mRNA_Ecto-sp13_S_contig73763.18548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: D7FNF2_ECTSI (Similar to photosystem II oxygen evolving complex protein PsbP in Synechococcus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNF2_ECTSI) HSP 1 Score: 100 bits (249), Expect = 1.470e-24 Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLL+TS+EKQGDLSLYTL
Sbjct: 169 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTL 221
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A6H5JQE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE7_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.030e-23 Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLL+TS+EKQGDLSLYTL
Sbjct: 2034 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLDTSAEKQGDLSLYTL 2086
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A836CB55_9STRA (PsbP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB55_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.040e-11 Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
+DPVRI SL+ FG+ +EVG +V+ VE KDG L+ KLL TSSE+ GD+ YT+
Sbjct: 51 VDPVRINSLDQFGSAQEVGTKVVNVELGKDGCLEAKLLGTSSERMGDVLAYTI 103
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0J2K1_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J2K1_9EUKA) HSP 1 Score: 56.2 bits (134), Expect = 1.350e-8 Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
+DPV+I+SLE FGTPEEV +RVL VE+ +DG LD +L + ++ G S YT+
Sbjct: 25 VDPVKIDSLEAFGTPEEVASRVLAVEEGRDGVLDVQLRSLAAHT-GTPSYYTI 76
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0LET4_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LET4_9EUKA) HSP 1 Score: 55.8 bits (133), Expect = 6.000e-8 Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
+DPV+I+SLE FGTPEEV RVL VE+ +DG LD +L + +++ G S YT+
Sbjct: 106 VDPVKIDSLEAFGTPEEVADRVLAVEEGRDGVLDVQLRSLAADA-GKPSYYTI 157
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A0G4EN49_VITBC (PsbP domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EN49_VITBC) HSP 1 Score: 52.8 bits (125), Expect = 2.880e-7 Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLY 153
+DPV+I+SL FGTP+ VG R++ VE+ KDG +D +LL S + G Y
Sbjct: 23 VDPVKIDSLAAFGTPDFVGQRIVDVEKKKDGVIDVQLLKAESLESGGQVFY 73
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A5J4Z337_PORPP (PsbP domain-containing protein 2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z337_PORPP) HSP 1 Score: 53.5 bits (127), Expect = 6.460e-7 Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLY 153
+DPV+I S++ FGTPE +G +V+++E+ KDG LL++S + GDL Y
Sbjct: 187 VDPVKINSVKEFGTPEALGEKVIELERRKDGVSSATLLSSSQKNAGDLDYY 237
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0QHT9_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHT9_9CRYP) HSP 1 Score: 50.8 bits (120), Expect = 2.920e-6 Identity = 22/53 (41.51%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLYTL 159
+DPV+I+++ FGTP +VG RV+ +E++KDG L KL+ E + + YT+
Sbjct: 69 VDPVKIDTVTAFGTPLQVGKRVVALERSKDGVLSAKLIAVGQEDRDGVPYYTI 121
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A7S0CF90_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CF90_9STRA) HSP 1 Score: 50.1 bits (118), Expect = 4.100e-6 Identity = 26/50 (52.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query: 1 IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSL 150
IDPVRI S+ FGTPEEV ARV+ VE +DG D L +T+ G L
Sbjct: 43 IDPVRINSISQFGTPEEVAARVVGVEVNRDGVFDVTLNSTADVGHGQYQL 92
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Match: A0A1X6PDH3_PORUM (PsbP domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PDH3_PORUM) HSP 1 Score: 49.7 bits (117), Expect = 1.580e-5 Identity = 23/44 (52.27%), Postives = 33/44 (75.00%), Query Frame = 1
Query: 7 PVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQG 138
P++I S+E FGTP+ VGA+VL +E+ KD T D +L+ T+SE G
Sbjct: 275 PLKIGSIEEFGTPDAVGAKVLALERKKDSTKDVRLVRTASETLG 318 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73763.18548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig73763.18548.1 >prot_Ecto-sp13_S_contig73763.18548.1 ID=prot_Ecto-sp13_S_contig73763.18548.1|Name=mRNA_Ecto-sp13_S_contig73763.18548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp IDPVRIESLETFGTPEEVGARVLKVEQAKDGTLDTKLLNTSSEKQGDLSLback to top mRNA from alignment at Ecto-sp13_S_contig73763:373..531- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig73763.18548.1 ID=mRNA_Ecto-sp13_S_contig73763.18548.1|Name=mRNA_Ecto-sp13_S_contig73763.18548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73763:373..531- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73763:373..531- >mRNA_Ecto-sp13_S_contig73763.18548.1 ID=mRNA_Ecto-sp13_S_contig73763.18548.1|Name=mRNA_Ecto-sp13_S_contig73763.18548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73763:373..531- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |