mRNA_Ecto-sp13_S_contig72989.18457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72989.18457.1
Unique NamemRNA_Ecto-sp13_S_contig72989.18457.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: D7G3C2_ECTSI (F-box domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.890e-29
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 165
            +LGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP
Sbjct:   42 QLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 96          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A6H5KY61_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY61_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.860e-27
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 165
            +LGECLHVLEGHT+RITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP
Sbjct:  265 QLGECLHVLEGHTQRITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSP 319          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A835Z3T4_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.590e-9
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 LGECLHVLEGHTERITGVARLDGSRLATSSA-DGSLRVWDVSSGETLHDVLLPSP 165
            LGECLH  +GHTER+ GV R +G+R   S+A D  L  WD+ +GE + ++ LP+P
Sbjct:   33 LGECLHTWKGHTERVIGVVRPEGTRQVVSAAPDAKLIFWDLDTGEKIRELELPAP 87          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A6V8MTA1_9DELT (Uncharacterized protein n=1 Tax=Geomonas paludis TaxID=2740185 RepID=A0A6V8MTA1_9DELT)

HSP 1 Score: 55.8 bits (133), Expect = 1.170e-7
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    4 LGECLHVLEGHTERITGVA-RLDGSRLATSSADGSLRVWDVSSGETLHDVLLPS 162
            +G  L  LEGHT ++TGVA   DG+ +A+S ADGSLR+WD +SG+ L     P+
Sbjct:  630 MGNVLRYLEGHTAQVTGVAWSRDGAYIASSGADGSLRLWDANSGKLLTSTASPA 683          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A2T4BU18_TRILO (WD40 repeat-like protein n=1 Tax=Trichoderma longibrachiatum ATCC 18648 TaxID=983965 RepID=A0A2T4BU18_TRILO)

HSP 1 Score: 53.9 bits (128), Expect = 5.590e-7
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    7 GECLHVLEGHTERITGVARLDGSR-LATSSADGSLRVWDVSSGETLH 144
            G CL  LEGHT  +T  A  D SR LA+SS D ++RVWD+++G+T+H
Sbjct:  848 GSCLMTLEGHTNTVTSTAFSDDSRFLASSSNDKTIRVWDLTTGDTIH 894          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A2V3J4V3_9FLOR (Transcription initiation factor TFIID subunit 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4V3_9FLOR)

HSP 1 Score: 52.8 bits (125), Expect = 1.420e-6
Identity = 25/56 (44.64%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    1 ELGECLHVLEGHTERITGVARLDGSRLATSS-ADGSLRVWDVSSGETLHDVLLPSP 165
            E  EC+HVL GH+  +  V  LD  RL ++S  DG+LR+W+V +GE L  V +  P
Sbjct:   64 ETRECVHVLRGHSAPVVNVVSLDHGRLVSASQGDGTLRLWNVDTGEELKQVSVTKP 119          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: G9P1M7_HYPAI (NACHT_N domain-containing protein n=1 Tax=Hypocrea atroviridis (strain ATCC 20476 / IMI 206040) TaxID=452589 RepID=G9P1M7_HYPAI)

HSP 1 Score: 52.8 bits (125), Expect = 1.430e-6
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   19 HVLEGHTERITGVARLD-GSRLATSSADGSLRVWDVSSGETLHDV 150
            H+L+GH++RI   A  D G RLA+ S DG++R+WD+SSG+T H +
Sbjct:  880 HILKGHSDRIWSCAYFDDGKRLASRSDDGTIRLWDISSGKTQHTI 924          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A8E2DWT1_9PEZI (Uncharacterized protein n=1 Tax=Lepidopterella palustris CBS 459.81 TaxID=1314670 RepID=A0A8E2DWT1_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 6.610e-6
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    7 GECLHVLEGHTERITGVA-RLDGSRLATSSADGSLRVWDVSSGETLH 144
            G+CL  LEGH +++  VA   D +RLATSS D ++++WD SSG+ L 
Sbjct:    2 GKCLQTLEGHIDKVWSVAFSHDSTRLATSSWDKTVKIWDASSGKCLQ 48          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A511KB64_RHOTO (Uncharacterized protein n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A511KB64_RHOTO)

HSP 1 Score: 50.1 bits (118), Expect = 1.270e-5
Identity = 22/45 (48.89%), Postives = 30/45 (66.67%), Query Frame = 1
Query:   13 CLHVLEGHTERITGVARLDGSRLATS-SADGSLRVWDVSSGETLH 144
            C+H L GHT  +  +  LDG  +A S S DGS+RVWD+  GE++H
Sbjct:  272 CIHTLTGHTSTVRCLRVLDGRPIAVSGSRDGSVRVWDIDKGESVH 316          
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Match: A0A0N0RSG8_9BASI (Wd40 repeat-like protein n=1 Tax=Malassezia pachydermatis TaxID=77020 RepID=A0A0N0RSG8_9BASI)

HSP 1 Score: 49.7 bits (117), Expect = 1.730e-5
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    7 GECLHVLEGHTERITGVARLD-GSRLATSSADGSLRVWDVSSGETLH 144
            G C  VL GHT  + G A L  G  +AT SADG++R+WDVS GET+ 
Sbjct:  190 GTCPRVLIGHTRAVLGSAILGRGREVATCSADGAIRLWDVSRGETVQ 236          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72989.18457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3C2_ECTSI6.890e-2998.18F-box domain containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KY61_9PHAE1.860e-2796.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835Z3T4_9STRA2.590e-949.09F-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A6V8MTA1_9DELT1.170e-750.00Uncharacterized protein n=1 Tax=Geomonas paludis T... [more]
A0A2T4BU18_TRILO5.590e-753.19WD40 repeat-like protein n=1 Tax=Trichoderma longi... [more]
A0A2V3J4V3_9FLOR1.420e-644.64Transcription initiation factor TFIID subunit 5 n=... [more]
G9P1M7_HYPAI1.430e-651.11NACHT_N domain-containing protein n=1 Tax=Hypocrea... [more]
A0A8E2DWT1_9PEZI6.610e-648.94Uncharacterized protein n=1 Tax=Lepidopterella pal... [more]
A0A511KB64_RHOTO1.270e-548.89Uncharacterized protein n=1 Tax=Rhodosporidium tor... [more]
A0A0N0RSG8_9BASI1.730e-553.19Wd40 repeat-like protein n=1 Tax=Malassezia pachyd... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72989contigEcto-sp13_S_contig72989:499..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score113.2
Seed ortholog evalue3.8e-23
Seed eggNOG ortholog2880.D7G3C2
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-21_002790.1
Cds size165
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.6038446-CDS-Ecto-sp13_S_contig72989:498..6631681463997.6038446-CDS-Ecto-sp13_S_contig72989:498..663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72989 499..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72989.18457.1prot_Ecto-sp13_S_contig72989.18457.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72989 499..663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72989.18457.1

>prot_Ecto-sp13_S_contig72989.18457.1 ID=prot_Ecto-sp13_S_contig72989.18457.1|Name=mRNA_Ecto-sp13_S_contig72989.18457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
ELGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDV
LLPSP
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mRNA from alignment at Ecto-sp13_S_contig72989:499..663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72989.18457.1 ID=mRNA_Ecto-sp13_S_contig72989.18457.1|Name=mRNA_Ecto-sp13_S_contig72989.18457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72989:499..663- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACTAGGGGAATGCCTCCACGTGCTAGAAGGGCACACCGAGCGCATCAC GGGGGTGGCAAGGCTAGACGGGTCCCGCCTGGCCACCAGCTCCGCGGACG GTAGCCTTCGGGTGTGGGACGTGTCGTCGGGGGAGACGCTGCATGACGTG CTGCTGCCCTCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72989:499..663-

>mRNA_Ecto-sp13_S_contig72989.18457.1 ID=mRNA_Ecto-sp13_S_contig72989.18457.1|Name=mRNA_Ecto-sp13_S_contig72989.18457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72989:499..663- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACTAGGGGAATGCCTCCACGTGCTAGAAGGGCACACCGAGCGCATCAC
GGGGGTGGCAAGGCTAGACGGGTCCCGCCTGGCCACCAGCTCCGCGGACG
GTAGCCTTCGGGTGTGGGACGTGTCGTCGGGGGAGACGCTGCATGACGTG
CTGCTGCCCTCGCCG
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