mRNA_Ecto-sp13_S_contig72679.18412.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72679.18412.1
Unique NamemRNA_Ecto-sp13_S_contig72679.18412.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72679.18412.1 vs. uniprot
Match: D8LC23_ECTSI (Glyco_transf_41 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC23_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.710e-21
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 1 
Query:   34 APKLKDRGEIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAYK 189
            A +  DRGEIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAYK
Sbjct:   31 AVEFHDRGEIDAAISQYRVAINMTNDLASAWLNLGLALAMLDREDEAIDAYK 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72679.18412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC23_ECTSI1.710e-2192.31Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72679contigEcto-sp13_S_contig72679:6..194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score95.9
Seed ortholog evalue7.2e-18
Seed eggNOG ortholog2880.D8LC23
Model size189
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein N-acetylglucosaminyltransferase activity
EggNOG OGsCOG3914@1,KOG4626@2759
Cds size189
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.6726508-CDS-Ecto-sp13_S_contig72679:5..1941681463994.6726508-CDS-Ecto-sp13_S_contig72679:5..194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72679 6..194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72679.18412.1prot_Ecto-sp13_S_contig72679.18412.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72679 6..194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72679.18412.1

>prot_Ecto-sp13_S_contig72679.18412.1 ID=prot_Ecto-sp13_S_contig72679.18412.1|Name=mRNA_Ecto-sp13_S_contig72679.18412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
IPRPVCLIFSPAPKLKDRGEIDAAISQYRVAINMTNDLASAWLNLGLALA
MLDREDEAIDAYK
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mRNA from alignment at Ecto-sp13_S_contig72679:6..194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72679.18412.1 ID=mRNA_Ecto-sp13_S_contig72679.18412.1|Name=mRNA_Ecto-sp13_S_contig72679.18412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72679:6..194- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCCACGACCTGTTTGTCTGATATTCTCTCCGGCACCAAAACTAAAGGA
TCGTGGAGAAATTGACGCTGCGATCTCCCAATATCGTGTGGCAATAAACA
TGACGAACGACCTGGCATCCGCGTGGTTGAACTTGGGGCTGGCCCTCGCC
ATGCTCGACCGTGAGGATGAAGCTATTGACGCCTACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72679:6..194-

>mRNA_Ecto-sp13_S_contig72679.18412.1 ID=mRNA_Ecto-sp13_S_contig72679.18412.1|Name=mRNA_Ecto-sp13_S_contig72679.18412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72679:6..194- (Ectocarpus species13 EcNAP12_S_4_19m)
ATTCCACGACCTGTTTGTCTGATATTCTCTCCGGCACCAAAACTAAAGGA
TCGTGGAGAAATTGACGCTGCGATCTCCCAATATCGTGTGGCAATAAACA
TGACGAACGACCTGGCATCCGCGTGGTTGAACTTGGGGCTGGCCCTCGCC
ATGCTCGACCGTGAGGATGAAGCTATTGACGCCTACAAG
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