prot_Ecto-sp13_S_contig12190.1840.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12190.1840.1
Unique Nameprot_Ecto-sp13_S_contig12190.1840.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length109
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12190.1840.1 vs. uniprot
Match: D7FXX5_ECTSI (RING Zn finger-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX5_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 1.390e-70
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0 
Query:    1 DAVANETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 108
            DAVA ETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ
Sbjct:   54 DAVAKETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 161
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BLAST of mRNA_Ecto-sp13_S_contig12190.1840.1 vs. uniprot
Match: A0A672MM86_SINGR (Ring finger protein 34 n=35 Tax=Cypriniformes TaxID=7952 RepID=A0A672MM86_SINGR)

HSP 1 Score: 54.7 bits (130), Expect = 2.170e-6
Identity = 22/50 (44.00%), Postives = 30/50 (60.00%), Query Frame = 0 
Query:   58 SDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVEL 107
            +D   C+IC D   + V L+CGH   CT+CG CM+ CPIC Q +   V +
Sbjct:  312 NDDNLCRICMDAIIDCVLLECGHMVTCTKCGKCMSECPICRQYVIRAVHV 361
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BLAST of mRNA_Ecto-sp13_S_contig12190.1840.1 vs. uniprot
Match: UPI0018CCFB6B (E3 ubiquitin-protein ligase MYLIP-A n=1 Tax=Teleopsis dalmanni TaxID=139649 RepID=UPI0018CCFB6B)

HSP 1 Score: 53.1 bits (126), Expect = 8.220e-6
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = 0 
Query:   58 SDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVEL 107
            S++ TCKIC DRA NT+   C H   CT+C A  T CP C   ITD+V++
Sbjct:  571 SEAMTCKICMDRAINTMFNPCCHVMACTQCAARCTNCPNCRVKITDVVKI 620
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12190.1840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXX5_ECTSI1.390e-7099.07RING Zn finger-containing protein n=2 Tax=Ectocarp... [more]
A0A672MM86_SINGR2.170e-644.00Ring finger protein 34 n=35 Tax=Cypriniformes TaxI... [more]
UPI0018CCFB6B8.220e-650.00E3 ubiquitin-protein ligase MYLIP-A n=1 Tax=Teleop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 26..56
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 60..103
e-value: 6.9E-9
score: 35.4
NoneNo IPR availablePANTHERPTHR14879CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGcoord: 37..106
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 62..104
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 35..107
e-value: 9.0E-14
score: 52.6
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 84..95
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 63..97
score: 9.908

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12190contigEcto-sp13_S_contig12190:1246..4901 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12190.1840.1mRNA_Ecto-sp13_S_contig12190.1840.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12190 555..4901 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12190.1840.1 ID=prot_Ecto-sp13_S_contig12190.1840.1|Name=mRNA_Ecto-sp13_S_contig12190.1840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
DAVANETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRA
DKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQD
ITDLVELQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR0179004Fe4S_Fe_S_CS
IPR001841Znf_RING