mRNA_Ecto-sp13_S_contig7327.18495.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7327.18495.1
Unique NamemRNA_Ecto-sp13_S_contig7327.18495.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7327.18495.1 vs. uniprot
Match: D7FZR3_ECTSI (Pentapeptide repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR3_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.160e-50
Identity = 94/122 (77.05%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 MKLLWYLFALLPSGGDSFVSPFVPAAISSATTAGRGRSQPLEARGIAAPRTRATRTAMSVSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK 366
            MKLLW  FALL SGGDSFVSPFVPAA+SSATTAGRGRSQPL+AR                 SE+RTGLGAAVASWTLAAVL+AGVPLLV+PSP  AISGGGLDYAGLNLTGQDLS GKYKSK
Sbjct:    1 MKLLWCFFALLTSGGDSFVSPFVPAAVSSATTAGRGRSQPLDARXXXXXXXXXXXXXXXXXSEKRTGLGAAVASWTLAAVLVAGVPLLVNPSPAVAISGGGLDYAGLNLTGQDLSKGKYKSK 122
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BLAST of mRNA_Ecto-sp13_S_contig7327.18495.1 vs. uniprot
Match: A0A6H5KFC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.150e-32
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:  172 MSVSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK 366
            MS+SSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK
Sbjct:    1 MSMSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7327.18495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZR3_ECTSI3.160e-5077.05Pentapeptide repeat n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KFC5_9PHAE3.150e-3298.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7327contigEcto-sp13_S_contig7327:4861..7377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score170.6
Seed ortholog evalue6.3e-40
Seed eggNOG ortholog2880.D7FZR3
Model size516
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.Pentapeptide repeats (8 copies)
EggNOG OGs2CYH2@1,2S4CZ@2759
Ec32 ortholog descriptionPentapeptide repeat
Ec32 orthologEc-21_004050.1
Cds size516
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.3516681-CDS-Ecto-sp13_S_contig7327:4860..49151681464001.3516681-CDS-Ecto-sp13_S_contig7327:4860..4915Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7327 4861..4915 +
1681464001.3624668-CDS-Ecto-sp13_S_contig7327:5550..57011681464001.3624668-CDS-Ecto-sp13_S_contig7327:5550..5701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7327 5551..5701 +
1681464001.3716211-CDS-Ecto-sp13_S_contig7327:6138..62981681464001.3716211-CDS-Ecto-sp13_S_contig7327:6138..6298Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7327 6139..6298 +
1681464001.3809228-CDS-Ecto-sp13_S_contig7327:7227..73771681464001.3809228-CDS-Ecto-sp13_S_contig7327:7227..7377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7327 7228..7377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7327.18495.1prot_Ecto-sp13_S_contig7327.18495.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7327 4861..7377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7327.18495.1

>prot_Ecto-sp13_S_contig7327.18495.1 ID=prot_Ecto-sp13_S_contig7327.18495.1|Name=mRNA_Ecto-sp13_S_contig7327.18495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MKLLWYLFALLPSGGDSFVSPFVPAAISSATTAGRGRSQPLEARGIAAPR
TRATRTAMSVSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGG
GLDYAGLNLTGQDLSNGKYKSKDFSGSIAKEVNFSGSDLRGVRFFKADLK
KADFTGANLGTASLEEADLEG*
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mRNA from alignment at Ecto-sp13_S_contig7327:4861..7377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7327.18495.1 ID=mRNA_Ecto-sp13_S_contig7327.18495.1|Name=mRNA_Ecto-sp13_S_contig7327.18495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7327:4861..7377+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTGTTGTGGTACCTTTTTGCGCTCTTACCCTCTGGTGGAGACTC
GTTCGGTGAGGAAATCTGTAGAGACGGACTTACGTCCTCGTCTTCATGTT
CACATCAGACGCACACAAGTACATGACCCAACGACCGCCGTCAGGCAGGG
ACTGACGCGAAGCTTCGACTCTCGCACATCTCGCCCAGTCCTCTGCGATC
GAAGGAATGTGTGAATTCGTACAGCAGTGCAGAGCGTGCTATAATCACCG
CTTTACCCTGGCGTTGGCATTGTTTGCTGTGGCGTTGGAAAACAGGCATG
TCCACGTTCAGGCACCGCAGTCCAAAAATCTACTGCATGTGTGAAACATG
CGAAGTTGAGCGGGGGGAGCTGGTTGCGAGATTGCACGCTCTTGACCAAA
GCCATTCTAGAAGAGAGACTGATGTGCGTTGCGCAGCGCACTGCGCAAGC
ATTGCGAATGCATATGGCGTGGCTGACATGAGGTGAATCACTCTCGCAAA
ATCACTCGCAGCGTGTTTTTTCCCGGGAAATCCGGGTGTGGCGATAGGAA
AAGAGAGCCAGCGCCTACGAAGGTTGTTTTCTCATGCTCAGCCTTGACAT
CCGCAACTGCGCCGCAGTGCACCAACCTGTATCGGCAACTTCCCTCACAT
GAGTAACACGTTGCTCGTCTGTCTTTCTACGGGACGGCAGTGTCACCATT
CGTACCTGCTGCTATTTCGTCCGCGACGACGGCGGGACGCGGTCGGAGTC
AACCGTTAGAGGCACGAGGGATCGCCGCACCGCGCACCCGTGCTACACGA
ACAGCGATGTCTGTGTCTAGCGAACAAAGAACCGGCTTGGGGTAAGAGGT
GGCAAGGTTTCTGTCTTGTGTACAGTAACGGCACTAGAAGTCGCTTTTTC
TGTGCCATCTGAACCGACAAGGGGAAGATCGGCTCGTGTCTTGTGTAAAA
AACGGCACTAGGAGTCGCTTTTACTGTGCCATCTGAACCGAAAAGGGGAA
GATCGGCTCGAACACGATGCCATGGTTTTGTTGTGTCGGCGAAGTGCTTT
GCACAGTGCCTGGTTTGCAAAGAGGCAGGTACGACATCGTGCTTCTCGTC
CCCGCTGCAACTTGCACACACGAGAGTCCGCCGGCATACTTTGCATAATT
CGTGCCGCCCATGCGCGAGGACTCCACGCCGCCGATGGATCCTGCCGCGA
CGTCCCCACCCTTGGCGCGCGAACTGCGTGCCACAAATGTTTGTCAACCC
TTCGTGCCCCCGCCCTCCGCCGCAACAGCGCTGCCGTGGCCAGCTGGACT
CTGGCGGCCGTTCTCATGGCGGGCGTTCCCCTCCTCGTTGACCCTTCGCC
CGTGGCTGCCATCTCCGGCGGGGGGCTGGATTACGCCGGGCTAAACCTCA
CCGGGCAAGATCTGTCCAATGGAAAGTACAAGTCCAAGGTACGAAAGCGG
TTATTACAATTACTGTATGCATACGCGTAACCAGTTTTTCGAATGGGTTT
TCGTTCGGTTAATTAGAAGGTACTGAGCGGAGACCGAAGTGGTTGATGAT
GTGAAGACAACAACAGCAACTACAACAGCAATGTTATTCTTGTTTATAAC
TTATGGCAAGAGATCGTTTTTTGGGGGTGGGGTCGTTGACCCGACCTCGC
GATGTCCGTGCCTCGTACTCCGCCGCGAGAGGCGGGACCCCGCCATCAGA
ACCCAAGGCTTGGCTCAGAGCGTGCATTGGAGTTTTGGTGGACAGACCGC
GCTATCCAGTTGAACCTTGGACGCGTGACATGTTCGAAGAAAGAGGCAGA
GAGAGAGAAAGAGGGAGACAGACGACAGACAGACAGACAGAAGAGAGAGA
GAGAGAGCGAGAGCCAAAGACAGAGGCGGAGTTGCCAATGAGAAGAGATC
TCGCGCCCGCGTTATGCCCCAATTTTTTTCCCTCACGCGCGAGCTCCCTC
CCGAGCACGCCCCCGCAATTTCCCCCTTCGAAACAGCAGCCCTGTCGATG
CCAGCATAGCATTTCACGCACACGCTCTTGCTGCGGTACGAATTGCCACT
ATTTGCACCAGCTTGCCGCGGGTCGAACAGCATTAGAACTACGTGCATAG
TTTTGAGCTTCGTCACGCTTGCAACAACTGGTTGCGGGCTGGACGGCAAC
ACGTCGTCACATCAAGAAAAGGTCTGCTCGGGTAACCTGCAAGGTTTATA
TGTGTATCCCGACTACAGCAGCGGAAATGAAAAAACATGTGACTCCGACG
GAAAACACGCGAAAGATAAGATAGATTCCTGCACCAAGCCCCCCAGGTGT
GCTTGTTTCGTTTTGTTCACCATGGTTCGCTTGTGCTTTGGCCGTTTCCC
ACGCATGGACGACGCAGGACTTCAGCGGGTCGATCGCGAAGGAGGTGAAC
TTTAGCGGGTCTGACCTGCGAGGGGTGCGCTTTTTCAAGGCGGACCTGAA
GAAGGCCGACTTCACTGGCGCCAACCTGGGGACGGCCTCGCTCGAGGAGG
CCGACCTAGAAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7327:4861..7377+

>mRNA_Ecto-sp13_S_contig7327.18495.1 ID=mRNA_Ecto-sp13_S_contig7327.18495.1|Name=mRNA_Ecto-sp13_S_contig7327.18495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7327:4861..7377+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTGTTGTGGTACCTTTTTGCGCTCTTACCCTCTGGTGGAGACTC
GTTCGTGTCACCATTCGTACCTGCTGCTATTTCGTCCGCGACGACGGCGG
GACGCGGTCGGAGTCAACCGTTAGAGGCACGAGGGATCGCCGCACCGCGC
ACCCGTGCTACACGAACAGCGATGTCTGTGTCTAGCGAACAAAGAACCGG
CTTGGGCGCTGCCGTGGCCAGCTGGACTCTGGCGGCCGTTCTCATGGCGG
GCGTTCCCCTCCTCGTTGACCCTTCGCCCGTGGCTGCCATCTCCGGCGGG
GGGCTGGATTACGCCGGGCTAAACCTCACCGGGCAAGATCTGTCCAATGG
AAAGTACAAGTCCAAGGACTTCAGCGGGTCGATCGCGAAGGAGGTGAACT
TTAGCGGGTCTGACCTGCGAGGGGTGCGCTTTTTCAAGGCGGACCTGAAG
AAGGCCGACTTCACTGGCGCCAACCTGGGGACGGCCTCGCTCGAGGAGGC
CGACCTAGAAGGGTGA
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