mRNA_Ecto-sp13_S_contig12190.1840.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12190.1840.1
Unique NamemRNA_Ecto-sp13_S_contig12190.1840.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12190.1840.1 vs. uniprot
Match: D7FXX5_ECTSI (RING Zn finger-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXX5_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 8.710e-67
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 1 
Query:    1 DAVANETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 324
            DAVA ETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ
Sbjct:   54 DAVAKETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRADKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQDITDLVELQ 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12190.1840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXX5_ECTSI8.710e-6799.07RING Zn finger-containing protein n=2 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12190contigEcto-sp13_S_contig12190:555..4901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score217.6
Seed ortholog evalue2.8e-54
Seed eggNOG ortholog2880.D7FXX5
Model size1019
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Plus-3 domain
EggNOG OGs2A73H@1,2RYD8@2759
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-16_005200.1
Cds size327
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12190.1840.1prot_Ecto-sp13_S_contig12190.1840.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12190 1246..4901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.3450127-UTR-Ecto-sp13_S_contig12190:554..12451681462647.3450127-UTR-Ecto-sp13_S_contig12190:554..1245Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12190 555..1245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462647.3546479-CDS-Ecto-sp13_S_contig12190:1245..12751681462647.3546479-CDS-Ecto-sp13_S_contig12190:1245..1275Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12190 1246..1275 -
1681462647.362766-CDS-Ecto-sp13_S_contig12190:2457..25481681462647.362766-CDS-Ecto-sp13_S_contig12190:2457..2548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12190 2458..2548 -
1681462647.373599-CDS-Ecto-sp13_S_contig12190:3201..32721681462647.373599-CDS-Ecto-sp13_S_contig12190:3201..3272Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12190 3202..3272 -
1681462647.3827045-CDS-Ecto-sp13_S_contig12190:3824..38811681462647.3827045-CDS-Ecto-sp13_S_contig12190:3824..3881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12190 3825..3881 -
1681462647.39271-CDS-Ecto-sp13_S_contig12190:4823..49011681462647.39271-CDS-Ecto-sp13_S_contig12190:4823..4901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12190 4824..4901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12190.1840.1

>prot_Ecto-sp13_S_contig12190.1840.1 ID=prot_Ecto-sp13_S_contig12190.1840.1|Name=mRNA_Ecto-sp13_S_contig12190.1840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
DAVANETEYLSEPARRWTKLRQNFRLAALRSIAQDKREALKKLQEVRKRA
DKAQEAQSDSRTCKICWDRATNTVCLDCGHQCMCTRCGACMTFCPICMQD
ITDLVELQ*
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mRNA from alignment at Ecto-sp13_S_contig12190:555..4901-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12190.1840.1 ID=mRNA_Ecto-sp13_S_contig12190.1840.1|Name=mRNA_Ecto-sp13_S_contig12190.1840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12190:555..4901- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCCGTTGCCAACGAAACGGAGTACCTAAGCGAGCCGGCCCGGAGATG
GACTAAGCTAAGACAAAACTTCCGCCTTGTGAGTATCCAAGAATCGCGTG
CGGCTAGCGCCCGCGCTTGAGAATCTCCAGTTTAGGGGTTGGTTCATTGT
TCCTAGGTGATGCTACGAATGGCTTCTATATAGGTTTTAGTGAAGCGGTT
GTCAACTGAGCTCACGAATGATGCTGAAGTTCTTAGATCTTGAGTTTTTC
GAGGCTCTATCAGCTTCGAAACTGACGAGATTTTGAGTTTGTAGGCAACA
ACAGCTTCTTAACGGCCAAGTTTTTGAGTGCGAGCGCTAACTATTGTACA
GTTATGCGAATGACGCGTGTACGTATGATACATGGCCGATGATGTGTGAA
TGTATAATACACGGCCGGCATTGCGTGGCAGCATTCACTCACACATGCAA
CGTGTACCCTGCTTCACTAGATGTATTGATTGGCATCGCGCACCTCGACA
ATATTCCGCGGCAATCCCGGCGACTCCCGGATCTTACCTCCGAAGTCTTG
AGCTTCGTCATTGTAGTTGAAGCGGATCAATAGGAGCGTTGGGCTCTCCT
TTTCTTCTTTTTGCTTCGACGGGGCCCTCCTGTTTTCTGTTCTGTTCTCA
TCTTTCCCCCCGAATTCGTTCTCTCTTCCACCGGTGGTTTGTTTTTTTAT
GACGATGCGCTTTTCTGAGGATTTTCTGGGTCTGTGGTGCATCACACGGC
CGGCATTGCGTGGCAGAATTCACTCACACATGCAACGTGTACCCTGCTTC
ACTAGATGAGTCGTTTGGTAGGTACAGTGAGCGTTCTCGGGCGTTGTTTG
GAAACATCTACCAACATGCTGGCCTGTTGCCCGCCCATTTCTCCGCGCGA
GCTTGATCAAGTCGGTGGGAGTGTGACCATGAAAACGTTGCTTACATCTT
GCTGTCTCACCAGCCCTCCCACTCGAGTTGATACTGCCTTCACCCTGATC
TCTCCCTCCTGCCCCCTCAGGCGGCGCTACGATCCATCGCCCAAGATAAG
CGGGAAGCTCTCAAGAAACTTCAAGAGGTGTGTTCGCAGTTTGGTGATCC
CGGTTCCTTCGGCACTTCGTCCACGCGCAAAGAAATTCCCACAAGTTGAA
AACCCGGGAGATAATGTGGCTAGAACACCGATAGGTTTAAGAACTCGTCT
AGAAGAACGGTGGTCAGCTAATAGTCCCTCACTACAACAATGTTGGTTTA
CCCCATGGAGTAAGAAACGACTTGGTTTTCTACGTGGTACGTAGTATGTT
CTGGAGGGCCCAAGAGACAACACGGAGACATTGCTCCTTGGCGCAGGAGC
GTTTGGTCCCTCTCTTCAAGACGGTGGAAGCAATGCACTGGGGTAGATCA
GGTTGAAGCACAGAAACGTGGGAACGATCTCCAGGCAAGACTTGACAAAT
CACCTTCTACATTAGTGCAAGTGTGAAACAGCGGTGAACAAGTGTCGATG
AGACCCGAAACGAAAGAGGCATGCTACCTACTTACACCGTTTATCTTCAG
AGTGTTGAAATATGACTATTTACAGAGGACGCCTGTCGTGTTCCCCCTCC
GTCGATGGTGTGTTTTCTCGTCACCCAAGGTTAGGAAGAGAGCAGACAAG
GCCCAGGAGGCCCAGAGTGACAGCCGAACTTGCAAGATCTGCTGGGACAG
GTGAAGACTCTAGGCCTTAAGTAGCTCTGCGGCTGTTTGTTTTTTTTGCT
TGGACCGCTGAGCTCCATTGCCTCGAGATCACAACATCGAGTCGCTGCTG
ATATTTTCCCGCGAACGGATACGAAACAGTTGGTTGTCACTGGCGGGTTT
TCTAGAGAGGCCCTTTTTCTTTTTGACACCTTGACTCGAAAGGTTGCTGT
GGTAGGCATGCATGCGCATGTTGTGTTGTTGTTGCGATGGGTAGTTGGCA
CATGAACACGGAAGGTGCCCGCATCAGTTGGACCGGTCCTGGTAAAAGAA
GGTACTAAGCAGAGACAGGCCGTAACGGTGTTCGACGCGAAGACAACAAT
AACAACAACAACAATCTAGCTCCTGTACTGGTGTGCTGTGCCCGGGTTGG
TTCAATCGTTTCGATAGCCGTGGAGTGATATCAACCTACTTCGTGATGAG
TCTTTGTTGGTAGTTGTCGTGGGTAACCATGTGTGGGTGGGCGTTGTCAG
TCCTATGGCACACGTGGTAGTTAGCGTGCGTCGCACTGCCCACTCCGTGT
GATCGACAGGAACTCGGACTGCAGTTGCTGTTGCAATTATTCTGCCGAGT
ATCATGGGCGTTTATGTATCACGTCCGCTGCTTGGCCGTCGCAACGCCCG
CAGGGCGACGAATACCGTGTGCTTGGACTGCGGACACCAGTGCATGTGCA
CAAGGTGTGGGGCGTGCATGACATTCTGCCCCATTTGCATGCAGGTATGC
ACACGCTGTACGTTCTTTCGGGTAGTACTTGTACAACGTGCATATGGAAG
CATGATTGGCGCACGCTTGTCGGAGTGTCGGCACGGGTGACCTGGGTGCT
ACATCTCTGCGTAGCATCAAGCAATACACTGCGTGGGGGGAATACCGTAG
ACGACAAAAGATAACACCCACGTAAGAAACCACCCCCCCCCCACAGAAAA
CGACACCCCGGTGATAATATTCAGCGTTTCTCACAAACCGTCGATTTATC
ACCGGGGCTTCATAAGACAACACACCGCTTGAGGCTACGCCGCAGGCTCC
TCCTTCTATCACCGGGGTGATACAACATCTGCCGCGTGGGCATGTGGGTA
TCTCACACACACAACATCTGCGTAACTCTCTTTTGGTCAAACCCAATAGC
AAGGTATGCAGGAGCCTACTTTTCGTGTGAGGCGGCATGATGGATGGCGC
ACTCTAGCCACCGAGTCGTGTGCTCAGGAGTTTCTTCACCTCCGATGAGC
TCCTTTGTTTTACCACAATCCGCAGAACCACAAGTCATGAAGTGTTCGTA
CAGGCATTGCTATCACTCCCCCGCAATACCAACCAAGTGTGCGGCAGCAA
CGGTTCAACTCTACAAGACGTGTTATATCACCTTTTTATCACACCCCCTC
ATTGTCACGCCCCAAACACACCCTGTGGGTGTTCGGACGTGCTAGCACAC
CTCCTTACCCCCTCATTCATCACACCCCAAACACACCCTGTGCATGTTCG
GACGTTTTATCACACCCCCCTGGTTTATCATACCCTCTTGAGAGCCCAAG
CGAGCTGCACTTCGTCACCCGGACTGCGTAAGATACCACACCCCCCACAG
GATACCACACCCGGTGGTAATATTTTTAAAGCCCAAAATTTTATTACCGG
GGTGTGTTATCTTGTGACGTCTACGATACATGTGCCGTCTGATTTTTTTG
TCTTGATCGTTTACGTTTTAGGGACGTTTTCTTTGCAGATGGCAATACCC
AACTAGGGTGCAACCAGCATGTGTTTGCGTGTGTATGTACGCCGACATGT
TGTGTTAGATGGAAATTCCAATTTTGAAGTATCAAGCACCAAGGCCTCAT
GCAAAATCACTTCGCAATTTTTGAGTGACGGCCTCGACTTTCGGTGTTCG
CCATCTAACACGCAACAACACAACAGGATATTACCGACCTGGTGGAGTTG
CAATAGCAGCAAACGCCGCCTTGTCCTCGTTCCCGCATGGTCCTCTGGCG
AGTGGGGCTGGGCCAAGCTCGGAATGGCGTGCTGCAAAGCGTTGCGTCTA
CTCATTTTTATTGGTGACTGGCAGTTTCCTGAAGTTCGGAAGACAACGGC
GGTGTTGCCAAGGTTTATGCTGATTGTTTTTGAAATGTTATTTTGCAGGG
GCACATTGCGTAGCCGAGAGATCGGAAGATCAGTCTCTGTCGCGTAACCG
TTGCCTTCACAAGGACCACCGGTTGACCAGTTTGTACAGGGCACAGTAAC
CTGGAGTAGATGCAAGAGCGGCAAATGTCTTCCCTTCGTAGTCCCCATGA
GTGCCGGAAGAGGTGAGGGGTGTTGAAAATGTTGGTTCAGTTTCTGGCTA
TTTTCGGGTTTGTGTTGTATTTCCAACGATATTGTGAGTGGGCGTATTGT
CCATTTAACGGTTGTGTATGTCACACTTTATGCAGAACGAGTCCTCAGCC
CAGGGTTTGATTTTTTGGATTGAAAAAGCAGAGTGCTTGATTGATACCGG
TATCATTTTTTTGTTTTTATTCAAGTAGGCGGATAGTCTGTCGGCAGTAT
ACCCTAGAGTAGAGGCCGGCGGCAACATATTGCGTCCCTCAGGCCACGCT
CTGATGTCCACTGTTTGATCTCCAACCCCTGTCAGACCAAAAGTATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12190:555..4901-

>mRNA_Ecto-sp13_S_contig12190.1840.1 ID=mRNA_Ecto-sp13_S_contig12190.1840.1|Name=mRNA_Ecto-sp13_S_contig12190.1840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12190:555..4901- (Ectocarpus species13 EcNAP12_S_4_19m)
GATGCCGTTGCCAACGAAACGGAGTACCTAAGCGAGCCGGCCCGGAGATG
GACTAAGCTAAGACAAAACTTCCGCCTTGCGGCGCTACGATCCATCGCCC
AAGATAAGCGGGAAGCTCTCAAGAAACTTCAAGAGGTTAGGAAGAGAGCA
GACAAGGCCCAGGAGGCCCAGAGTGACAGCCGAACTTGCAAGATCTGCTG
GGACAGGGCGACGAATACCGTGTGCTTGGACTGCGGACACCAGTGCATGT
GCACAAGGTGTGGGGCGTGCATGACATTCTGCCCCATTTGCATGCAGGAT
ATTACCGACCTGGTGGAGTTGCAATAG
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