mRNA_Ecto-sp13_S_contig73395.18504.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73395.18504.1
Unique NamemRNA_Ecto-sp13_S_contig73395.18504.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: A0A7C7KJA7_9PROT (Flotillin family protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7KJA7_9PROT)

HSP 1 Score: 187 bits (476), Expect = 1.050e-52
Identity = 142/220 (64.55%), Postives = 151/220 (68.64%), Query Frame = 1
Query:    1 ARLDTERNVANYAAETRAQTAEKEAEAKRLEEQAAIXXXXXXXXXXXXXXXXXXLTRQDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG 660
            ARL+TERNVANY AETRA+TA+KEAEAKRLE++AAI                  LTRQDKAI VATKS                    EE+VKTVARVA XXXX              NAVG+TVAAEAER A+EDEA A          XXXXXXXXXXXXX  EA+GQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG
Sbjct:  244 ARLETERNVANYTAETRAETAQKEAEAKRLEDEAAIQATLAVERKQIESDRDVELTRQDKAITVATKSQEESLAAAEANKARASAVREEEQVKTVARVAEXXXXXXXXXXXXXXXXXXNAVGVTVAAEAERQASEDEAQATLITARASSEXXXXXXXXXXXXXKVEAEGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG 463          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: UPI0018724AA4 (SPFH domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018724AA4)

HSP 1 Score: 123 bits (309), Expect = 5.030e-29
Identity = 144/220 (65.45%), Postives = 148/220 (67.27%), Query Frame = 1
Query:    1 ARLDTERNVANYAAETRAQTAEKEAEAKRLEEQAAIXXXXXXXXXXXXXXXXXXLTRQDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG 660
            ARL+TERNVANYAAETRAQTA+KEAEAKRLEE+AAI                  LTRQDKAI VATKS    XXXXXXXXXXXXXXXX           XXXXX                                    XXXXXXXXXXXXXXXXXXXXXXXXX  +GQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG
Sbjct:  244 ARLNTERNVANYAAETRAQTAQKEAEAKRLEEEAAIQTRLAVERKQIESDRDVELTRQDKAITVATKSQEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG 463          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: UPI00141F84E0 (SPFH domain-containing protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141F84E0)

HSP 1 Score: 99.8 bits (247), Expect = 1.330e-20
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1
Query:  502 DGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG 660
            DGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG
Sbjct:  411 DGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVIDFG 463          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: UPI001781CB82 (SPFH domain-containing protein n=1 Tax=Pelagicoccus enzymogenes TaxID=2773457 RepID=UPI001781CB82)

HSP 1 Score: 85.9 bits (211), Expect = 8.360e-16
Identity = 57/160 (35.62%), Postives = 82/160 (51.25%), Query Frame = 1
Query:  172 QDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVI 651
            Q+ AIIVA KS                    EE+V TV   A     K + ++ A+EDAEK A+ +TVAAEA++ AA D+A A                         EA G++AIN A+N+L   +I  EL+K L +V P++M AS+K +EKI  I+++
Sbjct:  327 QEAAIIVAKKSEEKSQAEAEAAKARSNFVREEEQVVTVRETAIANRKKEIELIKAREDAEKQAIDVTVAAEADKQAALDKAEAVLTESKAAAEKIRIIAEADQKRFEVEAYGEKAINEAKNILSSELIGFELRKILAQVAPKIMEASVKPMEKIDSIKIL 486          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: A0A651HCK7_9BACT (Flotillin family protein n=1 Tax=Puniceicoccaceae bacterium TaxID=2026784 RepID=A0A651HCK7_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 9.820e-15
Identity = 57/163 (34.97%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  163 LTRQDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVI 651
            +++Q   I VA KS                    EE+V+TV   A     K V ++ A+EDA+++A+GITVAAEAER AA+D A A                         EA G+ AIN A+N+L   II  E++K + +V P++M A++K +EKI+ I++I
Sbjct:  337 ISKQVADIEVAKKSEEKSKAEASAAIAFAEKVKQEEQVETVRTTAVANRTKEVRLIKAQEDAQQDAIGITVAAEAERKAAQDRAEAALTEARANADRIRIIAEADQKRLEVEAIGERAINEAKNLLAGHIIDFEIRKIVAQVAPQIMEAAVKPMEKIESIKII 499          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: A0A7X7GNX0_9DELT (Flotillin family protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X7GNX0_9DELT)

HSP 1 Score: 82.0 bits (201), Expect = 1.810e-14
Identity = 90/163 (55.21%), Postives = 114/163 (69.94%), Query Frame = 1
Query:  163 LTRQDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVI 651
            +++Q  AI VA KS    XXXXXXXX        EEEV TV   A     K + ++ A+E+AE+ A+ +TV A AER AA+D A AXXXXXXXXXXXXXXXXXXXXXXXXX A G++AIN A+N+L   II  EL+K + ++ PEV+AAS+K +EKI  IR+I
Sbjct:  337 ISKQAAAIAVARKSEEKSXXXXXXXXARALMVKQEEEVVTVRETAVATRLKEIQLIKAREEAEQKAIDVTVRATAEREAAKDRADAXXXXXXXXXXXXXXXXXXXXXXXXXXAFGEKAINEAKNILSGEIIRFELRKLIAQLAPEVVAASVKPMEKIDSIRII 499          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: UPI0013592855 (flotillin family protein n=1 Tax=Alcanivorax sp. S71-1-4 TaxID=1177159 RepID=UPI0013592855)

HSP 1 Score: 78.6 bits (192), Expect = 2.730e-13
Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = 1
Query:  265 EEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVID 654
            EE+VKTV   A     KAV +V A+E AE+ A+GIT+AAEA++ A+ED A  XXXXXXXXXXXXXXXXXXXXXXXX EA+GQ AIN ARN L +  I LE++  LI  +P ++  S+K +E+I  I+++D
Sbjct:  346 EEQVKTVRETAVAERAKAVRLVQAREKAEQEAIGITLAAEADKKASEDRAXXXXXXXXXXXXXXXXXXXXXXXXXXVEAEGQRAINEARNALSEDQIRLEIRLELIRKLPSIIEQSVKPMERIDGIKIMD 475          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: UPI001985824B (Flotillin family protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI001985824B)

HSP 1 Score: 77.0 bits (188), Expect = 9.260e-13
Identity = 71/163 (43.56%), Postives = 96/163 (58.90%), Query Frame = 1
Query:  163 LTRQDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVI 651
            +  Q+  I VA KS                    EE+VKTV  VA     K + ++ A+E AE++AV + VAA+A+R AAED A A     XXXXXXXXXXXXXXXXX   EA G  AIN A+N+L + I+A E++K L+  +  ++ A+MK  EKI  IR++
Sbjct:  314 IANQEARIAVAKKSEELSKADAEAAAARAIMVKAEEQVKTVQEVAAAERAKEIVVIKARETAEQDAVRVIVAADADRKAAEDRAAAVRTQAXXXXXXXXXXXXXXXXXLAVEAAGLHAINVAKNLLGEGIMAFEVRKELVAKLEGIITAAMKPAEKIDSIRML 476          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: UPI001CFA9F4A (flotillin family protein n=1 Tax=Quatrionicoccus australiensis TaxID=138118 RepID=UPI001CFA9F4A)

HSP 1 Score: 76.6 bits (187), Expect = 1.250e-12
Identity = 64/163 (39.26%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  163 LTRQDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVI 651
            L  QDK I +A KSXXXXXXXX            EE+VKT   VA     K +A+V A+++A++ A+G+ V+AEAE+ AAE+ A A                         EA+G E  NAA N LD   IA+++K  L E +P ++ AS+K +EKI  I++I
Sbjct:  324 LADQDKLISIAEKSXXXXXXXXQANEARALAAKAEEQVKTAREVAIAEREKQIALVVAEQEAQQQAIGVRVSAEAEKDAAENHAQAVKIKAEALQVQYQV-----------EANGIELRNAALNTLDAEQIAMQIKMKLFEALPGIIEASVKPIEKIDGIKII 475          
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Match: UPI00200E67BC (flotillin family protein n=1 Tax=Shewanella electrodiphila TaxID=934143 RepID=UPI00200E67BC)

HSP 1 Score: 75.1 bits (183), Expect = 4.290e-12
Identity = 85/163 (52.15%), Postives = 115/163 (70.55%), Query Frame = 1
Query:  163 LTRQDKAIIVATKSXXXXXXXXXXXXXXXXXXXXEEEVKTVARVAXXXXXKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGAXXXXXXXXXXXXXXXXXXXXXXXXXEADGQEAINAARNVLDDRIIALELKKALIEVMPEVMAASMKAVEKIKDIRVI 651
            ++ QDK I VA KSXXXXXXXXXXXXXX      EE V T  +VA     K + ++ A+++AE++AVG+TV AEAE+ AAED++ A      XXXXXXXXXXXXXXXXXXXEA G++A+  A NVL D  IAL+   A +  +PE++A ++K +E I+ I+++
Sbjct:  331 VSEQDKRIAVAAKSXXXXXXXXXXXXXXKTKVEKEEGVITTRQVAEANRRKEIEVIDARKEAERDAVGVTVHAEAEKRAAEDKSSAILIEAKXXXXXXXXXXXXXXXXXXXEAAGKQALYEAENVLRDEQIALQKSLATLTALPEIVAQTVKPLENIEGIKIL 493          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73395.18504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C7KJA7_9PROT1.050e-5264.55Flotillin family protein n=1 Tax=Kiloniellaceae ba... [more]
UPI0018724AA45.030e-2965.45SPFH domain-containing protein n=1 Tax=Pelagibius ... [more]
UPI00141F84E01.330e-20100.00SPFH domain-containing protein n=1 Tax=Pelagibius ... [more]
UPI001781CB828.360e-1635.63SPFH domain-containing protein n=1 Tax=Pelagicoccu... [more]
A0A651HCK7_9BACT9.820e-1534.97Flotillin family protein n=1 Tax=Puniceicoccaceae ... [more]
A0A7X7GNX0_9DELT1.810e-1455.21Flotillin family protein n=1 Tax=Myxococcales bact... [more]
UPI00135928552.730e-1356.92flotillin family protein n=1 Tax=Alcanivorax sp. S... [more]
UPI001985824B9.260e-1343.56Flotillin family protein n=1 Tax=Burkholderiales b... [more]
UPI001CFA9F4A1.250e-1239.26flotillin family protein n=1 Tax=Quatrionicoccus a... [more]
UPI00200E67BC4.290e-1252.15flotillin family protein n=1 Tax=Shewanella electr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73395contigEcto-sp13_S_contig73395:10..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score83.6
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog491916.RHECIAT_CH0003358
Preferred nameMA20_29840
Model size660
KEGG koko:K07192
KEGG Pathwayko04910,map04910
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons1
EggNOG free text desc.Flotillin
EggNOG OGs1P50K@1224,2TTVY@28211,4B7RS@82115,COG2268@1,COG2268@2
Cds size660
COG Functional cat.S
Best tax levelRhizobiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.1615982-CDS-Ecto-sp13_S_contig73395:9..6691681464002.1615982-CDS-Ecto-sp13_S_contig73395:9..669Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73395 10..669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73395.18504.1prot_Ecto-sp13_S_contig73395.18504.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73395 10..669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73395.18504.1

>prot_Ecto-sp13_S_contig73395.18504.1 ID=prot_Ecto-sp13_S_contig73395.18504.1|Name=mRNA_Ecto-sp13_S_contig73395.18504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=220bp
ARLDTERNVANYAAETRAQTAEKEAEAKRLEEQAAIQAKLAVERRQIESD
RDVELTRQDKAIIVATKSQEESLAAAEANKARATAVREEEEVKTVARVAE
AERQKAVAIVAAKEDAEKNAVGITVAAEAERTAAEDEAGATLITARAEAE
ATKINAEADAARYTVEADGQEAINAARNVLDDRIIALELKKALIEVMPEV
MAASMKAVEKIKDIRVIDFG
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mRNA from alignment at Ecto-sp13_S_contig73395:10..669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73395.18504.1 ID=mRNA_Ecto-sp13_S_contig73395.18504.1|Name=mRNA_Ecto-sp13_S_contig73395.18504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73395:10..669+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACGCCTGGATACCGAGCGCAACGTGGCAAACTATGCCGCCGAGACCCG GGCCCAGACCGCCGAAAAAGAGGCCGAAGCCAAGCGGCTGGAGGAACAGG CGGCGATCCAGGCCAAGCTGGCGGTGGAGCGCAGGCAGATCGAATCCGAC CGTGACGTGGAGCTGACGCGCCAGGACAAGGCGATCATCGTGGCCACCAA GTCGCAGGAAGAATCGCTCGCCGCGGCCGAAGCCAACAAGGCCCGCGCCA CCGCGGTGCGCGAGGAAGAGGAAGTGAAGACCGTGGCCCGGGTGGCCGAG GCCGAACGTCAGAAGGCCGTCGCCATCGTCGCCGCCAAGGAGGACGCCGA GAAGAACGCGGTCGGCATCACCGTGGCCGCCGAGGCCGAGCGTACCGCCG CCGAGGATGAGGCGGGAGCCACCCTGATCACCGCCCGCGCCGAGGCGGAG GCGACCAAGATCAACGCCGAGGCCGACGCGGCCCGCTACACGGTGGAAGC CGACGGCCAGGAGGCGATCAACGCCGCCCGCAACGTGCTGGACGACCGCA TCATCGCCCTGGAGCTGAAAAAGGCGCTGATCGAGGTGATGCCCGAGGTC ATGGCCGCCTCCATGAAGGCGGTGGAGAAAATCAAGGACATCCGCGTCAT CGACTTCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73395:10..669+

>mRNA_Ecto-sp13_S_contig73395.18504.1 ID=mRNA_Ecto-sp13_S_contig73395.18504.1|Name=mRNA_Ecto-sp13_S_contig73395.18504.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=660bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73395:10..669+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACGCCTGGATACCGAGCGCAACGTGGCAAACTATGCCGCCGAGACCCG
GGCCCAGACCGCCGAAAAAGAGGCCGAAGCCAAGCGGCTGGAGGAACAGG
CGGCGATCCAGGCCAAGCTGGCGGTGGAGCGCAGGCAGATCGAATCCGAC
CGTGACGTGGAGCTGACGCGCCAGGACAAGGCGATCATCGTGGCCACCAA
GTCGCAGGAAGAATCGCTCGCCGCGGCCGAAGCCAACAAGGCCCGCGCCA
CCGCGGTGCGCGAGGAAGAGGAAGTGAAGACCGTGGCCCGGGTGGCCGAG
GCCGAACGTCAGAAGGCCGTCGCCATCGTCGCCGCCAAGGAGGACGCCGA
GAAGAACGCGGTCGGCATCACCGTGGCCGCCGAGGCCGAGCGTACCGCCG
CCGAGGATGAGGCGGGAGCCACCCTGATCACCGCCCGCGCCGAGGCGGAG
GCGACCAAGATCAACGCCGAGGCCGACGCGGCCCGCTACACGGTGGAAGC
CGACGGCCAGGAGGCGATCAACGCCGCCCGCAACGTGCTGGACGACCGCA
TCATCGCCCTGGAGCTGAAAAAGGCGCTGATCGAGGTGATGCCCGAGGTC
ATGGCCGCCTCCATGAAGGCGGTGGAGAAAATCAAGGACATCCGCGTCAT
CGACTTCGGC
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