mRNA_Ecto-sp13_S_contig73763.18548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73763.18548.1
Unique NamemRNA_Ecto-sp13_S_contig73763.18548.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.470e-24
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
            IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLL+TS+EKQGDLSLYTL
Sbjct:  169 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTL 221          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.030e-23
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
            IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLL+TS+EKQGDLSLYTL
Sbjct: 2034 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTL 2086          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A836CB55_9STRA (PsbP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB55_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.040e-11
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
            +DPVRI SL+ FG+ +EVG +V+ VE  KDG L+ KLL TSSE+ GD+  YT+
Sbjct:   51 VDPVRINSLDQFGSAQEVGTKVVNVELGKDGCLEAKLLGTSSERMGDVLAYTI 103          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0J2K1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2K1_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.350e-8
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
            +DPV+I+SLE FGTPEEV +RVL VE+ +DG LD +L + ++   G  S YT+
Sbjct:   25 VDPVKIDSLEAFGTPEEVASRVLAVEEGRDGVLDVQLRSLAAHT-GTPSYYTI 76          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0LET4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LET4_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 6.000e-8
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
            +DPV+I+SLE FGTPEEV  RVL VE+ +DG LD +L + +++  G  S YT+
Sbjct:  106 VDPVKIDSLEAFGTPEEVADRVLAVEEGRDGVLDVQLRSLAADA-GKPSYYTI 157          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A0G4EN49_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN49_VITBC)

HSP 1 Score: 52.8 bits (125), Expect = 2.880e-7
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLY 153
            +DPV+I+SL  FGTP+ VG R++ VE+ KDG +D +LL   S + G    Y
Sbjct:   23 VDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFY 73          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A5J4Z337_PORPP (PsbP domain-containing protein 2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z337_PORPP)

HSP 1 Score: 53.5 bits (127), Expect = 6.460e-7
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLY 153
            +DPV+I S++ FGTPE +G +V+++E+ KDG     LL++S +  GDL  Y
Sbjct:  187 VDPVKINSVKEFGTPEALGEKVIELERRKDGVSSATLLSSSQKNAGDLDYY 237          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0QHT9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHT9_9CRYP)

HSP 1 Score: 50.8 bits (120), Expect = 2.920e-6
Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
            +DPV+I+++  FGTP +VG RV+ +E++KDG L  KL+    E +  +  YT+
Sbjct:   69 VDPVKIDTVTAFGTPLQVGKRVVALERSKDGVLSAKLIAVGQEDRDGVPYYTI 121          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0CF90_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CF90_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.100e-6
Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:    1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSL 150
            IDPVRI S+  FGTPEEV ARV+ VE  +DG  D  L +T+    G   L
Sbjct:   43 IDPVRINSISQFGTPEEVAARVVGVEVNRDGVFDVTLNSTADVGHGQYQL 92          
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A1X6PDH3_PORUM (PsbP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDH3_PORUM)

HSP 1 Score: 49.7 bits (117), Expect = 1.580e-5
Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    7 PVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQG 138
            P++I S+E FGTP+ VGA+VL +E+ KD T D +L+ T+SE  G
Sbjct:  275 PLKIGSIEEFGTPDAVGAKVLALERKKDSTKDVRLVRTASETLG 318          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FNF2_ECTSI1.470e-2496.23Similar to photosystem II oxygen evolving complex ... [more]
A0A6H5JQE7_9PHAE2.030e-2396.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CB55_9STRA1.040e-1156.60PsbP domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0J2K1_9EUKA1.350e-852.83Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0LET4_9EUKA6.000e-852.83Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A0G4EN49_VITBC2.880e-747.06PsbP domain-containing protein n=1 Tax=Vitrella br... [more]
A0A5J4Z337_PORPP6.460e-745.10PsbP domain-containing protein 2, chloroplastic n=... [more]
A0A7S0QHT9_9CRYP2.920e-641.51Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S0CF90_9STRA4.100e-652.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1X6PDH3_PORUM1.580e-552.27PsbP domain-containing protein n=1 Tax=Porphyra um... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73763contigEcto-sp13_S_contig73763:373..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score102.1
Seed ortholog evalue8.4e-20
Seed eggNOG ortholog2880.D7FNF2
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.PsbP
EggNOG OGs2E2MJ@1,2S9US@2759
Cds size159
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464006.0553713-CDS-Ecto-sp13_S_contig73763:372..5311681464006.0553713-CDS-Ecto-sp13_S_contig73763:372..531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73763 373..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73763.18548.1prot_Ecto-sp13_S_contig73763.18548.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73763 373..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73763.18548.1

>prot_Ecto-sp13_S_contig73763.18548.1 ID=prot_Ecto-sp13_S_contig73763.18548.1|Name=mRNA_Ecto-sp13_S_contig73763.18548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSL
YTL
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mRNA from alignment at Ecto-sp13_S_contig73763:373..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73763.18548.1 ID=mRNA_Ecto-sp13_S_contig73763.18548.1|Name=mRNA_Ecto-sp13_S_contig73763.18548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73763:373..531- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGACCCGGTTAGGATAGAGTCCCTGGAGACGTTTGGGACTCCTGAGGA AGTAGGCGCGAGGGTGCTCAAGGTGGAGCAGGCAAAAGACGGAACGCTTG ACACCAAGCTATTGAACACTAGCTCTGAAAAGCAGGGGGACTTGTCGCTC TACACCTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73763:373..531-

>mRNA_Ecto-sp13_S_contig73763.18548.1 ID=mRNA_Ecto-sp13_S_contig73763.18548.1|Name=mRNA_Ecto-sp13_S_contig73763.18548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73763:373..531- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGACCCGGTTAGGATAGAGTCCCTGGAGACGTTTGGGACTCCTGAGGA
AGTAGGCGCGAGGGTGCTCAAGGTGGAGCAGGCAAAAGACGGAACGCTTG
ACACCAAGCTATTGAACACTAGCTCTGAAAAGCAGGGGGACTTGTCGCTC
TACACCTTG
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