mRNA_Ecto-sp13_S_contig7293.18447.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7293.18447.1
Unique NamemRNA_Ecto-sp13_S_contig7293.18447.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: D8LBW2_ECTSI (Signal peptide peptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW2_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 3.230e-67
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1
Query:   10 IDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSARSFTAEEDAYFGRGAMA 366
            IDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSARSFTAEEDAYFGRGAMA
Sbjct:  506 IDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSARSFTAEEDAYFGRGAMA 624          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A5J4Z7N2_PORPP (Serine protease SPPA, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7N2_PORPP)

HSP 1 Score: 134 bits (338), Expect = 2.750e-34
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    7 QIDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELF-SARSFTAEEDAYFGRGA 360
            ++  V++RV SPGG A ASD+MWRE+R+LRE  K V+AS+ DVAASGGYY++M C+ IV +E ++TGSIGVV+A L + EL +KIG   E +S+GKYAELF   RSFT EE  YF  GA
Sbjct:  424 RVKAVILRVDSPGGSALASDVMWRELRKLREK-KPVIASMGDVAASGGYYLSMACDEIVAEERTLTGSIGVVTAKLSLEELFKKIGFVRENLSRGKYAELFVDNRSFTREEAEYFRAGA 541          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: UPI00098DE2EA (serine protease SPPA, chloroplastic n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098DE2EA)

HSP 1 Score: 131 bits (330), Expect = 3.470e-33
Identity = 69/122 (56.56%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 YPQIDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA--RSFTAEEDAYFGRGA 360
            Y  +  VV+R+ SPGGDA ASDLMWRE+R L  S K V+AS++DVAASGGYY+AM  + IV ++L++TGSIGVV+    +G+L E+IG   E+IS+GKYAELFSA  RSF  +E   F + A
Sbjct:  433 YKAVKAVVLRIDSPGGDALASDLMWREIRLLAAS-KPVIASMSDVAASGGYYMAMAAQTIVAEKLTLTGSIGVVTGKFSLGKLYERIGFNKEIISRGKYAELFSADQRSFRPDEAELFEKSA 553          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A371ERT0_MUCPR (Serine protease SPPA, chloroplastic (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371ERT0_MUCPR)

HSP 1 Score: 124 bits (311), Expect = 5.110e-33
Identity = 64/115 (55.65%), Postives = 85/115 (73.91%), Query Frame = 1
Query:   22 VVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA--RSFTAEEDAYFGRGA 360
            ++R+ SPGGDA ASDLMWRE++ L  S K V+AS+ADVAASGGYY+AMG + IV + L++TGSIGVV+    +G+L EKIG   E+IS+G+YAEL +A  R F  +E   F + A
Sbjct:  100 IIRIDSPGGDALASDLMWREIQLLAAS-KPVIASMADVAASGGYYMAMGADAIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRPDEAELFAKSA 213          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A7S0X169_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0X169_9CHLO)

HSP 1 Score: 131 bits (329), Expect = 5.140e-33
Identity = 69/118 (58.47%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   10 IDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA-RSFTAEEDAYFGRGA 360
            +  VV+RV SPGGDA ASDLMWREV++L E  K V+AS+ADVAASGGYYIAM C +IV + L++TGSIGVV+    +GEL  K+G T ELIS+G++AEL +  R+F +EE   F   A
Sbjct:  409 VAAVVLRVDSPGGDALASDLMWREVKKLAEK-KPVIASMADVAASGGYYIAMACSKIVAEPLTVTGSIGVVTGKFNLGELYAKVGYTKELISRGRFAELLADNRAFNSEEARLFEEAA 525          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A7C9AD89_OPUST (Peptidase_S49 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AD89_OPUST)

HSP 1 Score: 124 bits (311), Expect = 7.610e-33
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   19 VVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA--RSFTAEEDAYFGRGA 360
            VV+R+ SPGGDA ASDL+WRE+R L    K V+AS+ADVAASGGYYIAM    IV + L++TGSIGVV     +G+L EKIG    +ISKGKYAEL +A  RSF  EE   F + A
Sbjct:   87 VVIRIDSPGGDALASDLLWREIRLLAAE-KPVIASLADVAASGGYYIAMAAGTIVAENLTLTGSIGVVKGKFSLGKLYEKIGFNKAIISKGKYAELTAAEQRSFRPEEAELFAKSA 201          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A7S1TAP7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TAP7_9RHOD)

HSP 1 Score: 129 bits (325), Expect = 1.670e-32
Identity = 65/119 (54.62%), Postives = 88/119 (73.95%), Query Frame = 1
Query:   10 IDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA-RSFTAEEDAYFGRGAM 363
            +  +++R+ SPGG A ASDLMW E+R +RE  K ++AS+ DVAASGGYYIAM C RIVC+  +ITGS+GVV+A L +GEL +++G+  E ISKG YAEL +  R+   +E  YF RGA+
Sbjct:  423 VKAIILRIDSPGGSALASDLMWGELRAVREK-KPIIASMVDVAASGGYYIAMACNRIVCERSTITGSVGVVTAKLSLGELYQRVGLQREDISKGAYAELDTEYRALNEDEGRYFERGAL 540          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A0R0JK38_SOYBN (Peptidase_S49 domain-containing protein (Fragment) n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0JK38_SOYBN)

HSP 1 Score: 124 bits (312), Expect = 2.690e-32
Identity = 64/120 (53.33%), Postives = 86/120 (71.67%), Query Frame = 1
Query:    7 QIDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA--RSFTAEEDAYFGRGA 360
            +    ++R+ SPGGDA ASDLMWRE+R L  S K V+AS++DVAASGGYY+AMG + IV + L++TGSIGVV+    +G+L EKIG   E++S+GKYAEL +A  R F  +E   F + A
Sbjct:   59 EFKAAIIRIDSPGGDALASDLMWREIRLLAAS-KPVIASMSDVAASGGYYMAMGADVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEILSRGKYAELLAAEQRPFRPDEAELFAKSA 177          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A5N6N5I8_9ASTR (Uncharacterized protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6N5I8_9ASTR)

HSP 1 Score: 128 bits (321), Expect = 6.430e-32
Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   19 VVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA-RSFTAEEDAYFGRGAMAV 369
            V++R+ SPGGD  ASDLMWRE++ L ES K VVAS+ DVAASGGYY+AM    IV + L++TGSIGV++A   +G+L EKIG   E+ISKG+YAEL++A RSF  +E+  F   A  +
Sbjct:  353 VIIRIDSPGGDVLASDLMWREIKLLAES-KPVVASMVDVAASGGYYMAMAAHTIVSENLTLTGSIGVITAKFNLGKLYEKIGFNKEIISKGQYAELYAADRSFRPDEEKLFAERAQNI 469          
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Match: A0A4P1RU08_LUPAN (Uncharacterized protein n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=A0A4P1RU08_LUPAN)

HSP 1 Score: 128 bits (321), Expect = 6.700e-32
Identity = 69/123 (56.10%), Postives = 88/123 (71.54%), Query Frame = 1
Query:    7 QIDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGGYYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYAELFSA--RSFTAEEDAYFGRGAMAV 369
            +I   ++R+ SPGGDA ASDLMWRE+R L  S K VVAS++DVAASGGYY+AMG   IV + L++TGSIGVV+    +G+L EKIG   E+IS+GKYAEL +A  RSF  +E   F + A  V
Sbjct:  552 KIKAAIIRIDSPGGDALASDLMWREIRLLAAS-KPVVASMSDVAASGGYYMAMGTGTIVAESLTLTGSIGVVTGKFNLGKLYEKIGFKKEIISRGKYAELLAAEQRSFRPDEAELFAKSAQHV 673          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7293.18447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBW2_ECTSI3.230e-67100.00Signal peptide peptidase n=2 Tax=Ectocarpus TaxID=... [more]
A0A5J4Z7N2_PORPP2.750e-3458.82Serine protease SPPA, chloroplastic n=1 Tax=Porphy... [more]
UPI00098DE2EA3.470e-3356.56serine protease SPPA, chloroplastic n=1 Tax=Aspara... [more]
A0A371ERT0_MUCPR5.110e-3355.65Serine protease SPPA, chloroplastic (Fragment) n=1... [more]
A0A7S0X169_9CHLO5.140e-3358.47Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A7C9AD89_OPUST7.610e-3358.62Peptidase_S49 domain-containing protein n=1 Tax=Op... [more]
A0A7S1TAP7_9RHOD1.670e-3254.62Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A0R0JK38_SOYBN2.690e-3253.33Peptidase_S49 domain-containing protein (Fragment)... [more]
A0A5N6N5I8_9ASTR6.430e-3255.93Uncharacterized protein n=2 Tax=Mikania micrantha ... [more]
A0A4P1RU08_LUPAN6.700e-3256.10Uncharacterized protein n=1 Tax=Lupinus angustifol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7293contigEcto-sp13_S_contig7293:5876..7056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score226.1
Seed ortholog evalue9e-57
Seed eggNOG ortholog2880.D8LBW2
Model size369
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.signal peptide processing
EggNOG OGs2QQH5@2759,COG0616@1
Cds size369
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.8847458-CDS-Ecto-sp13_S_contig7293:5875..59861681463996.8847458-CDS-Ecto-sp13_S_contig7293:5875..5986Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7293 5876..5986 -
1681463996.9021783-CDS-Ecto-sp13_S_contig7293:6447..66241681463996.9021783-CDS-Ecto-sp13_S_contig7293:6447..6624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7293 6448..6624 -
1681463996.9191458-CDS-Ecto-sp13_S_contig7293:6975..70561681463996.9191458-CDS-Ecto-sp13_S_contig7293:6975..7056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7293 6976..7056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7293.18447.1prot_Ecto-sp13_S_contig7293.18447.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7293 5876..7056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7293.18447.1

>prot_Ecto-sp13_S_contig7293.18447.1 ID=prot_Ecto-sp13_S_contig7293.18447.1|Name=mRNA_Ecto-sp13_S_contig7293.18447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
YPQIDGVVVRVSSPGGDASASDLMWREVRRLRESGKVVVASVADVAASGG
YYIAMGCERIVCDELSITGSIGVVSALLKIGELLEKIGITSELISKGKYA
ELFSARSFTAEEDAYFGRGAMAV
back to top

mRNA from alignment at Ecto-sp13_S_contig7293:5876..7056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7293.18447.1 ID=mRNA_Ecto-sp13_S_contig7293.18447.1|Name=mRNA_Ecto-sp13_S_contig7293.18447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1181bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7293:5876..7056- (Ectocarpus species13 EcNAP12_S_4_19m)
TATCCGCAGATCGATGGCGTGGTAGTTAGAGTCAGCTCCCCCGGGGGCGA CGCGTCGGCGTCAGACCTCATGTGGAGAGAGGTGAGAAATGGCCACCCGC GTGTATGGGGTAGTAGCTTACGTCTGATTGAGCAAGGCGTGAGGGCCGCT TGTCCGACGTACAGCCGTGGCGGCCTCTCTTGCTCCTCTCCTTTTGCGCT AGACGCGAAGTCTGGTTGTGGCAAGTCCCCCTCTCGCCGCCCCGCCCATT GATGTTTCGGTTTTCCCCCGGCGGACCCTCGGAATGAAATCCCGCCTGGA CTGTGGTCTAAAACTCTACAATCGCAAGAGACATGGAAGCGCCGAAATGC CGACCATGAATCACCTCAGCTGATGATGGCGCAGAGCAGTTGAGACCCCT GACCGATACCGGTTTCGTTTTTGACGAAAAAGGTGCGGCGGCTGCGTGAG TCCGGCAAGGTGGTTGTGGCCTCCGTTGCCGACGTTGCGGCGAGCGGTGG CTACTACATCGCCATGGGCTGCGAGCGGATCGTTTGCGACGAACTTAGCA TCACGGGCAGCATAGGGGTTGTGTCGGCCCTGCTCAAGATTGGGGAGCTC CTCGAGAAGGTGAATTCCCGAGGCGGGTTATATGCTTCTAGCTGTAGAAG TCAAGAACAGAAATTCTCGATGGTGCGGCGTAGTGCACGAGCTTCGTGCT GTTGTTCATTTGTGACGGGTTTCTCTTCGAGAACTCTAGACCTGGAGGAG TACGCGCGGTGGTGGGGAGTATTTCACGATTGGCACCGTGTTGATTTGTA ACGCACTCGGTAGGTACGTGTATGTCCGCCTTTTCGGTTCGGTCGACTGT GCGACGGAGGCTCCCGCTGCCTGCAGCACTTGTCGCAACCAGCATGGCGA CGACGACGATTTCGGTTGTCCTACGTAGTGCGACCGTATTTTTATCGATC GGCAATTCAGTTTCCTGCTGAACGAAAACACCAAGCCAGAGGAAGACAGA CTCGACCATGGCTGACTACGGCGGCTGTACCTTCCCGGTGTGTATGCCCC CCGTTCACTGCTGGGTTCAGATCGGCATCACGTCCGAGCTGATCAGCAAG GGCAAGTATGCGGAGCTTTTCTCGGCTAGGAGCTTCACCGCCGAAGAGGA CGCGTACTTCGGGAGGGGCGCCATGGCGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7293:5876..7056-

>mRNA_Ecto-sp13_S_contig7293.18447.1 ID=mRNA_Ecto-sp13_S_contig7293.18447.1|Name=mRNA_Ecto-sp13_S_contig7293.18447.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7293:5876..7056- (Ectocarpus species13 EcNAP12_S_4_19m)
TATCCGCAGATCGATGGCGTGGTAGTTAGAGTCAGCTCCCCCGGGGGCGA
CGCGTCGGCGTCAGACCTCATGTGGAGAGAGGTGCGGCGGCTGCGTGAGT
CCGGCAAGGTGGTTGTGGCCTCCGTTGCCGACGTTGCGGCGAGCGGTGGC
TACTACATCGCCATGGGCTGCGAGCGGATCGTTTGCGACGAACTTAGCAT
CACGGGCAGCATAGGGGTTGTGTCGGCCCTGCTCAAGATTGGGGAGCTCC
TCGAGAAGATCGGCATCACGTCCGAGCTGATCAGCAAGGGCAAGTATGCG
GAGCTTTTCTCGGCTAGGAGCTTCACCGCCGAAGAGGACGCGTACTTCGG
GAGGGGCGCCATGGCGGTG
back to top