prot_Ecto-sp13_S_contig12201.1855.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12201.1855.1
Unique Nameprot_Ecto-sp13_S_contig12201.1855.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length439
Homology
BLAST of mRNA_Ecto-sp13_S_contig12201.1855.1 vs. uniprot
Match: D7FUS4_ECTSI (EF hand family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS4_ECTSI)

HSP 1 Score: 692 bits (1786), Expect = 2.360e-244
Identity = 391/439 (89.07%), Postives = 403/439 (91.80%), Query Frame = 0
Query:    1 MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGASSKIGGWGSPEQSGSTRREGKEGHQQEKKKHHRGVSARCAGAGNAVRGVEEARNAAENLTSKAPLHAAACLRVMALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGGCLASLAPCDEECCMEMIDFGVLPTLLGFVRDRDPLFELTAWRVLAAIMRVREARETFVKARGTELLKGVLIRKQRRTGSNRFLLAIQESAMRVLLKLCEEEXXXXXXXXXXXXKSNGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHRPNDDSGNSTDKGNAQRRDLRRVGKGGRTSETDKIKRLPTSSSVSDRSGCNSDGEGGDQSSASPRLETMGDFVSKEEVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTIPLVLEMLASDTWMLKSAAAKV 439
            MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKG SSK  G GS EQSGSTRREGK+GHQQEK+KH RGVS R   AG+ V G EEA NAAENLTSKAPLHAAACLRV+ALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGGCLASLA CDEECCMEMIDFGVLPTLLGFVRDRDPL ELTAW VLAAIMRVREARE FVKA G ELL+GVL RKQRRTG NRFLL IQESAMRVLLKLCEEE   XXXXXXXXXK+NGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHR N+DSGNSTDKG+A+RRDLRRVGKGGRT E   IKRLPTS SVSDRSGCN DGEGGDQSSASPRLETMGDFVSKE VFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDST+PLVL+ML SDTWML SAAA+V
Sbjct:    1 MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGVSSKKWGRGSSEQSGSTRREGKQGHQQEKRKHTRGVSVRREEAGDEVCGEEEAWNAAENLTSKAPLHAAACLRVLALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGGCLASLARCDEECCMEMIDFGVLPTLLGFVRDRDPLPELTAWSVLAAIMRVREAREAFVKAGGAELLEGVLTRKQRRTGPNRFLLVIQESAMRVLLKLCEEEERDXXXXXXXXXKNNGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHRRNNDSGNSTDKGDAKRRDLRRVGKGGRTGEAGNIKRLPTSPSVSDRSGCNGDGEGGDQSSASPRLETMGDFVSKEGVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTMPLVLDMLKSDTWMLTSAAAQV 439          
BLAST of mRNA_Ecto-sp13_S_contig12201.1855.1 vs. uniprot
Match: A0A6H5J5F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5F4_9PHAE)

HSP 1 Score: 636 bits (1640), Expect = 5.210e-221
Identity = 369/505 (73.07%), Postives = 380/505 (75.25%), Query Frame = 0
Query:    1 MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGASSKIGGWGSPEQSGSTRREGKEGHQQEKKKHHRGVSARCAGAGNAVRGVEEARNAAENLTSKAPLHAAACLRVMALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGG------------------------------------------------------------------CLASLAPCDEECCMEMIDFGVLPTLLGFVRDRDPLFELTAWRVLAAIMRVREARETFVKARGTELLKGVLIRKQRRTGSNRFLLAIQESAMRVLLKLCEEEXXXXXXXXXXXXKSNGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHRPNDDSGNSTDKGNAQRRDLRRVGKGGRTSETDKIKRLPTSSSVSDRSGCNSDGEGGDQSSASPRLETMGDFVSKEEVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTIPLVLEMLASDTWMLKSAAAKV 439
            MRTRVAAALQKMLMFQDVRASV DATPSVVAPLVGLLQHPKGASSK  G G PEQSGS RREGK+GH QEKKKHHRGVS R AGAG+AV G EE+RN  E LTSKAPLHAAACLRV+ALSEGFPEIMASASAVPALVDG KSGSPLMKSVCGG                                                                  CLASLAPCDEECCMEMIDFGVLPTLLGFVR+RDPLFELTAWRVLAAIMRVREARE FVKA GTELL+GVL R                    V LKLCEEE            K+NGGRGDSKAISPTIPSMLLLDDN SNAS SSGHR NDDSGNSTDKGNA+RRDLR+ GKGGR  ETDKIKRLPTSSSV DRSGCNSDGEGGDQSSASPRLETMGDFVSKE VFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDST+PLVLEMLASDTWMLKSAAA+V
Sbjct:    1 MRTRVAAALQKMLMFQDVRASVMDATPSVVAPLVGLLQHPKGASSKPPGRGLPEQSGSIRREGKQGHPQEKKKHHRGVSVRRAGAGDAVCGEEESRNPTETLTSKAPLHAAACLRVLALSEGFPEIMASASAVPALVDGFKSGSPLMKSVCGGATCAFLGFFDCTHTACLTCKVNFLALHTFPSYFIGQISHAARFRLLRSCVGGRSQSFRASACIPVGCLASLAPCDEECCMEMIDFGVLPTLLGFVRNRDPLFELTAWRVLAAIMRVREAREAFVKAGGTELLEGVLTR--------------------VFLKLCEEEEIDQDERDKEQEKNNGGRGDSKAISPTIPSMLLLDDNRSNASGSSGHRRNDDSGNSTDKGNAERRDLRKFGKGGRAGETDKIKRLPTSSSVPDRSGCNSDGEGGDQSSASPRLETMGDFVSKEGVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTMPLVLEMLASDTWMLKSAAAQV 485          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12201.1855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUS4_ECTSI2.360e-24489.07EF hand family protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5J5F4_9PHAE5.210e-22173.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..267
e-value: 5.6E-15
score: 56.9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..439
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 32..265

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12201contigEcto-sp13_S_contig12201:1556..4960 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12201.1855.1mRNA_Ecto-sp13_S_contig12201.1855.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12201 1556..4960 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12201.1855.1 ID=prot_Ecto-sp13_S_contig12201.1855.1|Name=mRNA_Ecto-sp13_S_contig12201.1855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=439bp
MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGASSKIGGW
GSPEQSGSTRREGKEGHQQEKKKHHRGVSARCAGAGNAVRGVEEARNAAE
NLTSKAPLHAAACLRVMALSEGFPEIMASASAVPALVDGLKSGSPLMKSV
CGGCLASLAPCDEECCMEMIDFGVLPTLLGFVRDRDPLFELTAWRVLAAI
MRVREARETFVKARGTELLKGVLIRKQRRTGSNRFLLAIQESAMRVLLKL
CEEEEKDQDERDREQEKSNGGRGDSKAISPTIPSMLLLDDNGSNASDSSG
HRPNDDSGNSTDKGNAQRRDLRRVGKGGRTSETDKIKRLPTSSSVSDRSG
CNSDGEGGDQSSASPRLETMGDFVSKEEVFRGLLRQMKGGTQVSMKTSVE
VLKVTWRACSSRQVDSTIPLVLEMLASDTWMLKSAAAKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold