mRNA_Ecto-sp13_S_contig7249.18384.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7249.18384.1
Unique NamemRNA_Ecto-sp13_S_contig7249.18384.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7249.18384.1 vs. uniprot
Match: A0A6H5JRB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB1_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.240e-24
Identity = 109/143 (76.22%), Postives = 112/143 (78.32%), Query Frame = 1 
Query:  841 LDEAGLL--RCSSTGLDSA----AGGGHLSVLEWMLDHKAHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHASGICRASLANLDEVARGGQLRALIWLSERGARASTSAVDRAAEAGHLG 1251
            L E GL+  RC   G  S     AGGGHLSVL+WMLDHKAHH             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX H SGICRASLANLDEVAR GQLRALIWL+ER ARASTSAVDRAAEAGHLG
Sbjct:   66 LIEVGLVFGRCERGGHVSRILDRAGGGHLSVLQWMLDHKAHHRCSSNAYGLAASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHDSGICRASLANLDEVAREGQLRALIWLNERDARASTSAVDRAAEAGHLG 208
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BLAST of mRNA_Ecto-sp13_S_contig7249.18384.1 vs. uniprot
Match: D7FH20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH20_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.670e-18
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query: 1102 HASGICRASLANLDEVARGGQLRALIWLSERGARASTSAVDRAAEAGHLG 1251
            HASGICRASLANLDEVAR GQLRALIWLSERGARASTSAVDRAAEAGHLG
Sbjct:  207 HASGICRASLANLDEVAREGQLRALIWLSERGARASTSAVDRAAEAGHLG 256
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7249.18384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRB1_9PHAE6.240e-2476.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH20_ECTSI6.670e-1898.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7249contigEcto-sp13_S_contig7249:990..6077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score94.4
Seed ortholog evalue1.4e-16
Seed eggNOG ortholog2880.D7FH20
Model size1251
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.ankyrin repeats
EggNOG OGs2EN75@1,2SRQ2@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_003180.1
Cds size1251
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7249.18384.1prot_Ecto-sp13_S_contig7249.18384.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7249 990..6077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463992.4892437-CDS-Ecto-sp13_S_contig7249:989..11541681463992.4892437-CDS-Ecto-sp13_S_contig7249:989..1154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7249 990..1154 -
1681463992.5091414-CDS-Ecto-sp13_S_contig7249:1465..16301681463992.5091414-CDS-Ecto-sp13_S_contig7249:1465..1630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7249 1466..1630 -
1681463992.522863-CDS-Ecto-sp13_S_contig7249:2303..23961681463992.522863-CDS-Ecto-sp13_S_contig7249:2303..2396Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7249 2304..2396 -
1681463992.534131-CDS-Ecto-sp13_S_contig7249:2977..31541681463992.534131-CDS-Ecto-sp13_S_contig7249:2977..3154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7249 2978..3154 -
1681463992.5520663-CDS-Ecto-sp13_S_contig7249:3774..39341681463992.5520663-CDS-Ecto-sp13_S_contig7249:3774..3934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7249 3775..3934 -
1681463992.5642383-CDS-Ecto-sp13_S_contig7249:5586..60771681463992.5642383-CDS-Ecto-sp13_S_contig7249:5586..6077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7249 5587..6077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7249.18384.1

>prot_Ecto-sp13_S_contig7249.18384.1 ID=prot_Ecto-sp13_S_contig7249.18384.1|Name=mRNA_Ecto-sp13_S_contig7249.18384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=417bp
MSSSSVAPAATAASREGCGKTTVVGALLSRVLATPGLLEACTAYQHGDSF
LSYDDGDLAAAQGHLSLLRLRHALRREGKREETGHDSKVSHGFCGRSRSR
SGITDAEENSGRGEEDQGESHPLLPAKDEEDVGREGDGPLLDDLKFSHRA
ADWAAAQGHLEVVRWLLENRDEGCTESAVDGACWNGHEATVRWLVCGRKQ
AGSERALDYAASTGRIELVKWLSRRPGSTCTLAAMDGAAGGGYLDVVRWL
AGNRQEGCSQAAFEMAASKGHLDVIKRLQWLDEAGLLRCSSTGLDSAAGG
GHLSVLEWMLDHKAHHRCSSNAYGLAASRGHLDVCEWLQLWMPDLRCPAW
AAEAAAAAGHLEVVRWLHASGICRASLANLDEVARGGQLRALIWLSERGA
RASTSAVDRAAEAGHLG
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mRNA from alignment at Ecto-sp13_S_contig7249:990..6077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7249.18384.1 ID=mRNA_Ecto-sp13_S_contig7249.18384.1|Name=mRNA_Ecto-sp13_S_contig7249.18384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5088bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7249:990..6077- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCGTCGTCAGTAGCACCAGCAGCCACAGCAGCATCACGCGAGGG
CTGTGGAAAAACCACGGTGGTGGGCGCGTTGCTGTCCCGCGTGCTGGCGA
CCCCGGGACTGCTGGAGGCGTGCACAGCCTACCAGCACGGGGACTCATTC
CTTTCGTACGACGACGGCGACTTGGCGGCTGCTCAGGGACACCTCAGTCT
CTTGCGGCTCCGACACGCGCTTCGTCGAGAGGGGAAAAGGGAAGAGACTG
GTCACGACAGCAAAGTCAGCCACGGCTTTTGCGGCAGGAGCAGGAGTAGG
AGCGGTATCACGGACGCCGAAGAAAATAGCGGCAGAGGCGAAGAGGATCA
GGGTGAATCGCACCCGCTCTTGCCAGCGAAGGATGAGGAGGATGTGGGGC
GGGAGGGGGATGGACCGCTGCTCGACGATCTGAAGTTTAGCCATCGCGCG
GCGGACTGGGCTGCTGCTCAAGGCCACCTAGAGGTTGTTAGGTGAGTTCG
TTGTCAGGCGATATGCCATCGTATTGCTTTATCTCTCAGCACCGTGCTGC
TGCTGCTGCTGCTGCTGCTGCTACTGCTGCTGTTTCTGTGTACAAAATGG
ACGAAGTACCCCCCCTCCCTCAGAAGTACATTTGTAATATTCCGTACCGA
GTACAACTCGAGGCGATATGTCGACGAAGAGAAGCTCGAGAGTCCTGCGG
CATGGATCACGCTGGATAGCGAATCCGTGCACCTCTGAACGAAGCACACT
GAAGTCCTAATAAAGTTACCCTGCTGCACTCTTGCACGTGGAGCAAAGTA
CGGTCCTTAACCTGACTCTATAATAGTTACGCTAGGGCTTAGTTTTTTTT
GGGGGGGTACTCATAGTCGTGCATGCCGTAGTCGTTTGACCATTGACTTT
GCATCCCTGCGAAGCCGGGACGGAGCACGCCGGGTTCCCACCGATCCAGG
CTCTCACATCACCAAGCGCGAATCGCCGCGAGGTATTCGGCGGGTCGCAC
GGAGGGTGCGCTGCATCTTTCGAAGCGTGTTCCGCATCTTGTGCTTACTT
CCTTGCGTACGGATGGCAGCTGCGATGACGTAATTTACTTTCTGGTTCTT
TTACTTCCAGAGACAGTTATGAGCACTATGTGACACTCGAAGTTCTTGGG
GAGGTGGGGGGTAGATGTACGGCATATCCATTGTGCTATAAGTCTTGTAG
CATTGGTGACTCGTAGCATAGTGGATATGCTGTGCACATAACAAAGTACA
AAATGAGTCCTCGGAGTCGTTTGAGATATTGGGCCTCGGGTTCCGCCCGA
GGGTTGTAAGGGTTGTATAATCCCTGAAATCAGTGCTACCCCATTCGGCT
CGTCGGCTTACAGGCGGGAATATGCGTATGCGTTTTCACTTGGACGACTG
TTGTGTACATGTATTCCATGACAACGAGGAGTGTATTCCAGACTATTTTC
TTTCCCGGAAAAAGTGTCACAAATGGTCACAAATGGTCACAGAGGGATTC
GAACCCTTGTTGAACGTTGTGAGATACACAGTCCATCCACTAGACTATCC
TGCACGTCAGCATACGGCATTGTGGGTATGCTGTACATCTACCAGAGGAT
AGTCCGTTCAGCATCTGCGGATCTGACGAGCATGGGGGTGTTGAGCATGC
TGTTGGACATGCACATTCTCGACGACTTGCCACCCACTTTGCCTCCTCTC
TTTTGGCACGAGCTCTGGTTTGTTGGATTCACATTTACCTGGACTACGCC
CTGCTTTTCTTCTTTAGGCTGAGCACAATTCAGTGAAAATATGCGGGAAG
GAAATATGTTCTGGTATCCAGTACCGTTAGACAGTACGCTGCCCATCTCG
TAAATGTTAGACAAAGAGGTCTGTGGTTTTCAGTGACTTGTCCATCGATC
TTACTGTTCTGATGGGTTCATCGACATTAACAAATATATATTCGCGTAAC
GACCAAGGACAAGATTTAGGCCTGAAAAAAGTCGAACGTCGCGGCCTAAC
CGCTCGTGCAAGTAACCTCTTTCAGCTTGTGGCCTAAGCCTCAACATCAA
TGAGCCTAAGCAAGCAAAGGGGGATACAGAGAACCACGAATACCCTCACT
GTCCTCCGGTGGATACGGTGTCTCAACAACGGTCTGGGAATAGGTGGCTG
TTGGAAAACAGAGATGAGGGCTGTACCGAGAGCGCTGTGGACGGAGCTTG
CTGGAACGGTCACGAGGCCACGGTGCGCTGGCTCGTGTGCGGACGGAAAC
AAGCGGGGTCGGAGCGCGCCTTGGACTATGCCGCGTCTACCGGTAGAATT
GAGGTGAGCCAATCCACGGAAACGAAGAACCGGTGACAAAAGCTCTTAAG
GTACTCACTTCCGTGAAGCCTGGTGCTTACGGAGGACTCTTATTGTTTAA
ACGAGCGTGGACACGGCTGTACGTTGTTTCCGCCTCTTGGACCTCCCCTC
CCTCGGTGTGAGCAGCCCTTTAGAACACGTTTCGATTCAGCTTTGCAACA
TCTCGGAATCGGGCGTTTTTTTTTTATTTCCACGCCCCAACCCGAATGGT
ATGCCGCCAATCAAACCTTGAAGAACACTACGGACCACCACCATCGCGCC
GTCCAGACAAAAAACAACGCATGGTAATAATTACTGACATTCCACCGGGC
GTTGTTTTTCGTTCCACATCCCAGCCCGAATGGAAACACCGCTAACAAAA
ACCTTGAACAACAATAATACAGAACACCACCACCATCACACCGTCCCGAC
CGAAAATACAACGAAGACATTATCGCCAGTCCGCCCATCTCGCTTGACGC
ACCCCCCCCCCCCCCCCCCCTTTTCCCCCCCCCCCCCCCCTCCCCCTCCC
CCCCCGTGCAGTCGCTCTCCCGGGGGCCCGGCCCCCCCTAATTTTCGCCC
TGCCTCGGCTCTTGCCTGCACAGCTGGTGAAGTGGCTCTCCCGGAGGCCA
GGCTCGACCTGCACTTTGGCGGCCATGGACGGCGCGGCGGGGGGCGGCTA
CCTCGACGTGGTCCGCTGGCTCGCCGGCAACCGGCAGGAGGGGTGCTCGC
AGGCTGCCTTCGAGATGGCTGCCTCCAAGGGTCACTTGGACGTGATCAAG
GTACATGCATGCATGCATGCATGAGTAGGAGGAATGTGCGTAGGAGGAAT
TATGCATGCATGCATTTGTAGGAGGAATGGACGCCACGAGATGGGCAGAA
GGAGCCGGTTGCAGGTTTTGTTTGATCTGTGTACGGAACGAAATGCCATC
GGCTTGGCGTCGTTTGGTTTGCTTCGGCTATGTTTGATCGAGGTCGGTTT
GGTTTTCGGTCGCTGCGAACGTGGTGGACACGTCTCGAAGTATCTTGGGC
AGAGGTACGTACATGGGTCAGGACGTTGATCGAGCTTTCCTGTCGCTCAT
GTCCTTCGAAGAGTTGCTTAAATCACTCAACCGAAACCCGTTTGTTGGGA
AACTTGGCCATCTTTACGACACGTACCGTCTCACCACGAAAAGTGGCGGG
ACCATCGCCATAGTATACAGGACGAAAACACACTCACATATCTACCTCTT
CCCGATAGCCTCGCTTTCGCCTCGGTCGTTCTCGCAGACGCAAACGTCAT
GCATTGCACTTAGCGGGGCCGGGCCTTTCTTAATTTTGGTGCCTGTTCTC
TTTTCTGTTCGTCTACCGGCGTGTCGCCGAGCGCTTACAGTGGCTTGACG
AGGCCGGGCTCCTTCGTTGTTCTTCGACGGGCTTGGACAGCGCAGCGGGA
GGCGGGCACCTCAGTGTCCTTGAGGTACTGCCATGTCTAGACCTTCCTCG
ACCGGACTCTACAAGCGTGCAACGCGCGAGTCAAAAGAGTACAACAAATA
GTACTTTTCGCCGATCGAATATGGCTGCCCAAGAGTTTTAAGGATTAGCG
CACGGATGGCGGAAGAGGGGCGTTCTCCATTCCTTCCTTGTTGCTTGACG
GCGTGTACCGAGGGAAGGATGCTTCCTATGCGCGAGTTTTTCGCTGCAGT
ATCCCGACATGCTGGTCAGGTTAGAGTATGTGGTAGCTTTGAGGCAGTCT
GGCTTCAACCTGATTTCGTGCCAGAAAACGAAAGCGCGGTGCGCGCTTCA
CCCTAGGCACACGGATGAGCAAGCCTTGTTGCCTAGGGGTACGCTTTCCG
AAGGTCTGGTTTTCACTAGGATTGCTTAAAGGCTGGGTTGGCCGCATACC
GCGGCCAAGCATGCTGCGGCCAAGCATGCTGCGGCCAAGCATGTTGCGGC
CAAGCATACTGCGGCCAAGCATACTGCGGCCAAGCATGCTGTGGCCATGT
GTTGCCGCCCTGTACTTGGCGCGGGATGGTGGGTGACACTTCAGAGGAAA
ACCGTGCGCGAGTTCCCGGCTCGACGAGGCTTAACTCTGTGCGCCACGTC
CTTGTCGTGCGCGTGCTTTTACCTCGTGGGCATCTGCCTGCAACCAGTGG
ATGTTGGACCACAAGGCGCACCACCGATGCTCGTCTAACGCCTACGGGCT
CGCCGCAAGCCGAGGGCACCTTGACGTCTGCGAGTGGCTGCAGCTGTGGA
TGCCAGACCTGCGATGTCCTGCCTGGGCGGCGGAGGCTGCAGCCGCGGCG
GGACACCTCGAAGTGGGTGCTTTTTTTCGTTTGTCTTAGCATATGTTTCT
CTGTCCCCGTTGGCTTTTCCGGATCCGACCGTCCCTTTGGGATCTACGCC
TGAGCACATCTGCTGGTTGACTTTTTTTTCAAAGTTTCTCTTAGCACCAG
TCTTTGAAACTCTGCCTGTAGGATATGTGGAGCACCCCAATCTACCCCTT
TCAAATATTATTTGGATTGTAGTGCCTACCACTGCTGTGTTGGCGAGGCT
TGACTCGGCTCCGAACCACGTATATTTCCTTCCCAAACAGAAGAAGCACC
AAACAACCGTGAACGAAACGCAGGTAGTTCGCTGGCTCCACGCGTCCGGC
ATCTGTCGGGCCTCTCTCGCTAACCTAGACGAGGTGGCGCGCGGGGGCCA
GCTGCGCGCCTTGATCTGGCTCAGCGAGCGTGGCGCCAGGGCCAGCACCT
CGGCGGTGGACAGGGCGGCCGAAGCCGGGCATCTAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7249:990..6077-

>mRNA_Ecto-sp13_S_contig7249.18384.1 ID=mRNA_Ecto-sp13_S_contig7249.18384.1|Name=mRNA_Ecto-sp13_S_contig7249.18384.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1251bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7249:990..6077- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCGTCGTCAGTAGCACCAGCAGCCACAGCAGCATCACGCGAGGG
CTGTGGAAAAACCACGGTGGTGGGCGCGTTGCTGTCCCGCGTGCTGGCGA
CCCCGGGACTGCTGGAGGCGTGCACAGCCTACCAGCACGGGGACTCATTC
CTTTCGTACGACGACGGCGACTTGGCGGCTGCTCAGGGACACCTCAGTCT
CTTGCGGCTCCGACACGCGCTTCGTCGAGAGGGGAAAAGGGAAGAGACTG
GTCACGACAGCAAAGTCAGCCACGGCTTTTGCGGCAGGAGCAGGAGTAGG
AGCGGTATCACGGACGCCGAAGAAAATAGCGGCAGAGGCGAAGAGGATCA
GGGTGAATCGCACCCGCTCTTGCCAGCGAAGGATGAGGAGGATGTGGGGC
GGGAGGGGGATGGACCGCTGCTCGACGATCTGAAGTTTAGCCATCGCGCG
GCGGACTGGGCTGCTGCTCAAGGCCACCTAGAGGTTGTTAGGTGGCTGTT
GGAAAACAGAGATGAGGGCTGTACCGAGAGCGCTGTGGACGGAGCTTGCT
GGAACGGTCACGAGGCCACGGTGCGCTGGCTCGTGTGCGGACGGAAACAA
GCGGGGTCGGAGCGCGCCTTGGACTATGCCGCGTCTACCGGTAGAATTGA
GCTGGTGAAGTGGCTCTCCCGGAGGCCAGGCTCGACCTGCACTTTGGCGG
CCATGGACGGCGCGGCGGGGGGCGGCTACCTCGACGTGGTCCGCTGGCTC
GCCGGCAACCGGCAGGAGGGGTGCTCGCAGGCTGCCTTCGAGATGGCTGC
CTCCAAGGGTCACTTGGACGTGATCAAGCGCTTACAGTGGCTTGACGAGG
CCGGGCTCCTTCGTTGTTCTTCGACGGGCTTGGACAGCGCAGCGGGAGGC
GGGCACCTCAGTGTCCTTGAGTGGATGTTGGACCACAAGGCGCACCACCG
ATGCTCGTCTAACGCCTACGGGCTCGCCGCAAGCCGAGGGCACCTTGACG
TCTGCGAGTGGCTGCAGCTGTGGATGCCAGACCTGCGATGTCCTGCCTGG
GCGGCGGAGGCTGCAGCCGCGGCGGGACACCTCGAAGTAGTTCGCTGGCT
CCACGCGTCCGGCATCTGTCGGGCCTCTCTCGCTAACCTAGACGAGGTGG
CGCGCGGGGGCCAGCTGCGCGCCTTGATCTGGCTCAGCGAGCGTGGCGCC
AGGGCCAGCACCTCGGCGGTGGACAGGGCGGCCGAAGCCGGGCATCTAGG
C
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