mRNA_Ecto-sp13_S_contig7294.18448.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7294.18448.1
Unique NamemRNA_Ecto-sp13_S_contig7294.18448.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: A0A6H5J685_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J685_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 3.010e-117
Identity = 179/186 (96.24%), Postives = 182/186 (97.85%), Query Frame = 3
Query:    3 EVVLSVDTPSSPDSCITVDLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETYEPPMGLLEWFISKRRGVSLQAVSPPPVAINPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVSAPKDFTVVGFPKGRAVRDDDPGDVLVSGGEYRLEGDVIQFFQVAEEYRQ 560
            EVVLSVDTPSSPDSCITVDLARNLTRAELERFGADRTGIPDYAM PAGAHVISRMTSETYEPPMGLLEWF SKRRG SLQAVSPPPVAINPESRLGRCWPMKGSDGRLTVKL+RTIKVESISLEHAPREVLLN+GVSAPKDFTVVG+PKGR VRDDDPGDVLVSGGEYRLEGDVIQFFQVAEEYRQ
Sbjct:  283 EVVLSVDTPSSPDSCITVDLARNLTRAELERFGADRTGIPDYAMEPAGAHVISRMTSETYEPPMGLLEWFRSKRRGASLQAVSPPPVAINPESRLGRCWPMKGSDGRLTVKLARTIKVESISLEHAPREVLLNRGVSAPKDFTVVGYPKGRVVRDDDPGDVLVSGGEYRLEGDVIQFFQVAEEYRQ 468          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: D8LC58_ECTSI (Sad1/Unc-84 domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC58_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 3.930e-45
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 3
Query:  309 GSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVSAPKDFTVVGFPKGRAVRDDDPGDVLVSGGEYRLEGDVIQFFQVAEEYRQ 560
            GSDGRLTVKL+RTIKVESISLEHAPREVLLNKGVSAPKDFTVVG+PKGR VRDDDPGDVLVSGGEYRLEGDVIQFF+VAEEYRQ
Sbjct:   10 GSDGRLTVKLARTIKVESISLEHAPREVLLNKGVSAPKDFTVVGYPKGRVVRDDDPGDVLVSGGEYRLEGDVIQFFEVAEEYRQ 93          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: D8LC59_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC59_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.880e-29
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 3
Query:    3 EVVLSVDTPSSPDSCITVDLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETYEP 188
            EVVLSVDTPSSPDSC+TVDLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETYEP
Sbjct:  289 EVVLSVDTPSSPDSCVTVDLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETYEP 350          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: A0A8J4WPX6_9TREM (SUN domain-containing protein 2 n=1 Tax=Paragonimus heterotremus TaxID=100268 RepID=A0A8J4WPX6_9TREM)

HSP 1 Score: 99.4 bits (246), Expect = 2.690e-18
Identity = 63/161 (39.13%), Postives = 87/161 (54.04%), Query Frame = 3
Query:   81 AELERFGADRTGIPDYAMGPAGAHVISRMTSETYEPPMGLLEWFISKRRGVSLQAVSPPPVAI-NPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVS--APKDFTVVGFPKGRAVRDDDPGDVLVSGGEYRLEGDVIQFFQVAEEY 554
            A LERF ADRTG+PD+A+  AG  VI+   + TY     L   F     G+ L  +S  P  I +P +  G CWP  GS G++ ++LS  I + ++SLEH PR VL   G S  APKDF +    KG A   D+ G V++    Y ++G  IQ + +   Y
Sbjct:  720 ASLERFAADRTGLPDFALESAGGTVIATRCTRTYTGGAALFSLF-----GIPLVRLSNSPRTILHPSNNAGDCWPFHGSSGQVVIRLSDPIVINAVSLEHLPR-VLARTGRSDSAPKDFLI----KGLASEVDEEG-VVLGNFTYNIDGPSIQTYPIKASY 869          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: A0A1Y1YAC7_9FUNG (SUN domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YAC7_9FUNG)

HSP 1 Score: 93.6 bits (231), Expect = 4.020e-18
Identity = 50/131 (38.17%), Postives = 80/131 (61.07%), Query Frame = 3
Query:   54 VDLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETYEPPMGLLEWFISKRRGVSLQAV-SPPPVAINPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVSAPKDFTVVGF 443
            V L  +L +  L +  AD    PD+AM  AGA VI+++TS +Y P  G     +++  G++ +   +PP +A++P++ LGRCW   GS G+LT++LSRTI     ++EH  ++V ++   SAPK+  V GF
Sbjct:   23 VGLIEDLIQGTLFKHTADTIAKPDFAMYSAGARVITKLTSPSYLPQTGSFLGKLAQVFGINTRKNGNPPAIAMDPDTHLGRCWAFPGSQGQLTIQLSRTINATDFTIEHVDQQVAIDLR-SAPKNIEVYGF 152          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: A0A5J4NTC8_9TREM (SUN domain-containing protein 1/2 n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4NTC8_9TREM)

HSP 1 Score: 98.2 bits (243), Expect = 7.340e-18
Identity = 62/161 (38.51%), Postives = 86/161 (53.42%), Query Frame = 3
Query:   81 AELERFGADRTGIPDYAMGPAGAHVISRMTSETYEPPMGLLEWFISKRRGVSLQAVSPPPVAI-NPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVS--APKDFTVVGFPKGRAVRDDDPGDVLVSGGEYRLEGDVIQFFQVAEEY 554
            A LERF ADRTG+PD+A+  AG  VI+   + TY     L   F     G+ L  +S  P  I +P +  G CWP  GS G++ ++LS  I + ++SLEH PR VL   G S  APKDF +    KG     D+ G V++    Y ++G  IQ + +   Y
Sbjct:  970 ASLERFAADRTGLPDFALESAGGTVIATRCTRTYTGGAALFSLF-----GIPLVRLSNSPRTILHPSNNAGDCWPFHGSSGQVVIRLSDPILINAVSLEHLPR-VLARTGRSDSAPKDFLI----KGLTSEVDEEG-VILGNFTYNIDGPSIQTYPIKASY 1119          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: A0A8H7Q9P9_9FUNG (SUN domain-containing protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q9P9_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 7.890e-18
Identity = 56/175 (32.00%), Postives = 99/175 (56.57%), Query Frame = 3
Query:   54 VDLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETYE-PPMGLLEWFISKRRGVSLQAVSPPPVAINPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVSAPKDFTV-------VGFPKGRAVRDDDPGDVLVSGGEYRLEG-DVIQFFQVAEE 551
            +D+   +    + ++  D   +PDYA+  +GA +I R+TS TYE  P   L+W I K   +  +  SP   A+ P++ +G+CWPM G++G + + LS+ IKV  +++EHA ++VLL++  SAPK+F +       +G     A+ D     + ++ G+Y  E  + +Q F V+ +
Sbjct:  589 MDIVNRMIDEAILKYHQDYLALPDYALASSGARIIPRLTSPTYELEPTDNLKWLIHKV--IPFRDTSPAITALYPDTNVGQCWPMVGNNGSIGILLSQPIKVTGVTIEHAGKQVLLDRR-SAPKNFALWGVYGEHLGQTADGALGDQSQHVIELTSGQYDAEDPNAVQSFPVSPQ 760          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: A0A316YM44_9BASI (SUN domain-containing protein n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YM44_9BASI)

HSP 1 Score: 89.7 bits (221), Expect = 3.750e-15
Identity = 49/140 (35.00%), Postives = 73/140 (52.14%), Query Frame = 3
Query:   39 DSCITVDLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETY-----EPPMGLLEWFISKRRGVSLQAVSPPPVAINPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVSAPKDFTVVGF 443
            D     D    L +A L+++ ADRTG PD+A+  AG  +I  +TS T+       P  +  WF ++    S      P +AI+ ++  G CWP  G +G+L + LSR I V  ++L+H P E    +  SAP+D TV G 
Sbjct:  862 DDITAADAVIALIQAALDKYSADRTGKPDFALATAGGRIIPSLTSPTFADVRARAPSYISTWFGARGNSPSPIVHRVPHLAIHHDTSQGMCWPFAGEEGQLGIGLSRKIIVTDVTLDHLPLENAYGEDRSAPRDVTVWGL 1001          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: A0A2T9Y0H4_9FUNG (SUN domain-containing protein n=1 Tax=Smittium megazygosporum TaxID=133381 RepID=A0A2T9Y0H4_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 1.080e-14
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   87 LERFGADRTGIPDYAMGPAGAHVISRMTSETYEPPMGLLEWFISKRRGVSLQAVSPPPVAINPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVSAPKDFTVVGF 443
            L +F +D    PD+A+  AGA VI + T+E++ P +      I K+ G+     + P VA++P   LG CWPMKGS+G L +KL+R IK    ++EH  + + ++   S+PK+  V G+
Sbjct:  676 LPKFSSDYRNQPDFALYSAGARVIRKETTESWSPKLKTFSGRILKKLGILQYPTNSPAVALDPYVNLGECWPMKGSNGVLAIKLARRIKPTGFAIEHVIKSLAIDLS-SSPKELEVWGY 793          
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Match: UPI00083C77AE (SUN domain-containing protein 2-like n=1 Tax=Nicrophorus vespilloides TaxID=110193 RepID=UPI00083C77AE)

HSP 1 Score: 85.9 bits (211), Expect = 1.630e-14
Identity = 54/164 (32.93%), Postives = 82/164 (50.00%), Query Frame = 3
Query:   57 DLARNLTRAELERFGADRTGIPDYAMGPAGAHVISRMTSETYEPPMGLLEWFISKRRGVSLQAVSP-PPVAINPESRLGRCWPMKGSDGRLTVKLSRTIKVESISLEHAPREVLLNKGVS-APKDFTVVGFPKGRAVRDDDPGDVLVSGGEYRLEGDVIQFFQV 542
            D  +   +  +E +GAD+ G PDYA+G AGA ++S  T  T E   G +  F     G +L A +  P + +NP    G CW  KGS G + +KL   I +  ISLEH P+ V  +  VS AP +F+  G      +  +D   V +    Y+ +   +Q+F +
Sbjct:  183 DDVKKAVKTAMEVYGADKIGKPDYALGTAGASIVS--TRNTIEYTAGNIISFF----GYTLCASNKGPQIILNPSVSPGECWAFKGSSGAVAIKLLTPIHINGISLEHIPKSVAPSHDVSSAPNEFSAWGL-----LYPEDHAGVFLGRFNYKTDSSPLQYFPI 335          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7294.18448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J685_9PHAE3.010e-11796.24SUN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LC58_ECTSI3.930e-4595.24Sad1/Unc-84 domain-containing protein, putative n=... [more]
D8LC59_ECTSI4.880e-2998.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J4WPX6_9TREM2.690e-1839.13SUN domain-containing protein 2 n=1 Tax=Paragonimu... [more]
A0A1Y1YAC7_9FUNG4.020e-1838.17SUN domain-containing protein n=1 Tax=Basidiobolus... [more]
A0A5J4NTC8_9TREM7.340e-1838.51SUN domain-containing protein 1/2 n=1 Tax=Paragoni... [more]
A0A8H7Q9P9_9FUNG7.890e-1832.00SUN domain-containing protein n=1 Tax=Umbelopsis v... [more]
A0A316YM44_9BASI3.750e-1535.00SUN domain-containing protein n=1 Tax=Acaromyces i... [more]
A0A2T9Y0H4_9FUNG1.080e-1436.97SUN domain-containing protein n=1 Tax=Smittium meg... [more]
UPI00083C77AE1.630e-1432.93SUN domain-containing protein 2-like n=1 Tax=Nicro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7294contigEcto-sp13_S_contig7294:2960..7081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1482
Hectar predicted targeting categoryother localisation
Exons5
Cds size750
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7294.18448.1prot_Ecto-sp13_S_contig7294.18448.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7294 3227..3976 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.9497921-UTR-Ecto-sp13_S_contig7294:2959..32261681463996.9497921-UTR-Ecto-sp13_S_contig7294:2959..3226Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7294 2960..3226 -
1681463996.971576-UTR-Ecto-sp13_S_contig7294:3976..40031681463996.971576-UTR-Ecto-sp13_S_contig7294:3976..4003Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7294 3977..4003 -
1681463996.9810355-UTR-Ecto-sp13_S_contig7294:4767..48961681463996.9810355-UTR-Ecto-sp13_S_contig7294:4767..4896Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7294 4768..4896 -
1681463996.9918623-UTR-Ecto-sp13_S_contig7294:5360..54811681463996.9918623-UTR-Ecto-sp13_S_contig7294:5360..5481Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7294 5361..5481 -
1681463997.0012076-UTR-Ecto-sp13_S_contig7294:6173..62671681463997.0012076-UTR-Ecto-sp13_S_contig7294:6173..6267Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7294 6174..6267 -
1681463997.011112-UTR-Ecto-sp13_S_contig7294:6987..70811681463997.011112-UTR-Ecto-sp13_S_contig7294:6987..7081Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7294 6988..7081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.9604683-CDS-Ecto-sp13_S_contig7294:3226..39761681463996.9604683-CDS-Ecto-sp13_S_contig7294:3226..3976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7294 3227..3976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7294.18448.1

>prot_Ecto-sp13_S_contig7294.18448.1 ID=prot_Ecto-sp13_S_contig7294.18448.1|Name=mRNA_Ecto-sp13_S_contig7294.18448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
MMTPGTFLSAEGSIAWRGTSSSSSKSPRSIDSESVRVFQTSWHIVKVGTS
SCCVRQHRVLICCALSIQSDTRFQFSSSSFAGWVGGIPLFGGPREGSHVS
ACFITSMDGANRLTNGKMSVSVKVRTEMLRKAMIWGPVSVCVSFLSASTA
LKCVCVFVISIDRANRLIDEKSSVLVRLKTQTTSICHDLCVYLSCMEKGT
NISSIFYGLNVGPRLTPIRRTLTASVDRSFARSRAGRHRQPLDKHPGST*
back to top

mRNA from alignment at Ecto-sp13_S_contig7294:2960..7081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7294.18448.1 ID=mRNA_Ecto-sp13_S_contig7294.18448.1|Name=mRNA_Ecto-sp13_S_contig7294.18448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7294:2960..7081- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGGTGGTGCTTTCCGTGGATACGCCTTCCTCCCCTGATTCCTGCATC ACGGTTGATCTTGCTCGTAACCTAACCAGGGCTGAGCTGGAGAGGTAAGT CAAAAGGGGGAAACATGGATGGGAATGGAGACCAAGCGTCGAGTCGGGTT CGATTGCCCCTTTCTCGTGCGGCCTATTATACATGTACTACTACTACTTT TACTTCTACATACTAATACCATTACTTAGACACACCAACCAGATCGGCTT GTTTGGGCCGAATATCCCGCGCGTCGCGTGAAAACACGCCGCGATTCATC CGAACAAAATGAATACATCGGAAATCTCGCACACTCGACGAAGAAGTTGC CATTGGAAGTAGCAAATATTCTACGGCATGTTTGTTTTCTCATGGTGAAG GTTGCCCCACCACCAAAGAACAAGAATTGCCAGGCGATCATGAATTTTAT TTTTTCCCTCTCCAGGCACGTTCTTGTGTATCTGCGAACCGAATAGGAGA TACGTTGCTCATGACGGCAGGAAGTTACGTACAGCATAACTCAAACGAGG TGTCAGATGCGGATTGATGGTCGTCTGTATTGTATTTTGGCATTGGTATC CCCCACGCGAACGTCCATCTTGAGACTTGCCGCCGCAAGTTTGGCTTCAT GCACACAGCCAATTTCGAGCAACCCGACAATACACTACTGTGGTCGCCAA CGAAAAGACGGACAAGTCCGAAGAAGCATGTATTAGCGAACCCCTTCCCC GAAGTTCGCACGAAGCGAGTACAAACACGGATGGTGCTTTCGTGTTTTTG TATCACAATCATAGGTTTGGTGCGGATCGAACTGGGATCCCTGACTATGC GATGGGACCTGCCGGCGCCCACGTGATCTCTAGGATGACCAGTGAAACCT ACGAACCGGTGCGTGCGTCTGCCCAACGTTCGTTTGTTACAGTAGTTTAC GCAGGTTTTTCTAAGCGAGTAAACATACTGGATACAGTAATGAATCGGCT AAATTGGGGTTAGGGTTAGGGTTAGGGTTGCGGTCTGCGTGCCCCCTCCC TGGTCTTTTTTCGTAATAACCTTACTCTCTCTGCGTTGTAGGCAGTCTCC ATTTGGGTTAGGGTTAGGGTTAGCAGAGCTGTTTCATTTATTTTTGTGGT TGTTTGCTGGCCATGCTTTTGGTATCCTGCCCAACAGTAAGGGCACCTGA ACTCGAAGCGCAAATTTATGCAAAAGGGCGAGACGACATCGTAGCACGAT TGTGTCAGTTGTCCTGGCTGTTGATGTCAACCTCTGCTGATTGTCGTGCG TGAAATTGTGAGGCGGGCGCCAGCATGTGAAGTCTGTCCTCTCGCCAATG GCTCACAGAGCCGTCCTCATTGTCTCGATTGTTTCCGGTGGCACGAAGGT GTGCCAGGCCTATTTCGCGCTTGTTGAAGGGCTGGGCTAGTGTGCGAGTC GTGTGTTCCCCGTTGTTTTCCTCTGCCCTTGGGTCGTCTCGAGCGCCGCC GATTTTATCTCGCTCCACACCCTAGTATTTGTCTCTGATGAATTGGTTCG TTGGGCTCGCTTTCACCCATGGCCATGTCTCAACCCTCTCGCCACTCAAG CCGATGGGACTCCTGGAATGGTTTATCAGCAAGAGGCGAGGGGTCTCCCT CCAGGCTGTCAGCCCCCCACCGGTGGCCATCAACCCGGAGTCGCGCCTGG GCAGATGCTGGCCCATGAAGGGTGAGACGGGCTGAAACGTTTTGGGAGTG CTCGTCGCTGTCGGTGCTGCTCTGCCTCGAGCCTAAGCCGGCCTGTCAAG CTCTAGAAGCTTGACCCCTTATCGGTGTGGGACGCAGTTTGTGAGCCTCA GCGCCCGTGATTTTCCTTTGTACCAGTCCTGTGTGCATCACAACGGTGGC GAGAGGGAGGGGTACGCACAATCATGCACGCCACAGCAGCAGTTGGTGTG GCCATCAAGTTGGACTGAGGGGATCTTGGACTTATGCAGGGGAATTTTTT ATGACATTTTGTGGAGTGTTGATCGCGTCGGCTCATCGACATCCTCTATG TTTGGCGTTCTGCGATGCATTGGTGTTGATGACGTTTTGCGGAGTGTTGA CGCTTGATTGCCTCGGCTCATCGACACCCTTAGAGGTTCGTGCTCTGCGA TGCGTGCATGCATATCTCCGACGTTATTGTGCCAGGTTCCGATGGAAGGC TGACAGTGAAGCTGTCTCGGACGATCAAGGTTGAGTCGATATCGCTCGAG CACGCCCCGCGAGAGGTGCTATTGAACAAGGGCGTTTCTGCACCGAAGGA TTTCACCGTCGTCGGTGAGAGGGAAAACGTTGGGCTTGCATGCGCAGCCT CTAATTAGTCACCACTTCCCCTCGATGTATGCGTGAAGCAGCGAGTGCCA GAGGCGAAGTAACATGACTAAATACAAAATTGAAGTTCAGGAGTGGGCAG AGGGGCCGGCGGTTGTTTTTCGTTTTAGGGACGGGGGTTGACTAGCTTGT AATCGGTCATGCCGAAGCCTTTGATTCCCGACCAGTGATGCGGGGGGCAG CCGTACCGGACTTCGCAAACAACTCACGGCCCACAGAGGTGTAACGTTGC TCTGTTTGGGGCGCCGGGGTTCCCAAGGTCGCACAGGGGGTCTTCCTGGT TAAAGTATTGCGTTGTAGGGTCGTCGTACGTTTTACGAAATCATGGAACT GTCATAGTCGCACTTGGAAGAGAGACTCGGGCGGTGCATGATGGACAAAT GCCGTTGGTGAGAGCGCGCGGGGGGGGGGGGGGGGGTTCCCGGGGCCGCG GGGACCTCCCTTTTGGGGGAAATTTTTTTTTTTTCAANNNNNNNNNNGCC GGGGGGAGTGGGGAGGGGGGGGGGGGGTGGGAGAGAAGGCAGGGGTGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCGTTCCGCGGCCGGGGCAG ACCTACCTCTTCGGGAAAGTCTCTCCTTCTCGAACGTGAACGATGACCCA AGGTTCGCGTTGTCTCTCTTGGCCTGGACGGGAACGTGCACGCGATGTCT TCCTGTACGGGGTTAATTTTTGTTTCAGGTTTTCCCAAGGGTCGAGCGGT AAGGGATGATGACCCCGGGGACGTTCTTGTCAGCGGAGGGGAGTATCGCC TGGAGGGGGACGTCATCCAGTTCTTCCAAGTCGCCGAGGAGTATCGACAG TGAGTCTGTAAGGGTCTTTCAGACGTCTTGGCACATTGTCAAGGTTGGAA CAAGCTCGTGTTGTGTACGGCAGCATCGTGTCCTTATCTGTTGTGCCCTC TCGATCCAGAGCGACACCCGATTCCAGTTTTCTTCATCTTCCTTTGCCGG CTGGGTTGGTGGTATTCCGCTTTTTGGTGGACCGAGAGAGGGCAGTCATG TGTCGGCGTGTTTTATTACTAGCATGGACGGCGCTAACCGGCTGACAAAT GGAAAGATGTCAGTCTCAGTGAAGGTGAGAACAGAAATGCTTCGAAAGGC CATGATCTGGGGCCCCGTGAGTGTGTGTGTGTCTTTTTTATCAGCATCGA CCGCGCTTAAGTGTGTGTGTGTCTTTGTTATTAGCATCGACCGCGCCAAC CGGCTGATCGATGAAAAGTCGTCAGTCTTAGTGCGGTTGAAAACACAAAC CACTTCTATCTGCCATGACCTGTGTGTGTACCTTTCTTGCATGGAAAAGG GAACAAACATATCTTCCATCTTTTACGGTTTGAACGTGGGCCCGAGGCTC ACACCCATACGCCGTACGCTAACTGCTTCCGTAGATCGTAGCTTTGCGCG ATCGCGTGCAGGCCGACATCGTCAGCCACTCGACAAGCACCCCGGGAGTA CATAGTCATGCCCAATGCCCGGCGAGAAACGCCAAACAAGCTCACTTAGA CATCGCCCTGCGCAGCGGCGGGAGTTTGGTTCCAATTCTTTTATTCCCAC TGCGACCCGGCCCTAATGGCGACAGTTTCGCTGTAAATAACCCCAACTCT TCACTGACAATGACACGTGCGGAATCTTCGTGCCATGTTTTTTTTCGTTT TCGACCGGTCGACGAGCATTGTCTTCTCCACGCTCAACTCCCTTGCCTTG GGCCCCGCCGCCCGTCGACCGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7294:2960..7081-

>mRNA_Ecto-sp13_S_contig7294.18448.1 ID=mRNA_Ecto-sp13_S_contig7294.18448.1|Name=mRNA_Ecto-sp13_S_contig7294.18448.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7294:2960..7081- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACCCCGGGGACGTTCTTGTCAGCGGAGGGGAGTATCGCCTGGAG
GGGGACGTCATCCAGTTCTTCCAAGTCGCCGAGGAGTATCGACAGTGAGT
CTGTAAGGGTCTTTCAGACGTCTTGGCACATTGTCAAGGTTGGAACAAGC
TCGTGTTGTGTACGGCAGCATCGTGTCCTTATCTGTTGTGCCCTCTCGAT
CCAGAGCGACACCCGATTCCAGTTTTCTTCATCTTCCTTTGCCGGCTGGG
TTGGTGGTATTCCGCTTTTTGGTGGACCGAGAGAGGGCAGTCATGTGTCG
GCGTGTTTTATTACTAGCATGGACGGCGCTAACCGGCTGACAAATGGAAA
GATGTCAGTCTCAGTGAAGGTGAGAACAGAAATGCTTCGAAAGGCCATGA
TCTGGGGCCCCGTGAGTGTGTGTGTGTCTTTTTTATCAGCATCGACCGCG
CTTAAGTGTGTGTGTGTCTTTGTTATTAGCATCGACCGCGCCAACCGGCT
GATCGATGAAAAGTCGTCAGTCTTAGTGCGGTTGAAAACACAAACCACTT
CTATCTGCCATGACCTGTGTGTGTACCTTTCTTGCATGGAAAAGGGAACA
AACATATCTTCCATCTTTTACGGTTTGAACGTGGGCCCGAGGCTCACACC
CATACGCCGTACGCTAACTGCTTCCGTAGATCGTAGCTTTGCGCGATCGC
GTGCAGGCCGACATCGTCAGCCACTCGACAAGCACCCCGGGAGTACATAG
back to top