prot_Ecto-sp13_S_contig72989.18457.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72989.18457.1
Unique Nameprot_Ecto-sp13_S_contig72989.18457.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length55
Homology
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.890e-29
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 0
Query:    1 ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 55
            +LGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP
Sbjct:   42 QLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 96          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.860e-27
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 0
Query:    1 ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 55
            +LGECLHVLEGHT+RITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP
Sbjct:  265 QLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 319          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A835Z3T4_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.590e-9
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0
Query:    2 LGECLHVLEGHTERITGVARLDGSRLATSSA-DGSLRVWDVSSGETLHDVLLPSP 55
            LGECLH  +GHTER+ GV R +G+R   S+A D  L  WD+ +GE + ++ LP+P
Sbjct:   33 LGECLHTWKGHTERVIGVVRPEGTRQVVSAAPDAKLIFWDLDTGEKIRELELPAP 87          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A6V8MTA1_9DELT (Uncharacterized protein n=1 Tax=Geomonas paludis TaxID=2740185 RepID=A0A6V8MTA1_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 1.170e-7
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0
Query:    2 LGECLHVLEGHTERITGVA-RLDGSRLATSSADGSLRVWDVSSGETLHDVLLPS 54
            +G  L  LEGHT ++TGVA   DG+ +A+S ADGSLR+WD +SG+ L     P+
Sbjct:  630 MGNVLRYLEGHTAQVTGVAWSRDGAYIASSGADGSLRLWDANSGKLLTSTASPA 683          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A2V3J4V3_9FLOR (Transcription initiation factor TFIID subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4V3_9FLOR)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 0
Query:    1 ELGECLHVLEGHTERITGVARLDGSRLATSS-ADGSLRVWDVSSGETLHDVLLPSP 55
            E  EC+HVL GH+  +  V  LD  RL ++S  DG+LR+W+V +GE L  V +  P
Sbjct:   64 ETRECVHVLRGHSAPVVNVVSLDHGRLVSASQGDGTLRLWNVDTGEELKQVSVTKP 119          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: G9P1M7_HYPAI (NACHT_N domain-containing protein n=1 Tax=Hypocrea atroviridis (strain ATCC 20476 / IMI 206040) TaxID=452589 RepID=G9P1M7_HYPAI)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    7 HVLEGHTERITGVARLD-GSRLATSSADGSLRVWDVSSGETLHDV 50
            H+L+GH++RI   A  D G RLA+ S DG++R+WD+SSG+T H +
Sbjct:  880 HILKGHSDRIWSCAYFDDGKRLASRSDDGTIRLWDISSGKTQHTI 924          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A8E2DWT1_9PEZI (Uncharacterized protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2DWT1_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 6.610e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 0
Query:    3 GECLHVLEGHTERITGVA-RLDGSRLATSSADGSLRVWDVSSGETLH 48
            G+CL  LEGH +++  VA   D +RLATSS D ++++WD SSG+ L 
Sbjct:    2 GKCLQTLEGHIDKVWSVAFSHDSTRLATSSWDKTVKIWDASSGKCLQ 48          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A511KB64_RHOTO (Uncharacterized protein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KB64_RHOTO)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 0
Query:    5 CLHVLEGHTERITGVARLDGSRLATS-SADGSLRVWDVSSGETLH 48
            C+H L GHT  +  +  LDG  +A S S DGS+RVWD+  GE++H
Sbjct:  272 CIHTLTGHTSTVRCLRVLDGRPIAVSGSRDGSVRVWDIDKGESVH 316          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A0N0RSG8_9BASI (Wd40 repeat-like protein n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0N0RSG8_9BASI)

HSP 1 Score: 49.7 bits (117), Expect = 1.730e-5
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 0
Query:    3 GECLHVLEGHTERITGVARLD-GSRLATSSADGSLRVWDVSSGETLH 48
            G C  VL GHT  + G A L  G  +AT SADG++R+WDVS GET+ 
Sbjct:  190 GTCPRVLIGHTRAVLGSAILGRGREVATCSADGAIRLWDVSRGETVQ 236          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: UPI001FBC1039 (TIR domain-containing protein n=1 Tax=Rhizomicrobium electricum TaxID=480070 RepID=UPI001FBC1039)

HSP 1 Score: 49.7 bits (117), Expect = 1.750e-5
Identity = 24/42 (57.14%), Postives = 28/42 (66.67%), Query Frame = 0
Query:    8 VLEGHTERITGVA-RLDGSRLATSSADGSLRVWDVSSGETLH 48
            VLEGHT  +  V    DG R+AT SADG+LR+WDV SG   H
Sbjct:  274 VLEGHTGSVNSVVFSHDGRRIATGSADGTLRIWDVKSGSQTH 315          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C2_ECTSI6.890e-2998.18F-box domain containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KY61_9PHAE1.860e-2796.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z3T4_9STRA2.590e-949.09F-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6V8MTA1_9DELT1.170e-750.00Uncharacterized protein n=1 Tax=Geomonas paludis T... [more]
A0A2V3J4V3_9FLOR1.420e-644.64Transcription initiation factor TFIID subunit 5 n=... [more]
G9P1M7_HYPAI1.430e-651.11NACHT_N domain-containing protein n=1 Tax=Hypocrea... [more]
A0A8E2DWT1_9PEZI6.610e-648.94Uncharacterized protein n=1 Tax=Lepidopterella pal... [more]
A0A511KB64_RHOTO1.270e-548.89Uncharacterized protein n=1 Tax=Rhodosporidium tor... [more]
A0A0N0RSG8_9BASI1.730e-553.19Wd40 repeat-like protein n=1 Tax=Malassezia pachyd... [more]
UPI001FBC10391.750e-557.14TIR domain-containing protein n=1 Tax=Rhizomicrobi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 2..40
e-value: 3.0E-7
score: 40.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 3..40
e-value: 3.6E-8
score: 33.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 9..49
score: 13.416
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..54
e-value: 8.4E-14
score: 53.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 27..41
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 9..49
score: 12.446
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 3..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72989contigEcto-sp13_S_contig72989:499..663 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72989.18457.1mRNA_Ecto-sp13_S_contig72989.18457.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72989 499..663 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72989.18457.1 ID=prot_Ecto-sp13_S_contig72989.18457.1|Name=mRNA_Ecto-sp13_S_contig72989.18457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDV
LLPSP
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf