mRNA_Ecto-sp13_S_contig7275.18424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7275.18424.1
Unique NamemRNA_Ecto-sp13_S_contig7275.18424.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7275.18424.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.580e-46
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 1 
Query:   58 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHDGAPRMGAGGAGGGTDWGHILSRRRS 306
            VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHDGAPRMGAGGAGG  DWGH+LSRRRS
Sbjct: 1071 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHDGAPRMGAGGAGGRADWGHVLSRRRS 1153
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BLAST of mRNA_Ecto-sp13_S_contig7275.18424.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 1.200e-44
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:   58 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHDGAPRMGAGGAGGGTDWGHILSR 297
            VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLH GAPRMGAGGAGGG DWGHIL R
Sbjct:  741 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHHGAPRMGAGGAGGGADWGHILPR 820
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BLAST of mRNA_Ecto-sp13_S_contig7275.18424.1 vs. uniprot
Match: A0A835YHQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.500e-7
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   61 SEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTL 195
            SEV F+THL+FS  LP  ++ +A R+ +GPLHILQEL+ VV+RTL
Sbjct:  455 SEVYFYTHLSFSENLPALEDAQASRYLLGPLHILQELRRVVDRTL 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7275.18424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K079_9PHAE1.580e-4696.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSJ0_ECTSI1.200e-4496.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YHQ7_9STRA1.500e-760.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7275contigEcto-sp13_S_contig7275:3483..4685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score162.9
Seed ortholog evalue8.3e-38
Seed eggNOG ortholog2880.D7FSJ0
Model size334
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
Cds size330
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.3891313-CDS-Ecto-sp13_S_contig7275:3484..35121681463995.3891313-CDS-Ecto-sp13_S_contig7275:3484..3512Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7275 3485..3512 -
1681463995.400363-CDS-Ecto-sp13_S_contig7275:3998..41351681463995.400363-CDS-Ecto-sp13_S_contig7275:3998..4135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7275 3999..4135 -
1681463995.4096754-CDS-Ecto-sp13_S_contig7275:4520..46851681463995.4096754-CDS-Ecto-sp13_S_contig7275:4520..4685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7275 4521..4685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7275.18424.1prot_Ecto-sp13_S_contig7275.18424.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7275 3485..4685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7275.18424.1

>prot_Ecto-sp13_S_contig7275.18424.1 ID=prot_Ecto-sp13_S_contig7275.18424.1|Name=mRNA_Ecto-sp13_S_contig7275.18424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
GRRRRALAKGGDEGGGGGGVSEVTFFTHLTFSAYLPDFQEMEACRHFVGP
LHILQELKWVVERTLGSFQEDDEVLHDGAPRMGAGGAGGGTDWGHILSRR
RSSRSERRSS
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mRNA from alignment at Ecto-sp13_S_contig7275:3483..4685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7275.18424.1 ID=mRNA_Ecto-sp13_S_contig7275.18424.1|Name=mRNA_Ecto-sp13_S_contig7275.18424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7275:3483..4685- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGAGGAGGCGTGCCCTGGCGAAGGGCGGGGATGAAGGGGGGGGTGG
TGGTGGCGTGAGCGAGGTCACGTTCTTCACGCACCTAACGTTCAGCGCGT
ACCTGCCGGATTTCCAGGAGATGGAGGCGTGCCGGCACTTCGTCGGGCCG
TTGCACATCCTGCAGGTTTGTTGGCGCGTTTGCATCACGAGCGCCTGCCT
GCCTGCCTGCCTGCCTGCCTCATCACACGGAAGAAAACAAGTCGCGCAAC
AACACCAAAAGAAGAGTTGACAAGAATTCTACATCACCGAAAGGACACAA
GACATCAATCGGTGGCTCGTGATTACCCGGGGCAACCGCAGTCAGTATGC
AGCGCTGGTACCCAGACCTCTTCCAGCTCGACCAACAGTCGCCAGGCCAA
CACCCAAAAATGTAGCAGGTTGAACTAACATTTTTGAAGAGCAACATCAA
CAAATTAGCAGGCGCCGCAACAGGATGCAGTCTAACGAACTGCCTGTTTA
TAGTCTAACGCCGTAACTCAACACGCTAAACGAACGAATGACTCTAATAG
GAGCTCAAGTGGGTCGTGGAGCGCACCCTTGGGTCGTTCCAGGAGGACGA
CGAGGTGCTGCACGACGGGGCCCCCAGGATGGGAGCGGGGGGCGCGGGAG
GGGGGACGGACTGGGGGCACATCTTGTCTCGAAGGAGGTAGAGTACCATT
CGCACGTGTGTGTTGTTTTCATCACATTTCTGCGGTCCGCAACAAATCCA
CGAGTCTTTTTATCCACGTTGGCACCTTTTCTAGCTTTCAAACAAAAAAT
AATGCCGTTCCCCAAAACCCAAGAAAGTACGATAATGGTACGTGCATCAT
TTTTTGAAATAAACATGGAAACACATCTTGTAGCCTACATATCCTCATGG
CAGTGACTGAGGGATTGTACATGTTCATGTTTACCTTGAGAACAACGCCG
GCCTGACTCAGACGCTCTAGTTTGCGCAAAATATTTTGCTCCGAAGTGTG
GTGGATATTTGTCGACATGCCATGCAACCAACATGGGTTCTTATAAGGGG
TCCACGCCGATCTACCACGCGTACCCCCCCCCCCACAGGTACCTGCCTTG
TTCGTTCCCCCGATGCCTCGTCGATACCCTCACCTCAAACCGTTTCAAAT
ATTTTTTTCTTGGTCTTCCGCAGGTCTTCGAGGTCCGAGAGACGGTCGTC
CGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7275:3483..4685-

>mRNA_Ecto-sp13_S_contig7275.18424.1 ID=mRNA_Ecto-sp13_S_contig7275.18424.1|Name=mRNA_Ecto-sp13_S_contig7275.18424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7275:3483..4685- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGGAGGAGGCGTGCCCTGGCGAAGGGCGGGGATGAAGGGGGGGGTGG
TGGTGGCGTGAGCGAGGTCACGTTCTTCACGCACCTAACGTTCAGCGCGT
ACCTGCCGGATTTCCAGGAGATGGAGGCGTGCCGGCACTTCGTCGGGCCG
TTGCACATCCTGCAGGAGCTCAAGTGGGTCGTGGAGCGCACCCTTGGGTC
GTTCCAGGAGGACGACGAGGTGCTGCACGACGGGGCCCCCAGGATGGGAG
CGGGGGGCGCGGGAGGGGGGACGGACTGGGGGCACATCTTGTCTCGAAGG
AGGTCTTCGAGGTCCGAGAGACGGTCGTCC
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