mRNA_Ecto-sp13_S_contig12201.1855.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12201.1855.1
Unique NamemRNA_Ecto-sp13_S_contig12201.1855.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12201.1855.1 vs. uniprot
Match: D7FUS4_ECTSI (EF hand family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS4_ECTSI)

HSP 1 Score: 692 bits (1786), Expect = 2.360e-244
Identity = 391/439 (89.07%), Postives = 403/439 (91.80%), Query Frame = 1 
Query:    1 MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGASSKIGGWGSPEQSGSTRREGKEGHQQEKKKHHRGVSARCAGAGNAVRGVEEARNAAENLTSKAPLHAAACLRVMALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGGCLASLAPCDEECCMEMIDFGVLPTLLGFVRDRDPLFELTAWRVLAAIMRVREARETFVKARGTELLKGVLIRKQRRTGSNRFLLAIQESAMRVLLKLCEEEXXXXXXXXXXXXKSNGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHRPNDDSGNSTDKGNAQRRDLRRVGKGGRTSETDKIKRLPTSSSVSDRSGCNSDGEGGDQSSASPRLETMGDFVSKEEVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTIPLVLEMLASDTWMLKSAAAKV 1317
            MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKG SSK  G GS EQSGSTRREGK+GHQQEK+KH RGVS R   AG+ V G EEA NAAENLTSKAPLHAAACLRV+ALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGGCLASLA CDEECCMEMIDFGVLPTLLGFVRDRDPL ELTAW VLAAIMRVREARE FVKA G ELL+GVL RKQRRTG NRFLL IQESAMRVLLKLCEEE   XXXXXXXXXK+NGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHR N+DSGNSTDKG+A+RRDLRRVGKGGRT E   IKRLPTS SVSDRSGCN DGEGGDQSSASPRLETMGDFVSKE VFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDST+PLVL+ML SDTWML SAAA+V
Sbjct:    1 MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGVSSKKWGRGSSEQSGSTRREGKQGHQQEKRKHTRGVSVRREEAGDEVCGEEEAWNAAENLTSKAPLHAAACLRVLALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGGCLASLARCDEECCMEMIDFGVLPTLLGFVRDRDPLPELTAWSVLAAIMRVREAREAFVKAGGAELLEGVLTRKQRRTGPNRFLLVIQESAMRVLLKLCEEEERDXXXXXXXXXKNNGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHRRNNDSGNSTDKGDAKRRDLRRVGKGGRTGEAGNIKRLPTSPSVSDRSGCNGDGEGGDQSSASPRLETMGDFVSKEGVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTMPLVLDMLKSDTWMLTSAAAQV 439
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BLAST of mRNA_Ecto-sp13_S_contig12201.1855.1 vs. uniprot
Match: A0A6H5J5F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5F4_9PHAE)

HSP 1 Score: 636 bits (1640), Expect = 5.210e-221
Identity = 369/505 (73.07%), Postives = 380/505 (75.25%), Query Frame = 1 
Query:    1 MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGASSKIGGWGSPEQSGSTRREGKEGHQQEKKKHHRGVSARCAGAGNAVRGVEEARNAAENLTSKAPLHAAACLRVMALSEGFPEIMASASAVPALVDGLKSGSPLMKSVCGG------------------------------------------------------------------CLASLAPCDEECCMEMIDFGVLPTLLGFVRDRDPLFELTAWRVLAAIMRVREARETFVKARGTELLKGVLIRKQRRTGSNRFLLAIQESAMRVLLKLCEEEXXXXXXXXXXXXKSNGGRGDSKAISPTIPSMLLLDDNGSNASDSSGHRPNDDSGNSTDKGNAQRRDLRRVGKGGRTSETDKIKRLPTSSSVSDRSGCNSDGEGGDQSSASPRLETMGDFVSKEEVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTIPLVLEMLASDTWMLKSAAAKV 1317
            MRTRVAAALQKMLMFQDVRASV DATPSVVAPLVGLLQHPKGASSK  G G PEQSGS RREGK+GH QEKKKHHRGVS R AGAG+AV G EE+RN  E LTSKAPLHAAACLRV+ALSEGFPEIMASASAVPALVDG KSGSPLMKSVCGG                                                                  CLASLAPCDEECCMEMIDFGVLPTLLGFVR+RDPLFELTAWRVLAAIMRVREARE FVKA GTELL+GVL R                    V LKLCEEE            K+NGGRGDSKAISPTIPSMLLLDDN SNAS SSGHR NDDSGNSTDKGNA+RRDLR+ GKGGR  ETDKIKRLPTSSSV DRSGCNSDGEGGDQSSASPRLETMGDFVSKE VFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDST+PLVLEMLASDTWMLKSAAA+V
Sbjct:    1 MRTRVAAALQKMLMFQDVRASVMDATPSVVAPLVGLLQHPKGASSKPPGRGLPEQSGSIRREGKQGHPQEKKKHHRGVSVRRAGAGDAVCGEEESRNPTETLTSKAPLHAAACLRVLALSEGFPEIMASASAVPALVDGFKSGSPLMKSVCGGATCAFLGFFDCTHTACLTCKVNFLALHTFPSYFIGQISHAARFRLLRSCVGGRSQSFRASACIPVGCLASLAPCDEECCMEMIDFGVLPTLLGFVRNRDPLFELTAWRVLAAIMRVREAREAFVKAGGTELLEGVLTR--------------------VFLKLCEEEEIDQDERDKEQEKNNGGRGDSKAISPTIPSMLLLDDNRSNASGSSGHRRNDDSGNSTDKGNAERRDLRKFGKGGRAGETDKIKRLPTSSSVPDRSGCNSDGEGGDQSSASPRLETMGDFVSKEGVFRGLLRQMKGGTQVSMKTSVEVLKVTWRACSSRQVDSTMPLVLEMLASDTWMLKSAAAQV 485
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12201.1855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUS4_ECTSI2.360e-24489.07EF hand family protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5J5F4_9PHAE5.210e-22173.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12201contigEcto-sp13_S_contig12201:1556..4960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1317
Hectar predicted targeting categoryother localisation
Exons7
Cds size1317
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12201.1855.1prot_Ecto-sp13_S_contig12201.1855.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12201 1556..4960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462648.705339-CDS-Ecto-sp13_S_contig12201:1555..18701681462648.705339-CDS-Ecto-sp13_S_contig12201:1555..1870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12201 1556..1870 +
1681462648.7170148-CDS-Ecto-sp13_S_contig12201:2174..23161681462648.7170148-CDS-Ecto-sp13_S_contig12201:2174..2316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12201 2175..2316 +
1681462648.7251117-CDS-Ecto-sp13_S_contig12201:2508..26211681462648.7251117-CDS-Ecto-sp13_S_contig12201:2508..2621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12201 2509..2621 +
1681462648.7333243-CDS-Ecto-sp13_S_contig12201:3048..31531681462648.7333243-CDS-Ecto-sp13_S_contig12201:3048..3153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12201 3049..3153 +
1681462648.7415524-CDS-Ecto-sp13_S_contig12201:3539..35991681462648.7415524-CDS-Ecto-sp13_S_contig12201:3539..3599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12201 3540..3599 +
1681462648.7507067-CDS-Ecto-sp13_S_contig12201:3942..44071681462648.7507067-CDS-Ecto-sp13_S_contig12201:3942..4407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12201 3943..4407 +
1681462648.7607849-CDS-Ecto-sp13_S_contig12201:4843..49601681462648.7607849-CDS-Ecto-sp13_S_contig12201:4843..4960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12201 4844..4960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12201.1855.1

>prot_Ecto-sp13_S_contig12201.1855.1 ID=prot_Ecto-sp13_S_contig12201.1855.1|Name=mRNA_Ecto-sp13_S_contig12201.1855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=439bp
MRTRVAAALQKMLMFQDVRASVADATPSVVAPLVGLLQHPKGASSKIGGW
GSPEQSGSTRREGKEGHQQEKKKHHRGVSARCAGAGNAVRGVEEARNAAE
NLTSKAPLHAAACLRVMALSEGFPEIMASASAVPALVDGLKSGSPLMKSV
CGGCLASLAPCDEECCMEMIDFGVLPTLLGFVRDRDPLFELTAWRVLAAI
MRVREARETFVKARGTELLKGVLIRKQRRTGSNRFLLAIQESAMRVLLKL
CEEEEKDQDERDREQEKSNGGRGDSKAISPTIPSMLLLDDNGSNASDSSG
HRPNDDSGNSTDKGNAQRRDLRRVGKGGRTSETDKIKRLPTSSSVSDRSG
CNSDGEGGDQSSASPRLETMGDFVSKEEVFRGLLRQMKGGTQVSMKTSVE
VLKVTWRACSSRQVDSTIPLVLEMLASDTWMLKSAAAKV
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mRNA from alignment at Ecto-sp13_S_contig12201:1556..4960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12201.1855.1 ID=mRNA_Ecto-sp13_S_contig12201.1855.1|Name=mRNA_Ecto-sp13_S_contig12201.1855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12201:1556..4960+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGACAAGGGTGGCCGCCGCTCTGCAGAAGATGCTGATGTTCCAAGA
CGTGAGGGCAAGCGTGGCGGACGCCACCCCTTCGGTCGTGGCGCCCCTGG
TGGGTCTCCTCCAGCATCCAAAGGGAGCGTCGTCGAAGATAGGGGGGTGG
GGGTCACCCGAGCAAAGCGGATCGACCAGACGGGAGGGTAAAGAAGGGCA
TCAGCAGGAAAAGAAGAAGCACCACCGGGGAGTTTCAGCTCGATGCGCGG
GGGCGGGGAACGCAGTTCGTGGAGTGGAAGAGGCTCGGAATGCGGCCGAA
AATCTGACCAGCAAGGTGAGTCATGGAAGCTCGTCCTGTCGCTGGTACCG
ATTAGGCTTTCACTCTTCGGTACCCGTCCGCCGACGTGCCATCTTTTCCC
ATCCGGAGCCAAACTTGACCCCTGCCATGCCCGTTTTTCCGCGGATGTTC
AGTCCTCTACGACCCTAAAACCAAGAACATCGCCGGCTCTCACGACCGTC
CTAAATTTTGCGAACAATCCTAGCCCCCATTAGACCCCCGGCACGAAAGC
AAGCATTCTCTTTGCACCACCGCCCCCCTCCATCACTTATTCCCACCTCT
TCGTACCTCGTGAACACAGGCTCCCCTACACGCGGCCGCATGCCTCCGTG
TGATGGCCCTGAGCGAGGGCTTTCCAGAGATCATGGCCTCGGCTTCGGCC
GTCCCGGCGCTGGTAGACGGGCTCAAGAGCGGTTCACCCCTCATGAAGAG
CGTCTGTGGAGGTACTACCTGCGCATTTCTCTGCTTCTTCGACTGCACAC
ATATCAGCATGCCTGAGTCAATTTTTTGGCCCTCCATCCCTTCCCTTCCT
ATTTCTAAGGCCAAAAATTCACACGCTGCCCGGTCCAGACTCTTCGGGCC
CTGCGTCGGTGACCGATCGCAATCGTTCCGTTACTCGGCCTGTATCCCCG
CAGGTTGTCTAGCTAGCCTGGCGCCCTGCGACGAAGAGTGTTGCATGGAG
ATGATAGACTTCGGGGTGTTGCCGACCCTGCTCGGCTTCGTTCGGGACAG
AGACCCACTTTTCGAGGTAGGGCCATGCCACCAAATCAACAAGCCCAAGC
ACGGTCCGAAATCAACAGCTCAAACCCACAACCCGTACGAAGCACGCGGC
GATCGAAAAATCCCACATTGTCAAGGCTCCTGTAAAGATGATGATGCTAG
ATAAAAGTAAGCGCGGTCGAAATATATCAAATGACTTTACTGTCACAGCA
ACTTCTGACACAACATCACAAATATTGTAGTGGCCGTGGTTGTTGTTGTG
GTTGCTGCTATGAGTAGTTGTTGAATAAAATGTATATTATCACACGCTGG
GCATGCCCCTCGTGTCCTTTCCTGTAAACGTTTCCTTGTCCATCCCCGGA
AATCCGCGGGTCGTCCTGGACACCGCTTTGACCCCCAGCAAATAATGATC
ATGCGCCATTGTTTTCTCGCGATGCACTGCTCCTCGTCCAAAGCTCACCG
CGTGGAGAGTGCTGGCGGCCATCATGCGGGTTCGAGAGGCACGCGAAACG
TTCGTCAAGGCAAGGGGGACGGAGCTCCTCAAAGGCGTGCTGATAAGGGT
ACGTGTGAGAGGCAAGGGCATGTGTGTTCGATGCCATTCGCTGGGGGGGT
CAGGTGTGATACTGAAGTAAGAGGCGAGTGCGAACCGCAGTAAGGGGAGG
ACTGCTGGTGCTTGACGCTAGTTCTCTTGTAGGGCACGATCGGCTTAGAA
GTGTAGCGCGATCAGGCAATGTGAATGCCTCATGGTCCAGCAGGTTTTAA
ACACTAGGTGTTCCATGGTGAGCAAGTCTAGATGATGGTCATTCGGCGTT
TTCATGCGTTCTTGCTGCGAAGAAAAAGAGAGAAGGATCAGCGGTATTCA
GCACCCACCCTCTCTTCATTTTCACCGCTCATGTTCACCCCCCCGTGCTC
CTTGCCGCACTACGCCATGAACAAACGTTGACAGAAGCAACGCAGGACGG
GCTCAAACCGTTTCCTTCTCGCCATCCAGGAAAGCGCGATGCGGGTGAGC
AAAAAAGGATGACTCAAACCATTTTTGCCTTGGACGGCTGTGTCTTTGGC
CAGCCGGTAATGAATTCAGACGTGCTTAGTAGTTCTGCGAAGGAGGCGGA
CGTAGTCCGTGTGCCTCTGCCTCGTGTTGACCGTTCGTCATTCCCACCAG
CCAGCAATAAGAAGCAACCGGACGCACAAAATCCAGCAAAGAATGAAAAT
CCCATCATGGCCCCACGGAAACACATTAACAAGATCTTCACGAAAGGTTC
AAAACGTTAAACGAGGATACGAAAAACGGTGTGATTCTGTCAAGAGGTGT
CGTGTTTCTTATCACGAGCCCACACACGTGCACGCAGGTTCTCTTGAAGC
TATGCGAAGAAGAGGAAAAAGATCAAGACGAACGCGACAGAGAGCAGGAA
AAAAGTAACGGCGGCAGAGGTGACTCCAAAGCCATCAGCCCGACAATCCC
GTCCATGCTCCTGCTCGACGACAATGGAAGCAATGCCAGCGACAGCAGTG
GACATCGCCCCAACGACGACAGCGGCAATAGTACCGACAAAGGCAACGCC
CAAAGAAGAGACTTGAGGAGGGTTGGGAAGGGGGGAAGGACAAGCGAGAC
AGACAAGATCAAGCGGTTGCCAACATCATCGTCCGTCTCTGATAGAAGCG
GTTGCAACAGCGACGGCGAGGGCGGGGATCAATCGTCCGCATCCCCTCGT
CTCGAAACCATGGGCGACTTCGTGTCGAAAGAGGAGGTGTTTCGCGGCCT
TTTGAGGCAGATGAAGGGGGGCACACAGGTCTCCATGAAGACATCGGTAG
AGGTGAGAAGGGTATCTCTCCCGGGTGGCACGCCGCCCTCCTGCTGAACC
TCTTCAGGACCCGAACTTTAGGTCTGGTGGCGAGGTGGTACCTATCCCTT
TCTCACCAGCAGTGATGAACGCACCCGGTTCACCCACAAGTTGATGTTTT
TGTCGTTGTTGCTGTTGTTGTTGTTGATACCTCAATACCAAAAAACGGAG
TGATATGCTTACTGTAGTTTCGGCTGTAGAGCGTGAAGCGAGAAGTTCGT
TGTTGAGAATCTTACCATGCCTGTTCCTAGATCCCAGCTGGGGAAGAAGG
GTCCTGAGCAGCGGTGACAACACCACCAGAATGGATACGTACGTCACAAC
AAAGTTAATCATCCGACGGTAGCATATCGTCCGCTGGCTGATCATTCGAG
GCCTTGGCCAAGAAATGCCCCGGTGTGCTTCATCTCAGGTGCTGAAGGTG
ACGTGGAGAGCTTGTTCCAGCAGACAGGTGGACTCGACAATACCCCTGGT
GCTCGAAATGCTGGCGTCCGATACATGGATGCTCAAGTCCGCGGCCGCCA
AGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12201:1556..4960+

>mRNA_Ecto-sp13_S_contig12201.1855.1 ID=mRNA_Ecto-sp13_S_contig12201.1855.1|Name=mRNA_Ecto-sp13_S_contig12201.1855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12201:1556..4960+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGACAAGGGTGGCCGCCGCTCTGCAGAAGATGCTGATGTTCCAAGA
CGTGAGGGCAAGCGTGGCGGACGCCACCCCTTCGGTCGTGGCGCCCCTGG
TGGGTCTCCTCCAGCATCCAAAGGGAGCGTCGTCGAAGATAGGGGGGTGG
GGGTCACCCGAGCAAAGCGGATCGACCAGACGGGAGGGTAAAGAAGGGCA
TCAGCAGGAAAAGAAGAAGCACCACCGGGGAGTTTCAGCTCGATGCGCGG
GGGCGGGGAACGCAGTTCGTGGAGTGGAAGAGGCTCGGAATGCGGCCGAA
AATCTGACCAGCAAGGCTCCCCTACACGCGGCCGCATGCCTCCGTGTGAT
GGCCCTGAGCGAGGGCTTTCCAGAGATCATGGCCTCGGCTTCGGCCGTCC
CGGCGCTGGTAGACGGGCTCAAGAGCGGTTCACCCCTCATGAAGAGCGTC
TGTGGAGGTTGTCTAGCTAGCCTGGCGCCCTGCGACGAAGAGTGTTGCAT
GGAGATGATAGACTTCGGGGTGTTGCCGACCCTGCTCGGCTTCGTTCGGG
ACAGAGACCCACTTTTCGAGCTCACCGCGTGGAGAGTGCTGGCGGCCATC
ATGCGGGTTCGAGAGGCACGCGAAACGTTCGTCAAGGCAAGGGGGACGGA
GCTCCTCAAAGGCGTGCTGATAAGGAAGCAACGCAGGACGGGCTCAAACC
GTTTCCTTCTCGCCATCCAGGAAAGCGCGATGCGGGTTCTCTTGAAGCTA
TGCGAAGAAGAGGAAAAAGATCAAGACGAACGCGACAGAGAGCAGGAAAA
AAGTAACGGCGGCAGAGGTGACTCCAAAGCCATCAGCCCGACAATCCCGT
CCATGCTCCTGCTCGACGACAATGGAAGCAATGCCAGCGACAGCAGTGGA
CATCGCCCCAACGACGACAGCGGCAATAGTACCGACAAAGGCAACGCCCA
AAGAAGAGACTTGAGGAGGGTTGGGAAGGGGGGAAGGACAAGCGAGACAG
ACAAGATCAAGCGGTTGCCAACATCATCGTCCGTCTCTGATAGAAGCGGT
TGCAACAGCGACGGCGAGGGCGGGGATCAATCGTCCGCATCCCCTCGTCT
CGAAACCATGGGCGACTTCGTGTCGAAAGAGGAGGTGTTTCGCGGCCTTT
TGAGGCAGATGAAGGGGGGCACACAGGTCTCCATGAAGACATCGGTAGAG
GTGCTGAAGGTGACGTGGAGAGCTTGTTCCAGCAGACAGGTGGACTCGAC
AATACCCCTGGTGCTCGAAATGCTGGCGTCCGATACATGGATGCTCAAGT
CCGCGGCCGCCAAGGTC
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