mRNA_Ecto-sp13_S_contig72911.18444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72911.18444.1
Unique NamemRNA_Ecto-sp13_S_contig72911.18444.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A6H5KJ99_9PHAE (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJ99_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 6.480e-31
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 1
Query:    7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
            +RQNPNPTPNDGFSEGASI+ GEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTE+
Sbjct:  116 ERQNPNPTPNDGFSEGASILAGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEI 174          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A7S2XYK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.950e-17
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   16 NPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
            NPNP P DG  +G S + GEW+L+FT+ALDVLS+G++P V +GQ++QN+N DG+E+
Sbjct:   35 NPNPNPCDGLLDGTSPLEGEWQLLFTNALDVLSVGIVPAVYVGQVYQNVNYDGSEI 90          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A6V1M850_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M850_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 1.730e-14
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
            Q  NPNP P  G   G S ++G+W+L++T+ALDVL++ L+P V +GQ++QNIN D +E+
Sbjct:   53 QADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEI 111          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A6S9HUA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HUA9_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 1.140e-13
Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
            +  NPNP P  G   G S ++G+W+L++T+ALDVL++ L+P V +GQ++QNIN D +E+
Sbjct:  125 EADNPNPMPTQGLEFGTSPLSGDWRLVYTNALDVLTVALVPAVAVGQVYQNINGDASEI 183          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A0G4GXJ9_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GXJ9_VITBC)

HSP 1 Score: 71.6 bits (174), Expect = 2.650e-13
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   16 NPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDG 174
            NPNP PN    +G+S + GEW+L+FT+ALDVL LGLIP V++GQ++QN+N DG
Sbjct:  145 NPNPQPNL-MKDGSSPLNGEWRLLFTNALDVLLLGLIPAVQVGQVYQNVNLDG 196          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A4D9CVH1_9STRA (PAP_fibrillin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVH1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.890e-12
Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   16 NPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
            NP P P + FS+G S ++G W+L++T ALDVL LGL+P   IG++FQNI+ DG  +
Sbjct:  139 NPTPRPTEAFSQGTSPLSGTWRLVYTDALDVLVLGLVPLAVIGKVFQNISPDGKSI 194          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A0G4GR69_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GR69_9ALVE)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8
Identity = 25/52 (48.08%), Postives = 38/52 (73.08%), Query Frame = 1
Query:    7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNI 162
            +++NPNP P        S + GEW+L++T+A+DVL LG IP V++G+IFQN+
Sbjct:  116 EKRNPNPEPLKASELSRSPLFGEWRLLYTNAIDVLLLGAIPVVQVGRIFQNV 167          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: A0A7S0G6A7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G6A7_9RHOD)

HSP 1 Score: 57.8 bits (138), Expect = 3.040e-8
Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    7 QRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNI 162
            + +NP P PN+        + G+WKLI+T+ALD+L+LG+IP V++GQ++QNI
Sbjct:  217 ESKNPTPVPNESEK-----LEGDWKLIYTNALDILALGVIPLVQLGQVYQNI 263          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: UPI001FF0EE99 (PAP/fibrillin family protein n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF0EE99)

HSP 1 Score: 53.1 bits (126), Expect = 6.750e-7
Identity = 23/54 (42.59%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   22 NPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQIFQNINEDGTEV 183
            NPTPN   ++   +++G W+L++T+++DV+ LG +PGV +GQI+Q I  D   V
Sbjct:   39 NPTPNP--AQAPELLSGCWQLLYTTSVDVIGLGRVPGVTLGQIYQVIQADKNRV 90          
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Match: R7Q658_CHOCR (PAP_fibrillin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q658_CHOCR)

HSP 1 Score: 50.4 bits (119), Expect = 1.120e-5
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   46 SEGASIITGEWKLIFTSALDVLSLGLI-PGVEIGQIFQNINE 168
            ++   ++ G W+L+FT+ALDVLSLGL+ P  ++GQIFQNI E
Sbjct:  130 ADDPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYE 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72911.18444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KJ99_9PHAE6.480e-3193.22PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A7S2XYK8_9STRA4.950e-1757.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1M850_HETAK1.730e-1449.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9HUA9_HETAK1.140e-1347.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GXJ9_VITBC2.650e-1360.38PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
A0A4D9CVH1_9STRA1.890e-1251.79PAP_fibrillin domain-containing protein n=3 Tax=Mo... [more]
A0A0G4GR69_9ALVE1.630e-848.08Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A7S0G6A7_9RHOD3.040e-848.08Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI001FF0EE996.750e-742.59PAP/fibrillin family protein n=1 Tax=Synechococcus... [more]
R7Q658_CHOCR1.120e-554.76PAP_fibrillin domain-containing protein n=1 Tax=Ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72911contigEcto-sp13_S_contig72911:9..191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.2
Seed ortholog evalue3.4e-25
Seed eggNOG ortholog2880.D7FJD3
Model size183
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to acid chemical
EggNOG OGs28JPH@1,2QS2T@2759
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.7400947-CDS-Ecto-sp13_S_contig72911:8..1911681463996.7400947-CDS-Ecto-sp13_S_contig72911:8..191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72911 9..191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72911.18444.1prot_Ecto-sp13_S_contig72911.18444.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72911 9..191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72911.18444.1

>prot_Ecto-sp13_S_contig72911.18444.1 ID=prot_Ecto-sp13_S_contig72911.18444.1|Name=mRNA_Ecto-sp13_S_contig72911.18444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
QNQRQNPNPTPNDGFSEGASIITGEWKLIFTSALDVLSLGLIPGVEIGQI
FQNINEDGTEV
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mRNA from alignment at Ecto-sp13_S_contig72911:9..191-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72911.18444.1 ID=mRNA_Ecto-sp13_S_contig72911.18444.1|Name=mRNA_Ecto-sp13_S_contig72911.18444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72911:9..191- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAACCAGAGGCAAAACCCGAATCCGACGCCAAACGACGGATTCTCGGA GGGCGCCTCTATCATTACGGGCGAGTGGAAGCTCATTTTCACTTCCGCGT TGGACGTGCTGTCGCTGGGACTAATCCCAGGCGTGGAAATCGGACAGATA TTTCAGAACATCAACGAGGATGGGACCGAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72911:9..191-

>mRNA_Ecto-sp13_S_contig72911.18444.1 ID=mRNA_Ecto-sp13_S_contig72911.18444.1|Name=mRNA_Ecto-sp13_S_contig72911.18444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72911:9..191- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAAACCAGAGGCAAAACCCGAATCCGACGCCAAACGACGGATTCTCGGA
GGGCGCCTCTATCATTACGGGCGAGTGGAAGCTCATTTTCACTTCCGCGT
TGGACGTGCTGTCGCTGGGACTAATCCCAGGCGTGGAAATCGGACAGATA
TTTCAGAACATCAACGAGGATGGGACCGAGGTA
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