prot_Ecto-sp13_S_contig72679.18412.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72679.18412.1
Unique Nameprot_Ecto-sp13_S_contig72679.18412.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length63
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72679.18412.1 vs. uniprot
Match: D8LC23_ECTSI (Glyco_transf_41 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC23_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.710e-21
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 
Query:   12 APKLKDRGEIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAYK 63
            A +  DRGEIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAYK
Sbjct:   31 AVEFHDRGEIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAYK 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72679.18412.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC23_ECTSI1.710e-2192.31Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13414TPR_11coord: 16..52
e-value: 1.7E-8
score: 34.0
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 15..63
e-value: 3.4E-10
score: 41.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 15..62
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 1..63
score: 11.888

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72679contigEcto-sp13_S_contig72679:6..194 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72679.18412.1mRNA_Ecto-sp13_S_contig72679.18412.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72679 6..194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72679.18412.1 ID=prot_Ecto-sp13_S_contig72679.18412.1|Name=mRNA_Ecto-sp13_S_contig72679.18412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
IPRPVCLIFSPAPKLKDRGEIDAAISQYRVAINMTNDLASAWLNLGLALA
MLDREDEAIDAYK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom