mRNA_Ecto-sp13_S_contig72911.18444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE) HSP 1 Score: 117 bits (293), Expect = 6.480e-31 Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 1
Query: 7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
+RQNPNPTPNDGFSEGASI+ GEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTE+
Sbjct: 116 ERQNPNPTPNDGFSEGASILAGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEI 174
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A7S2XYK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK8_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 4.950e-17 Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 1
Query: 16 NPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
NPNP P DG +G S + GEW+L+FT+ALDVLS+G++P V +GQ++QN+N DG+E+
Sbjct: 35 NPNPNPCDGLLDGTSPLEGEWQLLFTNALDVLSVGIVPAVYVGQVYQNVNYDGSEI 90
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A6V1M850_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M850_HETAK) HSP 1 Score: 73.6 bits (179), Expect = 1.730e-14 Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
Q NPNP P G G S ++G+W+L++T+ALDVL++ L+P V +GQ++QNIN D +E+
Sbjct: 53 QADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEI 111
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A6S9HUA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUA9_HETAK) HSP 1 Score: 72.4 bits (176), Expect = 1.140e-13 Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
+ NPNP P G G S ++G+W+L++T+ALDVL++ L+P V +GQ++QNIN D +E+
Sbjct: 125 EADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEI 183
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A0G4GXJ9_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GXJ9_VITBC) HSP 1 Score: 71.6 bits (174), Expect = 2.650e-13 Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 16 NPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDG 174
NPNP PN +G+S + GEW+L+FT+ALDVL LGLIP V++GQ++QN+N DG
Sbjct: 145 NPNPQPNL-MKDGSSPLNGEWRLLFTNALDVLLLGLIPAVQVGQVYQNVNLDG 196
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A4D9CVH1_9STRA (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVH1_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.890e-12 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 16 NPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
NP P P + FS+G S ++G W+L++T ALDVL LGL+P IG++FQNI+ DG +
Sbjct: 139 NPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSI 194
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A0G4GR69_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GR69_9ALVE) HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8 Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1
Query: 7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNI 162
+++NPNP P S + GEW+L++T+A+DVL LG IP V++G+IFQN+
Sbjct: 116 EKRNPNPEPLKASELSRSPLFGEWRLLYTNAIDVLLLGAIPVVQVGRIFQNV 167
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A7S0G6A7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G6A7_9RHOD) HSP 1 Score: 57.8 bits (138), Expect = 3.040e-8 Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNI 162
+ +NP P PN+ + G+WKLI+T+ALD+L+LG+IP V++GQ++QNI
Sbjct: 217 ESKNPTPVPNESEK-----LEGDWKLIYTNALDILALGVIPLVQLGQVYQNI 263
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: UPI001FF0EE99 (PAP/fibrillin family protein n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF0EE99) HSP 1 Score: 53.1 bits (126), Expect = 6.750e-7 Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 22 NPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
NPTPN ++ +++G W+L++T+++DV+ LG +PGV +GQI+Q I D V
Sbjct: 39 NPTPNP--AQAPELLSGCWQLLYTTSVDVIGLGRVPGVTLGQIYQVIQADKNRV 90
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: R7Q658_CHOCR (PAP_fibrillin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q658_CHOCR) HSP 1 Score: 50.4 bits (119), Expect = 1.120e-5 Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 1
Query: 46 SEGASIITGEWKLIFTSALDVLSLGLI-PGVEIGQIFQNINE 168
++ ++ G W+L+FT+ALDVLSLGL+ P ++GQIFQNI E
Sbjct: 130 ADDPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYE 171 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig72911.18444.1 >prot_Ecto-sp13_S_contig72911.18444.1 ID=prot_Ecto-sp13_S_contig72911.18444.1|Name=mRNA_Ecto-sp13_S_contig72911.18444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp QNQRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIback to top mRNA from alignment at Ecto-sp13_S_contig72911:9..191- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig72911.18444.1 ID=mRNA_Ecto-sp13_S_contig72911.18444.1|Name=mRNA_Ecto-sp13_S_contig72911.18444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72911:9..191- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72911:9..191- >mRNA_Ecto-sp13_S_contig72911.18444.1 ID=mRNA_Ecto-sp13_S_contig72911.18444.1|Name=mRNA_Ecto-sp13_S_contig72911.18444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72911:9..191- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |