mRNA_Ecto-sp13_S_contig7349.18516.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7349.18516.1
Unique NamemRNA_Ecto-sp13_S_contig7349.18516.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7349.18516.1 vs. uniprot
Match: A0A6H5KXK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 9.270e-29
Identity = 97/169 (57.40%), Postives = 101/169 (59.76%), Query Frame = 3 
Query:  123 MQSSLSVLYVFVLLWEGVVAFTSAPKARPQSRVTSFSNQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 626
            M+SSL VLYVF+LLW+GVVAFT+APKA PQSRV SF NQR                                                               XXXXXXXXXXXXXXXXX ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL
Sbjct:    1 MRSSLLVLYVFMLLWDGVVAFTAAPKALPQSRVPSFRNQRRRYYAGTANTRRRPTRITCAAGSDSSSELVLDPSRRSDDDSTSIDIEGISNDDDARLSQRVSLXXXXXXXXXXXXXXXXXXETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 169
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BLAST of mRNA_Ecto-sp13_S_contig7349.18516.1 vs. uniprot
Match: D7FSF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 3.820e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:  483 ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 626
            ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL
Sbjct:  107 ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7349.18516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXK8_9PHAE9.270e-2957.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSF2_ECTSI3.820e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7349contigEcto-sp13_S_contig7349:6159..7394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score96.3
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog2880.D7FSF2
Model size706
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons2
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Cds size582
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464003.2367718-UTR-Ecto-sp13_S_contig7349:6158..62801681464003.2367718-UTR-Ecto-sp13_S_contig7349:6158..6280Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7349 6159..6280 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464003.2733572-CDS-Ecto-sp13_S_contig7349:6280..67841681464003.2733572-CDS-Ecto-sp13_S_contig7349:6280..6784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7349 6281..6784 +
1681464003.2827094-CDS-Ecto-sp13_S_contig7349:7316..73941681464003.2827094-CDS-Ecto-sp13_S_contig7349:7316..7394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7349 7317..7394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7349.18516.1prot_Ecto-sp13_S_contig7349.18516.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7349 6281..7394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7349.18516.1

>prot_Ecto-sp13_S_contig7349.18516.1 ID=prot_Ecto-sp13_S_contig7349.18516.1|Name=mRNA_Ecto-sp13_S_contig7349.18516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MQSSLSVLYVFVLLWEGVVAFTSAPKARPQSRVTSFSNQRRRYYAGMAST
RRRTTRTACAASEPSSELVQDPCRRSDDGSASSDTKGISNDDDARLSQRD
LLLLATGDSEEQQEEEQEQEETGWVGETLSKGAEAVVSGVKSAARASKPL
RREADGRIVPDGDGLLNLIHRMTRGPRPQHIYFYTRDPEELDER
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mRNA from alignment at Ecto-sp13_S_contig7349:6159..7394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7349.18516.1 ID=mRNA_Ecto-sp13_S_contig7349.18516.1|Name=mRNA_Ecto-sp13_S_contig7349.18516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1236bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7349:6159..7394+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCATACACCATACCCGGAGCTGTAGCAGTACACAATGTACAACACGTC
CTTGAAGGCCCTCCGACGACGTGCCACTTTAACCTTCTCTCCACGACGTG
GGGATTTCATTGACTTCTGGTCATGCAGAGTTCACTGTCAGTGTTATACG
TGTTCGTGTTGTTGTGGGAGGGAGTCGTCGCGTTCACATCTGCTCCAAAA
GCACGACCGCAATCTCGAGTGACGTCCTTCAGCAATCAACGCCGCCGCTA
CTACGCAGGAATGGCAAGCACCCGCCGCCGCACCACCAGGACTGCGTGCG
CCGCTTCTGAACCTTCATCGGAGCTGGTGCAAGATCCATGCCGGCGCAGT
GATGATGGTAGTGCTTCAAGCGACACCAAGGGCATCTCCAACGATGATGA
TGCGCGATTATCGCAGCGGGACTTGTTGCTGCTCGCGACAGGGGATTCCG
AGGAGCAGCAGGAGGAGGAACAGGAGCAAGAGGAGACCGGGTGGGTTGGG
GAAACGCTCAGTAAGGGTGCGGAGGCAGTGGTCAGCGGGGTAAAGAGTGC
AGCCCGGGCTTCGAAGCCATTGAGACGAGAGGCTGATGGTCGCATCGTGC
CTGATGGAGACGGATTGTTGAACTTGGTGAGTTGAATGTTGATGTTCGGT
GTGTGTTGGTTTTGCTGGTTTTCATCTGGTGGGACATAATTTAGCATGTG
CATCATGGGTTGTGCATAGGAAGATACGAGCGTGCTACTGGTACCCATTG
GAGGAAAGCGGTCATCGGAGGACAGCAATCCTCGGGGGGGTCGTGTGCGG
ATAGTTCGCCCTCCTATTCGCACGGCCTCCCGTCGTACATGGCGTGTATC
CTTACCACAAGTTCGATAGCGCCTGCCGGGGATGTCAAATTACACCGCTC
ACATTGGCATATTCTTGAATCCACGGCTCAACTCAACAGCACGTCAGCAG
GCAGGGAATAACATAACCTTGGGTATACAGCAATGGCCCGCAAGGCCGCA
TGCAGGCTCAAAATATTTTGCTTGAAAGCCATCAATCGACGACAGCAGTC
GAACCTCTTTCGAAAGATAGCGGGACCATTTTTTTTTGCCCGCTGCCAAC
CTCTACCTCACTACTTTGCATGTGTCCTGTGGATTTGCGCTACTGCTGTT
CGTTCGAGATTCACCGGATGACGAGAGGTCCCAGGCCTCAGCACATTTAC
TTCTATACCAGAGACCCCGAGGAGCTAGATGAACGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7349:6159..7394+

>mRNA_Ecto-sp13_S_contig7349.18516.1 ID=mRNA_Ecto-sp13_S_contig7349.18516.1|Name=mRNA_Ecto-sp13_S_contig7349.18516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7349:6159..7394+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGTTCACTGTCAGTGTTATACGTGTTCGTGTTGTTGTGGGAGGG
AGTCGTCGCGTTCACATCTGCTCCAAAAGCACGACCGCAATCTCGAGTGA
CGTCCTTCAGCAATCAACGCCGCCGCTACTACGCAGGAATGGCAAGCACC
CGCCGCCGCACCACCAGGACTGCGTGCGCCGCTTCTGAACCTTCATCGGA
GCTGGTGCAAGATCCATGCCGGCGCAGTGATGATGGTAGTGCTTCAAGCG
ACACCAAGGGCATCTCCAACGATGATGATGCGCGATTATCGCAGCGGGAC
TTGTTGCTGCTCGCGACAGGGGATTCCGAGGAGCAGCAGGAGGAGGAACA
GGAGCAAGAGGAGACCGGGTGGGTTGGGGAAACGCTCAGTAAGGGTGCGG
AGGCAGTGGTCAGCGGGGTAAAGAGTGCAGCCCGGGCTTCGAAGCCATTG
AGACGAGAGGCTGATGGTCGCATCGTGCCTGATGGAGACGGATTGTTGAA
CTTGATTCACCGGATGACGAGAGGTCCCAGGCCTCAGCACATTTACTTCT
ATACCAGAGACCCCGAGGAGCTAGATGAACGC
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