mRNA_Ecto-sp13_S_contig73807.18558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73807.18558.1
Unique NamemRNA_Ecto-sp13_S_contig73807.18558.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: A0A6H5KXR6_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.320e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQ 180
            GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQ
Sbjct:  952 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQ 1011          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: D7FNE8_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.320e-32
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQ 180
            GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQ
Sbjct: 1065 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQ 1124          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: A0A835YX58_9STRA (Calcium-independent phospholipase-like protein A2-gamma, C terminal part n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX58_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.430e-20
Identity = 39/60 (65.00%), Postives = 50/60 (83.33%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALKQ 180
            GR+P +VFD++VGTSTG I+A LAG++ FP+A+CE MYD+LI  IF K P GG+KLALKQ
Sbjct:   44 GREPAQVFDIVVGTSTGAIVAALAGLECFPLAQCEAMYDALIKDIFQKSPSGGVKLALKQ 103          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: A0A0G4F2X6_VITBC (PNPLA domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F2X6_VITBC)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-12
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPG--GGMKLALKQ 180
            GR+ HEVFD+I GTSTGGIIA L GV+   V E E +YD+LI  IF+K PG   G +L +KQ
Sbjct: 1449 GREVHEVFDIICGTSTGGIIAMLLGVQKSSVNEVEVLYDNLIKDIFVKDPGPISGARLVVKQ 1510          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: A0A7R9UET1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UET1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKL 168
            G++ HE+FD+I GTSTGGIIA L GV+   + + ER+YD L+ KIF + PG G KL
Sbjct:  165 GKELHELFDVICGTSTGGIIAVLLGVRRMSIDDIERLYDILLGKIFQRLPGAGAKL 220          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: A0A7S2R4X2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4X2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.850e-12
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHP-GGGMKLALKQ 180
            G+  HE+FD++ GTSTG IIA L G+K  P+ EC ++YD L+++IF+K+   G +KL ++Q
Sbjct:  251 GKDIHEIFDVVAGTSTGAIIACLIGLKHTPIDECAKLYDQLVSEIFVKNVISGPIKLGIRQ 311          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: F0VI15_NEOCL (PNPLA domain-containing protein n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VI15_NEOCL)

HSP 1 Score: 65.5 bits (158), Expect = 5.850e-11
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGG--GMKLALKQ 180
            GR+ HE FD+I GTSTGG+IA L G++   V E ER+YD LI +IF++      G +L L+Q
Sbjct: 1545 GREVHETFDIICGTSTGGVIAALLGLEKATVTETERLYDLLIREIFVRDSAAVTGARLVLRQ 1606          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: A0A2A9MKX0_9APIC (PNPLA domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MKX0_9APIC)

HSP 1 Score: 65.1 bits (157), Expect = 8.000e-11
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGG--GMKLALKQ 180
            G++ HE FD+I GTSTGG+IA L G++   V E ER+YD LI +IF++      G +L L+Q
Sbjct: 2028 GKEAHETFDIICGTSTGGVIAALLGLEKASVVEAERLYDLLIREIFVRDSAAVTGARLVLRQ 2089          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: S8GAX0_TOXGM (Phospholipase, patatin family protein n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S8GAX0_TOXGM)

HSP 1 Score: 64.7 bits (156), Expect = 1.090e-10
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGG--GMKLALKQ 180
            G++ HE FD+I GTSTGG+IA L G++   V+E ER+YD LI +IF++      G +L L+Q
Sbjct: 2057 GQEVHETFDIICGTSTGGVIAALLGLEKATVSEAERLYDLLIREIFVRDSAAVTGARLVLRQ 2118          
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Match: A0A4D9CW07_9STRA (PNPLA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW07_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.470e-10
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 GRQPHEVFDMIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHP 150
            G++ HE+FD+I GTSTGGI+A L  VKA  V E  R+YD LI KIF K P
Sbjct:  233 GKEVHELFDIICGTSTGGILAALFAVKATKVKEAGRLYDELIKKIFNKSP 282          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73807.18558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXR6_9PHAE1.320e-32100.00PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FNE8_ECTSI1.320e-32100.00Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835YX58_9STRA8.430e-2065.00Calcium-independent phospholipase-like protein A2-... [more]
A0A0G4F2X6_VITBC1.010e-1258.06PNPLA domain-containing protein n=1 Tax=Vitrella b... [more]
A0A7R9UET1_9STRA2.040e-1255.36Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S2R4X2_9STRA8.850e-1247.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0VI15_NEOCL5.850e-1150.00PNPLA domain-containing protein n=2 Tax=Neospora c... [more]
A0A2A9MKX0_9APIC8.000e-1148.39PNPLA domain-containing protein n=1 Tax=Besnoitia ... [more]
S8GAX0_TOXGM1.090e-1048.39Phospholipase, patatin family protein n=15 Tax=Tox... [more]
A0A4D9CW07_9STRA1.470e-1060.00PNPLA domain-containing protein n=1 Tax=Nannochlor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73807contigEcto-sp13_S_contig73807:138..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score106.3
Seed ortholog evalue4.3e-21
Seed eggNOG ortholog2880.D7FNE8
Model size180
KEGG koko:K16815
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.phosphatidylethanolamine catabolic process
EggNOG OGsKOG4231@1,KOG4231@2759
Cds size153
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.0175283-CDS-Ecto-sp13_S_contig73807:137..2901681464007.0175283-CDS-Ecto-sp13_S_contig73807:137..290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73807 138..290 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.0310555-UTR-Ecto-sp13_S_contig73807:290..3171681464007.0310555-UTR-Ecto-sp13_S_contig73807:290..317Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig73807 291..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73807.18558.1prot_Ecto-sp13_S_contig73807.18558.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73807 138..290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73807.18558.1

>prot_Ecto-sp13_S_contig73807.18558.1 ID=prot_Ecto-sp13_S_contig73807.18558.1|Name=mRNA_Ecto-sp13_S_contig73807.18558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MIVGTSTGGIIAGLAGVKAFPVAECERMYDSLINKIFIKHPGGGMKLALK
Q
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mRNA from alignment at Ecto-sp13_S_contig73807:138..317-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73807.18558.1 ID=mRNA_Ecto-sp13_S_contig73807.18558.1|Name=mRNA_Ecto-sp13_S_contig73807.18558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73807:138..317- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGGCAGCCCCACGAGGTTTTCGACATGATCGTGGGCACCAGCACTGG CGGGATCATCGCGGGGCTCGCCGGCGTCAAGGCCTTCCCAGTGGCGGAGT GCGAGAGGATGTACGACAGCCTCATCAACAAGATCTTCATCAAGCACCCT GGCGGGGGGATGAAGCTCGCCCTCAAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73807:138..317-

>mRNA_Ecto-sp13_S_contig73807.18558.1 ID=mRNA_Ecto-sp13_S_contig73807.18558.1|Name=mRNA_Ecto-sp13_S_contig73807.18558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73807:138..317- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTGGGCACCAGCACTGGCGGGATCATCGCGGGGCTCGCCGGCGT
CAAGGCCTTCCCAGTGGCGGAGTGCGAGAGGATGTACGACAGCCTCATCA
ACAAGATCTTCATCAAGCACCCTGGCGGGGGGATGAAGCTCGCCCTCAAG
CAG
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