mRNA_Ecto-sp13_S_contig7241.18374.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7241.18374.1
Unique NamemRNA_Ecto-sp13_S_contig7241.18374.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7241.18374.1 vs. uniprot
Match: D7FUS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS6_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.520e-32
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGIFVESVCLDPS*GGVVMLTSDHGYTSSGKWSKVDWATQVAPAAMDEPKLRTYESTMNT 343
            +H A+ DADEFIDG+DGISA VQL+PTL N+ VYVDPRRLSEG APG  V++V LDPS G VVMLT+ H Y SSGK  +V WA QVAP AMD+ K+ TY ST  T
Sbjct:   89 KHPAEVDADEFIDGVDGISASVQLSPTLTNVWVYVDPRRLSEGRAPGTCVKTVGLDPSKGVVVMLTTPHDYMSSGKIPQVKWARQVAPTAMDKQKMDTYGSTGKT 193
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BLAST of mRNA_Ecto-sp13_S_contig7241.18374.1 vs. uniprot
Match: A0A6H5J7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F0_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.550e-30
Identity = 70/105 (66.67%), Postives = 78/105 (74.29%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGIFVESVCLDPS*GGVVMLTSDHGYTSSGKWSKVDWATQVAPAAMDEPKLRTYESTMNT 343
            +H AQADADEFIDG+DGI+ARVQL+  L NL VY+DPRRLSEG APG  VE+V LDP  G VVMLT+DH YTSS K  KV WA QVA  AMD  K+ TY S   T
Sbjct:   88 EHHAQADADEFIDGVDGITARVQLSSALTNLWVYIDPRRLSEGRAPGTRVETVGLDPRKGVVVMLTTDHDYTSSSKCPKVLWARQVARTAMDMSKMDTYGSIGET 192
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BLAST of mRNA_Ecto-sp13_S_contig7241.18374.1 vs. uniprot
Match: D7G896_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G896_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 8.680e-29
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGIFVESVCLDPS*GGVVMLTSDHGYTSSGKWSKVDWATQVAPAAMDEPKLRTYESTMNT 343
            +H A ADADEFIDG+DGI+ARVQL+  L NL VY+DPRRLSEG A G  VE+V LDPS G VVMLT+D+GYTSS K  KV WA QVA AAM++PK+ TY S   T
Sbjct:   86 KHHAHADADEFIDGVDGITARVQLSSVLTNLWVYIDPRRLSEGRALGTSVETVGLDPSKGVVVMLTTDYGYTSSSKCPKVLWARQVARAAMNKPKMDTYGSIGET 190
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BLAST of mRNA_Ecto-sp13_S_contig7241.18374.1 vs. uniprot
Match: A0A6H5JA28_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA28_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.860e-27
Identity = 65/105 (61.90%), Postives = 79/105 (75.24%), Query Frame = 2 
Query:   29 QHAAQADADEFIDGMDGISARVQLAPTLANLEVYVDPRRLSEGHAPGIFVESVCLDPS*GGVVMLTSDHGYTSSGKWSKVDWATQVAPAAMDEPKLRTYESTMNT 343
            +H A+ DADEFIDG+DGISARV L+P L N+ VYV PRRLSEG A G  V++V LDPS G +VMLT+ H Y SSG++ +V WA QVAPAAMD+ K+ TY S   T
Sbjct:   89 KHPAEVDADEFIDGVDGISARVHLSPALTNIWVYVGPRRLSEGRASGTCVKTVGLDPSKGVLVMLTTPHDYISSGEFPQVKWARQVAPAAMDKQKMDTYGSIGKT 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7241.18374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FUS6_ECTSI2.520e-3266.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7F0_9PHAE1.550e-3066.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G896_ECTSI8.680e-2966.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA28_9PHAE3.860e-2761.90PARP catalytic domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7241contigEcto-sp13_S_contig7241:978..4193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1931
Hectar predicted targeting categoryother localisation
Exons3
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.8958452-UTR-Ecto-sp13_S_contig7241:977..23981681463991.8958452-UTR-Ecto-sp13_S_contig7241:977..2398Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7241 978..2398 -
1681463991.928028-UTR-Ecto-sp13_S_contig7241:3793..38341681463991.928028-UTR-Ecto-sp13_S_contig7241:3793..3834Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7241 3794..3834 -
1681463991.938485-UTR-Ecto-sp13_S_contig7241:3979..41931681463991.938485-UTR-Ecto-sp13_S_contig7241:3979..4193Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7241 3980..4193 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463991.906899-CDS-Ecto-sp13_S_contig7241:2398..25781681463991.906899-CDS-Ecto-sp13_S_contig7241:2398..2578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7241 2399..2578 -
1681463991.9173162-CDS-Ecto-sp13_S_contig7241:3718..37931681463991.9173162-CDS-Ecto-sp13_S_contig7241:3718..3793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7241 3719..3793 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7241.18374.1prot_Ecto-sp13_S_contig7241.18374.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7241 2399..3793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7241.18374.1

>prot_Ecto-sp13_S_contig7241.18374.1 ID=prot_Ecto-sp13_S_contig7241.18374.1|Name=mRNA_Ecto-sp13_S_contig7241.18374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MVESRLGNAGGTGGDGRAETAHLRKYDEHKAQLCLADEELRPALRAGFME
FTELKRRLPQVDEASVGCQCVQQNNCHRRRKYTR*
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mRNA from alignment at Ecto-sp13_S_contig7241:978..4193-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7241.18374.1 ID=mRNA_Ecto-sp13_S_contig7241.18374.1|Name=mRNA_Ecto-sp13_S_contig7241.18374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7241:978..4193- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTGCATCGCCCCCCACGCTTCGGGGCAGCATGCCGCACAAGCTGATG
CAGACGAGTTTATCGACGGCATGGACGGTATATCTGCGAGGGTCCAGTTA
GCCCCGACACTGGCGAACCTCGAGGTTTATGTCGACCCTAGGAGGCTTTC
CGAAGGCCATGCTCCCGGCATTTTTGTCGAGTCTGTCTGCCTGGATCCCA
GTTAAGGAGGGGTGGTAAGAAGAACGCGATAAGTCAGGATCGGAACCGTT
TGACCGCATCTGTTTCTACTGAGTGCGTTTTTGGGACGTACCAATATGAA
AGTAGTCCGATGTGCCTGGTGAGCACGTTGTTCATGGCGTTCGCGCCTCG
AACATGCAGGTGATGCTCACCTCCGACCATGGGTACACATCGTCAGGCAA
ATGGTCGAAAGTAGACTGGGCAACGCAGGTGGCACCGGCGGCGATGGACG
AGCCGAAACTGCGCACCTACGAAAGGTAGGGGCTGAACTTTGTAAACGGC
TGAGGTTTGGGCCGTGTACAAAGGAAAGGTATTTATTTCAAACAAGCCCC
CCGCTATCCTGGGCTACGTAGGGACTTGGTTTGTTTGGTATATACCCTAA
ATTGTGGCCGCAGACGGTCCCTGTGTGGCCTTCAAAGAGCAGCACAGAAG
AGGGGCCGGGTAGACCAGATGTCACGACGGGAAGCCGACTGCCCAAAACG
ACGACGATGATGAGAAATATGGCTTTAGGGCTAAGGCATGAGGACTTGGG
TACTTCCAGCCGTAGATGGAACATCAACCCTGTGAGTCATCTGGTACGTA
GCCCTTGATCCTCATGCACGAGCGTTCCCACAAACGATCCACCCCCGGTA
CGGGTAGAGCTCCGTGACAATTTAGGGCGCAGTCGATTTGGATCATAGAA
ATCGTGTTGTTTGAGAAACATCCAGAACCTTGCACGGCCAACATCCAGAA
GCCTACGAACGTACATACTCAACCACTCGCGCAGGAAAATGGAATTCCTT
CGAGTGAAAGTCCGCAAAAGACACGGAACAGGAACGTATGAGAATTTCGA
TGTACCACGTGTCGAGTGGGGGCCGTGCAGAATCAGCCAACAACCTATCC
ACAACGATAAGGACGTCGATGACAACAACCGCGAACTCAATCACGGACAT
GGACGACCCACCAGCAGCATTAGCGAGACGTTCCCGCACCAGTGGATACT
GCAGAAGGCTAGTCTTCAGACCGGATTCATGCCAACTTGGTCCCGCCACA
TGAAACGGTTGCGCACGACAATCGTTCAAGAGGGTTGGGTATCGGCGCCG
GCAACACGCCGGGTGGTAAAGATGATCAGCGAATCCTCGGTGTTGTCGGC
CGAACTTGCTGCCTACGTACTCCGGGTCTCGAAGGAGCCTTGGGAAGGGT
GCTACGGAGGTGGTGGTACGGGATGATGGGTGTATGCCACAGTGGGGTAC
TGACGAGGTTGTGTTTGTCCATGACGTTTATCTGCCTTCAGCGTGTGGAG
AAAACAATGGCGTTTTGCTGCAATATTTTACGTGACTGCGATCGTGTAGG
GCTACAGCTCTCCAACAACAGCACGATAGAGATCTCACACCCCGTGTATT
TCCCCCCCGTCCCAGTACGATGAACACAAGGCACAGCTTTGCCTTGCCGA
CGAGGAACTGCGACCGGCGCTAAGGGCAGGGTTCATGGAATTCACTGAGC
TGAAGAGGAGGCTCCCACAGGTCGACGAGGCGAGTGTCGGTTGCCAATGC
GTTCAACAGAACAACTGCCACAGAAGAAGGAAGTATACCAGGTAAAGGTT
CGGAAGCCGTGTACACCAGGTAAAGGTTTGGAAGCCGTTGTCGTTGTTCT
CCATTTGATTCGGACCACGCCTTCGGGGGAACACGACTAACGATTTGGGC
AACGCCTTCGTTCCAGAGTGCGCGATGCCTGTTGTAGAAGTAAGTCGTGA
GGTCGTGAGGACAGGAAACAAGGAAAGGTTGGCATAAGACGTCGTGTCAC
ACGTCACGCGTACGCTGAGTTTTCCAGCGTCCGTCCGTAGGAGTCGCGGT
GCTTCTTGCGATGGTACTTGATAAGGGTTGTTGCAGGGGTTGACTTCACT
GTAGTTGTGTGGCCATCCCTGCAAATTGCTCTGTCTGTTTCGGGGTCGGC
ACGGAATATGTTTGCATGGCAACAGTTTTTCGGGCAGCAATCGTTTCGGA
ACCACAGTCGACGACACAGTTGGTTGCGCTCATCCCCCGGGGGGGGGAAA
CAACCGACGATAGATCTCAACTACTCACTCGCGGAAACGCTGTTTCGCCC
ATCCAACAGTAACCCTCAACCGTCTCCCCTCTTAGATCTGTTGTTTTGAC
ACCGTTGTGGCACATCCGGGTCCATCCAGCTACAACATGACTACCTGGCG
CGTGGCAATGACGCGGCCTCTGATAGACCCGCTGCCTCGCCCAGAGGGGG
AGACCGGTTGTCGCGACGATCTGTTAGACCAGTACCGTAGGGTTGCGTTG
AAGACGCTCGCCGAAACAAACCTATTGGTAAGTTGTTGTTGTTTTTGTTG
TTGTTGTTCTTGTCCTTGTCGTTGCAGCTCTTTTGGTTGGCGGTAACGAG
TACTTCGATGCCGATTTCCCCATTCGGATTTTGCGGGGCCTTCCGGACCA
TGTTCGATCTGAAACGTACAGGTACACGTATCGTTGCTCCGTGCCTATGA
TCAAGCCCCGACCGCCAGACGCGTGCTACTGCTCCCTGAGTGATGCCACG
GCGTTGTTTCGTACTGTCATCCAACCTCTACATTCCCGGCCTCTTCGATG
CCAAGGTTCACGTGGCGCTGACCGTGATCGAAACGCTGAAGAAGAACATC
AAGATCTGCCTGGTTTGCGGCGAACATGCAGCGGTACACGTATACTAGGT
CGATACTGACCGTTTGCCACCAGGTGGGGTCGATGTAGGAGCGGTCAGTA
ACTTTCATCGAATCGCAAACCATGATTCGGGGGATTCGCGCATACAATAT
GTGGGTCCTATGGAGGTCCATGCTCTGTTGAACCCTAGAGTATTCGCATA
CAAACGGGGGTGATTGGGTTACCTCATCCGATCTCCTCTCAGTTGTGTCT
GCCTGTCTGTCTGTCTGTCTGTCTCTGTGACTTTCTCTCGCCTACCCTGC
CCCTCGTCCAACGACGGCAACAAACGCAGCCCCTTTACTCCTCAACCTCG
AAAGCTTCGGAGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7241:978..4193-

>mRNA_Ecto-sp13_S_contig7241.18374.1 ID=mRNA_Ecto-sp13_S_contig7241.18374.1|Name=mRNA_Ecto-sp13_S_contig7241.18374.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7241:978..4193- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGAAAGTAGACTGGGCAACGCAGGTGGCACCGGCGGCGATGGACG
AGCCGAAACTGCGCACCTACGAAAGTACGATGAACACAAGGCACAGCTTT
GCCTTGCCGACGAGGAACTGCGACCGGCGCTAAGGGCAGGGTTCATGGAA
TTCACTGAGCTGAAGAGGAGGCTCCCACAGGTCGACGAGGCGAGTGTCGG
TTGCCAATGCGTTCAACAGAACAACTGCCACAGAAGAAGGAAGTATACCA
GGTAA
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