prot_Ecto-sp13_S_contig7327.18495.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7327.18495.1
Unique Nameprot_Ecto-sp13_S_contig7327.18495.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length172
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7327.18495.1 vs. uniprot
Match: D7FZR3_ECTSI (Pentapeptide repeat n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR3_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 3.160e-50
Identity = 94/122 (77.05%), Postives = 99/122 (81.15%), Query Frame = 0 
Query:    1 MKLLWYLFALLPSGGDSFVSPFVPAAISSATTAGRGRSQPLEARGIAAPRTRATRTAMSVSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK 122
            MKLLW  FALL SGGDSFVSPFVPAA+SSATTAGRGRSQPL+AR                 SE+RTGLGAAVASWTLAAVL+AGVPLLV+PSP  AISGGGLDYAGLNLTGQDLS GKYKSK
Sbjct:    1 MKLLWCFFALLTSGGDSFVSPFVPAAVSSATTAGRGRSQPLDARXXXXXXXXXXXXXXXXXSEKRTGLGAAVASWTLAAVLVAGVPLLVNPSPAVAISGGGLDYAGLNLTGQDLSKGKYKSK 122
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BLAST of mRNA_Ecto-sp13_S_contig7327.18495.1 vs. uniprot
Match: A0A6H5KFC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.150e-32
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0 
Query:   58 MSVSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK 122
            MS+SSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK
Sbjct:    1 MSMSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGGGLDYAGLNLTGQDLSNGKYKSK 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7327.18495.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZR3_ECTSI3.160e-5077.05Pentapeptide repeat n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KFC5_9PHAE3.150e-3298.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 123..156
e-value: 4.4E-8
score: 32.6
NoneNo IPR availableGENE3D2.160.20.100coord: 98..171
e-value: 3.4E-17
score: 64.0
NoneNo IPR availablePANTHERPTHR47200FAMILY NOT NAMEDcoord: 60..170
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..171
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..29
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.644
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 104..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7327contigEcto-sp13_S_contig7327:4861..7377 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7327.18495.1mRNA_Ecto-sp13_S_contig7327.18495.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7327 4861..7377 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7327.18495.1 ID=prot_Ecto-sp13_S_contig7327.18495.1|Name=mRNA_Ecto-sp13_S_contig7327.18495.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MKLLWYLFALLPSGGDSFVSPFVPAAISSATTAGRGRSQPLEARGIAAPR
TRATRTAMSVSSEQRTGLGAAVASWTLAAVLMAGVPLLVDPSPVAAISGG
GLDYAGLNLTGQDLSNGKYKSKDFSGSIAKEVNFSGSDLRGVRFFKADLK
KADFTGANLGTASLEEADLEG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat