EQK R+ G + R YLVEG L + + PAALRTAL+S+Q G+ V+Q SL T+ L R H I A L+ +C L P + S SE A PA + EY C K G+ +VR + A + S A+++A+V A+ +P L A++ + +A
Sbjct: 350 EWEVVALLDRVEHENNPSIEATLLQAGIRCEVRVLRLADVLWVARRRAEGRLGGDGGGRAAAGIAVDPGDAGGLREGGHPTEEEEEIMLRYMIERKTVPDLASSIKDGRYREQKGRMLGVGREIDRAFYLVEGRLEQLNDMIRPAALRTALISTQVVHGMPVLQTASLDQTIALLQRMHTRISHEFAHFLQAACGHNRLNSEGDLLPATESFDGLAQSERLSEYLQKHSKAFPLPASRIIRLAEYQHLCRKTVGNLSVRAMFTAQLCAIDKVSEAKSKAVVNAYSTPSRLARAMQSITEEEAVA 653
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A067BND5_SAPPC (ERCC4 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BND5_SAPPC) HSP 1 Score: 116 bits (291), Expect = 1.380e-24 Identity = 95/254 (37.40%), Postives = 127/254 (50.00%), Query Frame = 1
Query: 742 QWEAWLIVDNREHEFMSVQS----SLLQKGIRCETRQLPLGDMLWIARRRDDPT-------SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWP----VGGSRECSEGGAMLRPA--MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAA 1452
+WE L++D+RE S +S LL+ G+ CE R L LGDM+WIARR PT E +L IVERK SDLA SIID RY EQK+RL +GLR +YL+EG+L + L AL TAL +Q V S +TV FL+ H H + P +G C L P ++GE+ + K+A TT ++ M+ Q PG SA RA + A + L L ++AA
Sbjct: 84 EWEIVLLLDHREMVSRSNKSVFERKLLEAGVTCEVRGLHLGDMMWIARRHR-PTFGGRAIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAGLRYVVYLLEGSLAVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKVRNAAPPTAASIGRLPACLRDFTQLIPTTWQSFGEFNETFRKKAAPTT-GELYQMMLMQVPGISATRARDLGAAHPTFLSLWQETQKAA 335
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: UPI001EB09496 (crossover junction endonuclease MUS81-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB09496) HSP 1 Score: 120 bits (301), Expect = 2.250e-24 Identity = 100/298 (33.56%), Postives = 150/298 (50.34%), Query Frame = 1
Query: 634 QTTPDVTPKRPTSRARREEAGGETVRSSKAPSFFS---GQWEAWLIVDNREHEFMSVQSS------LLQKGIRCETRQLPLGDMLWIARRRDDPTS---------EVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVE--GNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLE----QSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAAS 1455
+T PD+TP S A + + + SS P FS G ++ L VDNRE S S L++ G+ C+ R+L +GDMLWIAR R P E++L +I+ERK DL SS+IDGR+ EQK RLK SG+ IYL+E G+L H +A ++ A+V++Q G + + +++TV +L R++ S Q+C L + GS E +L + YA +K TVR++ G + Q G SA +A+AI + +P + A +R S
Sbjct: 562 ETLPDITPA--FSAAGSQASSVTSAGSSLPPPDFSLTPGSFDVVLCVDNREFYGGSKSQSKTLLPELIKNGVECDLRELQIGDMLWIARERLQPQPGQLQRPKGRELVLDFIIERKRMDDLVSSMIDGRFREQKFRLKRSGIANAIYLIEDYGSLQHFS-IAEDRIKQAIVNTQVIDGFKMKRTSGVKETVAYLTVMTRYLQSFYRTKSLQACTPEM-LRELDGSFHIEESEKLLTTFQHF-NYASVKSK---DLTVRELFGKQLIQLHGMSADKAKAITDRYPTPTSIFRAYDRCIS 851
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A1V9ZBA3_9STRA (Crossover junction endonuclease MUS81-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZBA3_9STRA) HSP 1 Score: 118 bits (295), Expect = 3.640e-24 Identity = 91/246 (36.99%), Postives = 124/246 (50.41%), Query Frame = 1
Query: 742 QWEAWLIVDNRE----HEFMSVQSSLLQKGIRCETRQLPLGDMLWIARR-RDDP----TSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQS--CRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCA--KRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLAL 1440
+WE L++D+RE + LL+ + CE R L LGDMLWIARR R D E +L +VERK +DLA SIID RY EQK+RL SGLR +YLVEG+L+ + + A LRTAL +Q V + +TV FLA H H+ +S CR A G M++ YA A ++ + + ++ M+ Q PG SA RA+A+ A + L AL
Sbjct: 264 EWEVVLLLDHREMLSRRNPAVFERKLLEAHVTCEVRALHLGDMLWIARRGRQDQGRTVVEEFVLDVVVERKAVTDLALSIIDKRYTEQKQRLAESGLRYVVYLVEGSLSTETAIGAAGLRTALTRTQVLNNYLVHHAATADETVAFLAALHWHVVGAFRESYRCRNCAPPTSAGPPPPAPLVDFTQLLPMSWQPYADFNATFRKKAAPSAGELYQMMLMQIPGISAGRAQALGTAHPTFASLWAAL 509
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A067CHT1_SAPPC (ERCC4 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CHT1_SAPPC) HSP 1 Score: 118 bits (295), Expect = 4.040e-24 Identity = 96/254 (37.80%), Postives = 127/254 (50.00%), Query Frame = 1
Query: 742 QWEAWLIVDNREHEFMSVQS----SLLQKGIRCETRQLPLGDMLWIARRRDDPT-------SEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEGNLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASLLEQSCRRGAGLWPVGGS----RECSEGGAMLRPA--MTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALERAA 1452
+WE L++D+RE S +S LL+ G+ CE R L LGDM+WIARR PT E +L IVERK SDLA SIID RY EQK+RL +GLR +YL+EG+L + L AL TAL +Q V S +TV FL+ H H + PV S C L P ++GE+ + K+A TT ++ M+ Q PG SA RA + A + L L ++AA
Sbjct: 275 EWEIVLLLDHREMVSRSSKSVFERKLLEAGVTCEVRGLHLGDMMWIARRHR-PTFGGRPIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAGLRYVVYLLEGSLAVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKVRNAAPPVAASIGRPPACLRDFTQLIPTTWQSFGEFNETFRKKAAPTT-GELYQMMLMQVPGISATRARDLGAAHPTFLSLWQETQKAA 526
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Match: A0A367J7A8_RHIST (Crossover junction endonuclease mus81 (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367J7A8_RHIST) HSP 1 Score: 119 bits (298), Expect = 5.090e-24 Identity = 82/263 (31.18%), Postives = 142/263 (53.99%), Query Frame = 1
Query: 733 FSGQWEAWLIVDNREHEFMS----VQSSLLQKGIRCETRQLPLGDMLWIARRRDDPTSEVLLGYIVERKTASDLASSIIDGRYEEQKRRLKLSGLRRRIYLVEG-NLNHQEQLAPAALRTALVSSQACGGLAVVQCDSLRDTVDFLARTHRHIASL---------------------LEQSCRRGAGLWPVGGSRECSEGGAMLRPAMTYGEYAQGCAKRAGSTTVRQVLGAMVRQAPGCSAARAEAIVRAFDSPLGLMLALE 1443
F +++ L+VD+RE + + +L KGI+C TR + LGD++WIAR+++ P+ E+ L Y+VERK DL SSI DGR+ EQK RLK SG + +Y++E N E+ A++TA+ ++Q G+ + + +S+ +T+D+L + I + L+ +CR+ A ++ +E A L ++Y Y Q AK GST++ ++ M+ G +A RA A+++ + +P L+ A +
Sbjct: 556 FPHEYDIVLVVDSREIQMKGNRDYFEKNLTAKGIQCITRSMDLGDVIWIARKKESPSEELFLDYVVERKRLDDLVSSIKDGRFTEQKMRLKRSGAEKIMYIIEEYNREEAERFGAQAIQTAMSATQIIEGIFLKRTNSIDETIDYLVSATKLIQKIYQNTTLYSIPGHIITRQNYLELKAACRQKA--------KKSNEKSAYL---VSYSLYNQLNAKN-GSTSLHEIYLKMLMTIRGVNAERALALMKVYPTPKSLLEAFK 806 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12209.1859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12209.1859.1 >prot_Ecto-sp13_S_contig12209.1859.1 ID=prot_Ecto-sp13_S_contig12209.1859.1|Name=mRNA_Ecto-sp13_S_contig12209.1859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=592bp MAGRGRGGRFGGWGGNSRGKSVASGRGGSDASALARVLNTADCCACVSNGback to top mRNA from alignment at Ecto-sp13_S_contig12209:100..4699+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12209.1859.1 ID=mRNA_Ecto-sp13_S_contig12209.1859.1|Name=mRNA_Ecto-sp13_S_contig12209.1859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4600bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12209:100..4699+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12209:100..4699+ >mRNA_Ecto-sp13_S_contig12209.1859.1 ID=mRNA_Ecto-sp13_S_contig12209.1859.1|Name=mRNA_Ecto-sp13_S_contig12209.1859.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1776bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12209:100..4699+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |