prot_Ecto-sp13_S_contig7349.18516.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7349.18516.1
Unique Nameprot_Ecto-sp13_S_contig7349.18516.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length194
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7349.18516.1 vs. uniprot
Match: A0A6H5KXK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.010e-28
Identity = 97/169 (57.40%), Postives = 101/169 (59.76%), Query Frame = 0 
Query:    1 MQSSLSVLYVFVLLWEGVVAFTSAPKARPQSRVTSFSNQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 168
            M+SSL VLYVF+LLW+GVVAFT+APKA PQSRV SF NQR                                                               XXXXXXXXXXXXXXXXX ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL
Sbjct:    1 MRSSLLVLYVFMLLWDGVVAFTAAPKALPQSRVPSFRNQRRRYYAGTANTRRRPTRITCAAGSDSSSELVLDPSRRSDDDSTSIDIEGISNDDDARLSQRVSLXXXXXXXXXXXXXXXXXXETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 169
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BLAST of mRNA_Ecto-sp13_S_contig7349.18516.1 vs. uniprot
Match: D7FSF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSF2_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.300e-19
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 
Query:  121 ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 168
            ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL
Sbjct:  107 ETGWVGETLSKGAEAVVSGVKSAARASKPLRREADGRIVPDGDGLLNL 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7349.18516.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXK8_9PHAE1.010e-2857.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSF2_ECTSI1.300e-19100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.876
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7349contigEcto-sp13_S_contig7349:6281..7394 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7349.18516.1mRNA_Ecto-sp13_S_contig7349.18516.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7349 6159..7394 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7349.18516.1 ID=prot_Ecto-sp13_S_contig7349.18516.1|Name=mRNA_Ecto-sp13_S_contig7349.18516.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
MQSSLSVLYVFVLLWEGVVAFTSAPKARPQSRVTSFSNQRRRYYAGMAST
RRRTTRTACAASEPSSELVQDPCRRSDDGSASSDTKGISNDDDARLSQRD
LLLLATGDSEEQQEEEQEQEETGWVGETLSKGAEAVVSGVKSAARASKPL
RREADGRIVPDGDGLLNLIHRMTRGPRPQHIYFYTRDPEELDER
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